BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	922,398	T→C	V88A (GTG→GCG)	yljA →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	922,398	0	T	C	99.4%	553.8 / ‑5.7	171	V88A (GTG→GCG)	yljA	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (80/90); total (81/90)
Fisher's exact test for biased strand distribution p-value = 4.74e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01

Only 100 of 180 total aligned reads displayed.

AACGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGTGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCCTA  >  NC_000913/922309‑922487

aaCGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGaa                                                                                        >  2:1018668/1‑93 (MQ=255)

 aCGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAAc                                                                                       >  2:1129816/1‑93 (MQ=255)

  cGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACa                                                                                      <  2:2638868/93‑1 (MQ=255)

   gCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACaa                                                                                     <  2:4131828/93‑1 (MQ=255)

     aaTTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGt                                                                                   >  2:4310738/1‑93 (MQ=255)

      aTTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTa                                                                                  >  2:4066283/1‑93 (MQ=255)

      aTTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTa                                                                                  <  1:2532718/93‑1 (MQ=255)

       ttGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTAc                                                                                 <  1:4069137/93‑1 (MQ=255)

       ttGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTAc                                                                                 <  1:385366/93‑1 (MQ=255)

       ttGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTAc                                                                                 >  1:801067/1‑93 (MQ=255)

       ttGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTAc                                                                                 <  1:15225/93‑1 (MQ=255)

       ttGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTAc                                                                                 <  1:1711551/93‑1 (MQ=255)

       ttGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTAc                                                                                 <  1:3155863/93‑1 (MQ=255)

        tGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCGAAGTGGCGATGGCGAACAAGTAcg                                                                                >  2:3850862/1‑93 (MQ=255)

         gATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTAcgc                                                                               >  2:731727/1‑93 (MQ=255)

         gATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTAcgc                                                                               >  2:4099576/1‑93 (MQ=255)

         gATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTAcgc                                                                               >  2:3873799/1‑93 (MQ=255)

           tGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGa                                                                             >  1:2061673/1‑93 (MQ=255)

            ggtCGCTGTTCACTCCCAGGGGAAGGCCTTTTGCGGAGTCTTTGCCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAg                                                                            <  2:1359583/91‑1 (MQ=255)

            gCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAg                                                                            <  1:1863659/93‑1 (MQ=255)

            gCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAg                                                                            >  2:1236460/1‑93 (MQ=255)

            gCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGAAGTATTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAg                                                                            <  1:2232881/93‑1 (MQ=255)

             ctgccTGTTCACCTCCAGGGGAAGGCCAGTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAgg                                                                           <  1:31641/89‑1 (MQ=255)

             cTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAgg                                                                           >  1:3675520/1‑93 (MQ=255)

             cTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAgg                                                                           <  1:992221/93‑1 (MQ=255)

              tCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCAAACAAGTACGCGAggg                                                                          >  1:2649746/1‑93 (MQ=255)

                gCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGgag                                                                        >  2:2068906/1‑93 (MQ=255)

                 cTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGgaga                                                                       <  1:513965/93‑1 (MQ=255)

                 cTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGgaga                                                                       <  2:3061720/93‑1 (MQ=255)

                 cTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGgaga                                                                       <  2:175700/93‑1 (MQ=255)

                   gTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATTGCGAACAAGTACGCGAGGGAGAAt                                                                     >  1:4305782/1‑93 (MQ=255)

                   gTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAAt                                                                     >  2:1638106/1‑93 (MQ=255)

                    ttCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATg                                                                    <  2:4637075/93‑1 (MQ=255)

                    ttCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGCTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATg                                                                    >  1:2874621/1‑93 (MQ=255)

                         tACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCAt                                                               <  1:2303174/93‑1 (MQ=255)

                            cAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCa                                                            >  1:3568098/1‑93 (MQ=255)

                             aGGGGAAGTCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCAt                                                           <  2:430938/93‑1 (MQ=255)

                              ggggAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGTGAACAAGTACGCGAGGGAGAATGAGCATCAAtt                                                          >  2:3291960/1‑93 (MQ=255)

                               gggAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTg                                                         <  1:1051249/93‑1 (MQ=255)

                                ggAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGc                                                        <  2:360461/93‑1 (MQ=255)

                                ggAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGc                                                        <  1:2340766/93‑1 (MQ=255)

                                 gAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCt                                                       <  2:2130229/93‑1 (MQ=255)

                                   aGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCtgt                                                     <  1:643886/93‑1 (MQ=255)

                                   aGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCtgt                                                     >  1:2516373/1‑93 (MQ=255)

                                    gaccATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCtgtg                                                    >  1:3491575/3‑93 (MQ=255)

                                     gCCATTTGCGGAGTCTTTACCGCAGAGGTTGCAGAAGCCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTgtgt                                                   <  2:2633265/93‑1 (MQ=255)

                                      ccATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTa                                                  <  2:149209/93‑1 (MQ=255)

                                      ccATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTa                                                  <  2:149208/93‑1 (MQ=255)

                                        aTTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACg                                                >  2:4303893/1‑93 (MQ=255)

                                         tttGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGc                                               >  2:1864188/1‑93 (MQ=255)

                                         tttGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGc                                               <  1:3533735/93‑1 (MQ=255)

                                         tgtGCGGGGTCTTTACCGCCGAGGTTTCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGc                                               <  1:1766018/91‑1 (MQ=255)

                                          ttGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGTAGAATGAGCATCCATTGCTGTGTACGCt                                              <  2:246028/93‑1 (MQ=255)

                                           tGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTa                                             <  1:1738489/93‑1 (MQ=255)

                                            gCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAg                                            >  1:820498/1‑93 (MQ=255)

                                              ggAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGaa                                          <  2:4281637/93‑1 (MQ=255)

                                               gAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGaaa                                         >  2:4190113/1‑93 (MQ=255)

                                                 gTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGaaaaa                                       <  1:1443598/93‑1 (MQ=255)

                                                 gTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGaaaaa                                       <  1:2306681/93‑1 (MQ=255)

                                                  tCTTTACCGGCGAGGTTGCAGAAGCCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAg                                      <  2:1910575/93‑1 (MQ=255)

                                                  tCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAg                                      >  2:1683008/1‑93 (MQ=255)

                                                   cTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGc                                     >  1:3539554/1‑93 (MQ=255)

                                                    tttACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGcc                                    >  1:2702986/1‑93 (MQ=255)

                                                    tttACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGcc                                    <  2:288668/93‑1 (MQ=255)

                                                     ttACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCt                                   <  2:3360137/93‑1 (MQ=255)

                                                     ttACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCt                                   <  1:4401764/93‑1 (MQ=255)

                                                       aCCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGCGATCAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGa                                 <  1:3320161/93‑1 (MQ=255)

                                                        ccgccgAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGTATCCATTGCTGTGTACGCTAGAAAAAGCCTGaa                                >  1:4573995/1‑93 (MQ=255)

                                                        ccgccgAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGaa                                <  2:1158700/93‑1 (MQ=255)

                                                         cgccgAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAAt                               <  2:3229142/93‑1 (MQ=255)

                                                          gccgAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATg                              >  1:3117851/1‑93 (MQ=255)

                                                          gccgAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATg                              >  1:200108/1‑93 (MQ=255)

                                                            cgAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCa                            <  2:1423130/93‑1 (MQ=255)

                                                            cgAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCa                            >  1:2739764/1‑93 (MQ=255)

                                                            cgAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCa                            <  1:1249623/93‑1 (MQ=255)

                                                             gAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAg                           <  1:3743056/93‑1 (MQ=255)

                                                             gAGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAg                           >  2:3472247/1‑93 (MQ=255)

                                                              aGGTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAgg                          >  2:3624230/1‑93 (MQ=255)

                                                                gTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCa                        <  1:1478888/93‑1 (MQ=255)

                                                                gTTGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCa                        <  2:220172/93‑1 (MQ=255)

                                                                 ttGCAGAAACCCAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCAt                       >  2:2747581/1‑93 (MQ=255)

                                                                  tGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATa                      <  2:4522746/93‑1 (MQ=255)

                                                                  tGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATa                      <  2:2270362/93‑1 (MQ=255)

                                                                  tGCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATa                      <  1:3947557/93‑1 (MQ=255)

                                                                   gCAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATaa                     >  1:3244910/1‑93 (MQ=255)

                                                                    cAGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATaaa                    >  2:2327693/1‑93 (MQ=255)

                                                                     aGAAACCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATaaaa                   >  1:159556/1‑93 (MQ=255)

                                                                        aaCCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAAtt                >  1:4476628/1‑93 (MQ=255)

                                                                        aaCCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAAtt                >  1:4749631/1‑93 (MQ=255)

                                                                        aaCCAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAAtt                <  1:1278780/93‑1 (MQ=255)

                                                                          ccAAAGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTgg              <  1:465726/93‑1 (MQ=255)

                                                                             aaGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTggggg           >  1:3298231/1‑93 (MQ=255)

                                                                              aGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGa          <  1:4245283/93‑1 (MQ=255)

                                                                              aGTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGa          <  2:1853933/93‑1 (MQ=255)

                                                                               gTGGCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAg         >  1:2231628/1‑93 (MQ=255)

                                                                                tggcgatggcgaACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAgg        <  1:116451/93‑1 (MQ=255)

                                                                                  gCGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTg      >  2:2473370/1‑93 (MQ=255)

                                                                                   cGATGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGc     <  1:1303271/93‑1 (MQ=255)

                                                                                    gATGGCGAACAAGTACACGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGcc    >  2:3130720/1‑93 (MQ=255)

                                                                                      tGGCGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCCTa  >  1:406806/1‑93 (MQ=255)

AACGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGTGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCCTA  >  NC_000913/922309‑922487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`