Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,009,201 T→C S5S (AGT→AGC uup → putative ATP‑binding component of a transport system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,009,2010TC99.0% 647.6 / ‑3.1 200S5S (AGT→AGCuupputative ATP‑binding component of a transport system
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (99/99);  total (100/100)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.85e-01

Only 100 of 208 total aligned reads displayed.

CGCTCTCCCAGGATTTCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGTATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATAACGAACGTGTTTGTCTGGT  >  NC_000913/1009111‑1009290
                                                                                          |                                                                                         
cGCTCTCCCAGGATTTCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCAt                                                                                         <  2:1691762/93‑1 (MQ=255)
cGCTCTCCCAGGATTTCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCAt                                                                                         <  2:1259610/93‑1 (MQ=255)
cGCTCTCCCAGGATTTCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCAt                                                                                         <  1:2419241/93‑1 (MQ=255)
 gCTCTCCCAGGATTTGGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATg                                                                                        >  2:935630/1‑93 (MQ=255)
 cctctCCCAGGATTTCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATg                                                                                        <  2:905664/92‑1 (MQ=255)
     tcCCAGGATTTCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGcatgcatg                                                                                    <  2:2537350/93‑1 (MQ=255)
     tcCCAGCATTTCGCCCGTAACCGCCAGATCCACAGCTGCTGGCTGATTACCGCATCCTGAAAGGAATAGTAATGTCATTAATAAGcatgcatg                                                                                    <  2:2317772/93‑1 (MQ=255)
      cccAGGATTTCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGcatgcatgc                                                                                   >  1:2321679/1‑92 (MQ=255)
      cccAGGATTTCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATgcatgg                                                                                   <  2:2706167/93‑1 (MQ=255)
      cccAGGATTTCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATgcatgg                                                                                   >  1:587032/1‑93 (MQ=255)
       ccAGGATTTCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATgcatggc                                                                                  >  2:1514536/1‑93 (MQ=255)
       ccAGGATTTCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATgcatggc                                                                                  >  2:1150241/1‑93 (MQ=255)
         aGGATTTCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATgcatggcgc                                                                                >  1:4724766/1‑93 (MQ=255)
          ggATTTCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATgcatggcgca                                                                               >  1:131862/1‑93 (MQ=255)
           gATTTCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATgcatggcgcat                                                                              >  2:617159/1‑93 (MQ=255)
           gATTTCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATgcatggcgcag                                                                              >  1:321607/1‑92 (MQ=255)
            gtttCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATgcatggcgcatg                                                                             <  1:958285/92‑1 (MQ=255)
            aTTTCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATgcatggcgcatg                                                                             >  1:4365442/1‑93 (MQ=255)
            aTTTCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATgcatggcgcatg                                                                             >  2:4660816/1‑93 (MQ=255)
               tCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCt                                                                          <  1:492453/93‑1 (MQ=255)
                   ccGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCg                                                                      >  2:23620/1‑93 (MQ=255)
                   ccGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCg                                                                      >  2:4341260/1‑93 (MQ=255)
                     gTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGtt                                                                    >  2:3743615/1‑93 (MQ=255)
                      tAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTc                                                                   >  1:2814585/1‑93 (MQ=255)
                       aaCCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCa                                                                  <  1:2845676/93‑1 (MQ=255)
                       aaCCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCa                                                                  <  1:385748/93‑1 (MQ=255)
                         ccGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGc                                                                <  1:3392644/93‑1 (MQ=255)
                            ccAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGAc                                                             <  1:1836394/93‑1 (MQ=255)
                             cAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGAcg                                                            >  1:2674282/1‑93 (MQ=255)
                             cAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGAcg                                                            >  1:4546483/1‑93 (MQ=255)
                             cAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGAcg                                                            <  1:1411678/93‑1 (MQ=255)
                              aGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGAcgc                                                           <  2:3151510/93‑1 (MQ=255)
                               gATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCCGAGCcgcg                                                          >  2:58843/1‑93 (MQ=255)
                                 tCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGcgcc                                                        >  1:3115345/1‑93 (MQ=255)
                                   cacaACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGcgccgc                                                      >  2:4238941/1‑93 (MQ=255)
                                   cacaACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGcgccgc                                                      >  1:1490994/1‑93 (MQ=255)
                                      aaCTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTtc                                                   <  1:2022685/93‑1 (MQ=255)
                                       aCTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTtct                                                  <  2:3547031/93‑1 (MQ=255)
                                       aCTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTtct                                                  <  2:355484/93‑1 (MQ=255)
                                          gctggctgATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGa                                               <  2:3969147/93‑1 (MQ=255)
                                           ctggctgATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGAt                                              <  1:62394/93‑1 (MQ=255)
                                             ggctgATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATaa                                            <  1:3494924/93‑1 (MQ=255)
                                             ggctgATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATaa                                            <  2:3137289/93‑1 (MQ=255)
                                             ggctgATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATaa                                            <  1:4517447/93‑1 (MQ=255)
                                              gctgATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAAc                                           <  1:3459036/93‑1 (MQ=255)
                                              gctgATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAAc                                           <  1:3558004/93‑1 (MQ=255)
                                                tgATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGc                                         >  2:2486300/1‑93 (MQ=255)
                                                 gATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCa                                        >  2:1386259/1‑93 (MQ=255)
                                                    tACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGaa                                     >  1:2207500/1‑93 (MQ=255)
                                                    tACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGaa                                     <  2:3405719/93‑1 (MQ=255)
                                                     aCCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCTCCGCTTCTCGATAACGCAGAAc                                    <  2:2992007/93‑1 (MQ=255)
                                                       cGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTg                                  >  1:713242/1‑93 (MQ=255)
                                                        gCAGCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGc                                 >  2:2080087/1‑93 (MQ=255)
                                                          aGCCTGAAAGGAATAGTAATGTCATTAATCAGCTTGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCat                               <  1:4592444/93‑1 (MQ=255)
                                                          aGCCTGAAAGGAATAGTAATGGCATTAATTAGCATCGATGGTGCTTGGCTGTCGTTCAGCGACGTGACGCGACTCGATAACACAGAACTGCat                               >  2:2980811/1‑93 (MQ=255)
                                                           gCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCTATAACGCAGAACTGCata                              >  1:2405812/1‑93 (MQ=255)
                                                           gCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCata                              <  1:4428878/93‑1 (MQ=255)
                                                           gCCTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCata                              <  2:2222385/93‑1 (MQ=255)
                                                             cTGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATc                            <  1:3695235/93‑1 (MQ=255)
                                                              tGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCg                           <  1:2608342/93‑1 (MQ=255)
                                                              tGAAAGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCg                           >  2:1925921/1‑93 (MQ=255)
                                                                aaaGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGaa                         >  2:70300/1‑93 (MQ=255)
                                                                aaaGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGaa                         <  2:1158559/93‑1 (MQ=255)
                                                                  aGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGa                       <  2:2634406/93‑1 (MQ=255)
                                                                  aGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGa                       <  1:1434291/93‑1 (MQ=255)
                                                                  aGGAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGa                       <  2:4321417/93‑1 (MQ=255)
                                                                   ggAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGCTAACCGAGCACTGACTATCGAAgca                      >  1:3261880/1‑91 (MQ=255)
                                                                   ggAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGAt                      >  1:1016039/1‑93 (MQ=255)
                                                                   ggAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGAt                      >  1:3969805/1‑93 (MQ=255)
                                                                   ggAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGAt                      <  1:869554/93‑1 (MQ=255)
                                                                   ggAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGAt                      >  1:2014743/1‑93 (MQ=255)
                                                                   ggAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGAt                      <  1:4301361/93‑1 (MQ=255)
                                                                    gAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATa                     <  2:4181805/93‑1 (MQ=255)
                                                                    gAATAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATa                     <  1:1910055/93‑1 (MQ=255)
                                                                      aTAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATaac                   <  1:2268082/93‑1 (MQ=255)
                                                                       tAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATaacg                  >  1:2773671/1‑93 (MQ=255)
                                                                       tAGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATaaca                  >  1:2520/1‑92 (MQ=255)
                                                                        aGTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATaacga                 <  2:1027427/93‑1 (MQ=255)
                                                                         gTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATaacgac                >  1:1591117/1‑92 (MQ=255)
                                                                         gTAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATaacgaa                >  1:2992145/1‑93 (MQ=255)
                                                                          tAATGTCATTAATCAGTATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATaacgaac               >  2:4045686/1‑93 (MQ=255)
                                                                          tAATGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATaacgaac               <  2:388049/93‑1 (MQ=255)
                                                                          tAAGGTCATGAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGTCGCTTCTCGATAACGCAGAACTGCATATCGAAGATaacgaac               >  2:4222831/1‑93 (MQ=255)
                                                                           aaTGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATaacgaacg              <  1:1991359/93‑1 (MQ=255)
                                                                           aaTGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATaacgaacg              >  2:860359/1‑93 (MQ=255)
                                                                            aTGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACTCAGAACTGAATATCGAATATaacgaacgg             >  2:1220246/1‑92 (MQ=255)
                                                                            aTGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATAACGAACgt             <  2:3920634/93‑1 (MQ=255)
                                                                            aTGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATAACGAACgt             <  1:1755466/93‑1 (MQ=255)
                                                                             tGTCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATAACGAACgtg            >  1:4360297/1‑93 (MQ=255)
                                                                               tCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATAACGAACGTGtt          >  1:2133114/1‑93 (MQ=255)
                                                                               tCATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATAACGAACGTGtt          <  2:15265/93‑1 (MQ=255)
                                                                                cATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATAACGAACGTGttt         <  2:4491678/93‑1 (MQ=255)
                                                                                cATTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATAACGAACGTGttt         <  2:2950385/93‑1 (MQ=255)
                                                                                 aTTAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATAACGAACGTGTTTg        <  1:316442/93‑1 (MQ=255)
                                                                                  ttAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATAACGAACGTGTTTGt       >  1:4058648/1‑93 (MQ=255)
                                                                                   tAATCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATAACGAACGTGTTTGTc      <  2:776617/93‑1 (MQ=255)
                                                                                    aaTCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATAACGAACGTGTTTGTCt     >  2:2869115/1‑93 (MQ=255)
                                                                                    aaTCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATAACGAACGTGTTTGTCt     >  2:841388/1‑93 (MQ=255)
                                                                                     aTCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATAACGAACGTGTTTGTCtg    >  1:3140237/1‑93 (MQ=255)
                                                                                      tCAGCATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATAACGAACGTGTTTGTCtgg   >  1:1632264/1‑93 (MQ=255)
                                                                                          |                                                                                         
CGCTCTCCCAGGATTTCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGTATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGATAACGAACGTGTTTGTCTGGT  >  NC_000913/1009111‑1009290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: