BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,222,734	T→C	intergenic (‑583/‑184)	b1172 ← / → b1173	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,222,734	0	T	C	100.0%	566.0 / NA	173	intergenic (‑583/‑184)	b1172/b1173	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (65/108); total (65/108)

Only 100 of 187 total aligned reads displayed.

TATGCGGGATATCATCATTTCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGTCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATGGAATCGAAATCAGTCG  >  NC_000913/1222645‑1222823

tATGCGGGATATCATCATTTCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCctggcctg                                                                                        <  1:2772002/93‑1 (MQ=255)

    cGGGATATCATCATTTCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGc                                                                                    <  2:2358665/93‑1 (MQ=255)

     gggATATCATCATTTCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGcc                                                                                   <  2:1028985/93‑1 (MQ=255)

     gggATATCATCATTTCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGcc                                                                                   <  2:2015678/93‑1 (MQ=255)

      ggATATCATCATTTCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCt                                                                                  <  2:785356/93‑1 (MQ=255)

        atatCATCATTTCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGc                                                                                <  1:623656/93‑1 (MQ=255)

        atatCATCATTTCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGc                                                                                <  2:3983041/93‑1 (MQ=255)

        atatCATCATTTCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGc                                                                                <  1:3914105/93‑1 (MQ=255)

         tatCATCATTTCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCg                                                                               >  2:3459907/1‑93 (MQ=255)

          atcatcATTTCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCgg                                                                              <  2:4071777/93‑1 (MQ=255)

          atcatcATTTCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCgg                                                                              <  2:2037904/93‑1 (MQ=255)

          atcatcATTTCATCATGATGTCTCTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCgg                                                                              <  2:3243389/93‑1 (MQ=255)

            catcatTTCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGc                                                                            <  1:3447523/93‑1 (MQ=255)

            catcatTTCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGc                                                                            <  2:2425714/93‑1 (MQ=255)

             atcatTTCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCt                                                                           >  1:4050006/1‑93 (MQ=255)

              tcatTTCATCATGATGTCTTTGGTGAGCGGGGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTg                                                                          >  2:4150693/1‑93 (MQ=255)

                atTTCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGAt                                                                        >  1:4469913/1‑93 (MQ=255)

                atTTCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGAt                                                                        <  1:494349/93‑1 (MQ=255)

                atTTCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGAt                                                                        <  2:381716/93‑1 (MQ=255)

                 tttCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATg                                                                       >  2:1531503/1‑93 (MQ=255)

                  ttCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGt                                                                      <  2:1059488/93‑1 (MQ=255)

                  ttCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGGGCCTGCGGGCTGATGt                                                                      >  1:126956/1‑93 (MQ=255)

                   tcatcaTGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGtt                                                                     <  1:71084/93‑1 (MQ=255)

                   tcatcaTGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGtt                                                                     <  2:588586/93‑1 (MQ=255)

                   tcatcaTGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGtt                                                                     <  2:806971/93‑1 (MQ=255)

                    catcatGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTg                                                                    >  2:1477638/1‑93 (MQ=255)

                     atcatGATGTGTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTgc                                                                   <  2:300228/93‑1 (MQ=255)

                     atcatGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTgc                                                                   <  2:247223/93‑1 (MQ=255)

                     atcatGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCATCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTgc                                                                   >  1:2136154/1‑93 (MQ=255)

                          gatgTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGcagcag                                                              >  2:3653327/1‑93 (MQ=255)

                          gatgTCTTTGGGGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGcagcag                                                              <  2:917742/93‑1 (MQ=255)

                           atgTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCaga                                                             <  1:4500409/93‑1 (MQ=255)

                            tgTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCagag                                                            >  1:3263505/1‑93 (MQ=255)

                             gTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGc                                                           <  1:4143672/93‑1 (MQ=255)

                             gTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGc                                                           <  2:2263243/93‑1 (MQ=255)

                             gTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGc                                                           <  1:4143671/93‑1 (MQ=255)

                              tCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCt                                                          >  2:1815039/1‑93 (MQ=255)

                              tCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCt                                                          <  2:4533805/93‑1 (MQ=255)

                              tCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCt                                                          <  2:2576719/93‑1 (MQ=255)

                               cTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCtt                                                         >  2:74250/1‑93 (MQ=255)

                               cTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCtt                                                         <  2:3863154/93‑1 (MQ=255)

                                tttGGTGAGCGGTGAACACAATACCCCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTa                                                        <  2:1391954/93‑1 (MQ=255)

                                tttGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTa                                                        >  2:1575869/1‑93 (MQ=255)

                                tttGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTa                                                        <  2:3887829/93‑1 (MQ=255)

                                 ttGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAg                                                       <  2:2730423/93‑1 (MQ=255)

                                  tGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAgg                                                      <  1:790094/93‑1 (MQ=255)

                                   ggTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGt                                                     <  2:461172/93‑1 (MQ=255)

                                    gTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTc                                                    >  1:4645052/1‑93 (MQ=255)

                                     tGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCa                                                   >  1:2497847/1‑93 (MQ=255)

                                      gAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCAc                                                  <  1:3638395/93‑1 (MQ=255)

                                      gAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCAc                                                  <  2:1798797/93‑1 (MQ=255)

                                       aGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACt                                                 <  2:2122617/93‑1 (MQ=255)

                                       aGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACt                                                 <  2:3432304/93‑1 (MQ=255)

                                         cGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTa                                               <  1:1718462/93‑1 (MQ=255)

                                         cGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTa                                               <  2:4608154/93‑1 (MQ=255)

                                         cGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTa                                               <  1:2840395/93‑1 (MQ=255)

                                           gTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGa                                             >  1:1023512/1‑93 (MQ=255)

                                           gTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGa                                             >  2:2875028/1‑93 (MQ=255)

                                            tGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGAc                                            <  1:2181862/93‑1 (MQ=255)

                                            tGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGAc                                            >  2:3309654/1‑93 (MQ=255)

                                            tGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGAc                                            >  2:4388463/1‑93 (MQ=255)

                                              aaCACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTTCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGc                                          <  1:1687295/93‑1 (MQ=255)

                                               acacAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGct                                         <  1:3648475/93‑1 (MQ=255)

                                                cacaATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGcta                                        >  1:193931/1‑93 (MQ=255)

                                                 acaATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGctac                                       <  1:4326060/93‑1 (MQ=255)

                                                  caATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGctact                                      <  2:2091671/93‑1 (MQ=255)

                                                     tACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACTCTACTATc                                   >  2:1079569/1‑93 (MQ=255)

                                                     tACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATc                                   >  2:401200/1‑93 (MQ=255)

                                                        acCTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCAtt                                >  2:2932822/1‑93 (MQ=255)

                                                         ccTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCAttt                               >  1:1174870/1‑93 (MQ=255)

                                                         ccTGCGCTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCAttt                               >  1:2117696/1‑93 (MQ=255)

                                                            gcgcTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATc                            <  1:3963652/93‑1 (MQ=255)

                                                             cgcTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATcc                           >  1:4696844/1‑93 (MQ=255)

                                                             cgcTGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATcc                           <  2:3292910/93‑1 (MQ=255)

                                                                tGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAAt                        >  2:2745469/1‑93 (MQ=255)

                                                                tGTCTCTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAAt                        >  2:1969131/1‑93 (MQ=255)

                                                                  tctcTTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATgg                      <  2:1879939/93‑1 (MQ=255)

                                                                    tctTCAGGGTGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCa                    >  1:1607318/1‑93 (MQ=255)

                                                                    tctTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCa                    <  2:563921/93‑1 (MQ=255)

                                                                     ctTCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCAt                   <  1:954041/93‑1 (MQ=255)

                                                                      ttCAGGATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATg                  <  2:1671024/93‑1 (MQ=255)

                                                                          ggATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATGGAAt              <  1:3110239/93‑1 (MQ=255)

                                                                          ggATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATGGAAt              >  2:4284128/1‑93 (MQ=255)

                                                                          ggATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATGGAAt              <  1:4072477/93‑1 (MQ=255)

                                                                           gATGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCTATGGCATGGAATc             <  1:3137081/93‑1 (MQ=255)

                                                                            aTGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATGGAATCg            >  1:2313517/1‑93 (MQ=255)

                                                                            aTGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATGGAATCg            >  1:1078305/1‑93 (MQ=255)

                                                                             tGAATCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATGGAATCGa           <  1:1795484/93‑1 (MQ=255)

                                                                               aaTCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATGGAATCGaaa         <  2:838633/93‑1 (MQ=255)

                                                                                aTCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATGGAATCGAAAt        <  1:2511797/93‑1 (MQ=255)

                                                                                 tCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATGGAATCGAAATc       <  1:907327/93‑1 (MQ=255)

                                                                                 tCCCCTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATGGAATCGAAATc       >  2:2458727/1‑93 (MQ=255)

                                                                                  ccccTGGCCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATGGAATCGAAATCa      <  2:2193056/93‑1 (MQ=255)

                                                                                    cctggcctggTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATGGAATCGAAATCAGt    <  2:2051265/93‑1 (MQ=255)

                                                                                    cctggcctggTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATGGAATCGAAATCAGt    >  1:589558/1‑93 (MQ=255)

                                                                                     ctggcctggtGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATGGAATCGAAATCAGTc   >  1:3691815/1‑93 (MQ=255)

                                                                                     ctggcctggtGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATGGAATCGAAATCAGTc   <  1:1255957/93‑1 (MQ=255)

                                                                                      tggcctggtGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATGGAATCGAAATCAGTCg  >  1:2210779/1‑93 (MQ=255)

                                                                                      tggcctggtGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATGGAATCGAAATCAGTCg  >  1:767288/1‑93 (MQ=255)

                                                                                      tggcctggtGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATGGAATCGAAATCAGTCg  >  2:2055456/1‑93 (MQ=255)

TATGCGGGATATCATCATTTCATCATGATGTCTTTGGTGAGCGGTGAACACAATACACCTGCGCTGTCTCTTCAGGATGAATCCCCTGGTCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTTAGGTCACTTAGACGCTACTATCATTTATCCAATGGCATGGAATCGAAATCAGTCG  >  NC_000913/1222645‑1222823

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`