BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,291,867	A→G	R93R (CGT→CGC)	hns ←	DNA‑binding protein HLP‑II

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,291,867	0	A	G	100.0%	473.0 / NA	147	R93R (CGT→CGC)	hns	DNA‑binding protein HLP‑II
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (80/67); total (80/67)

Only 100 of 157 total aligned reads displayed.

ATTGCTTTTTTGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGACGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGATCAGCAT  >  NC_000913/1291778‑1291956

aTTGCTTTTTTGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGgcgc                                                                                        >  1:4254458/1‑93 (MQ=255)

aTTGCTTTTTTGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATATTGCCGGgcgc                                                                                        >  1:4254459/1‑93 (MQ=255)

 ttGCTTTTTTGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCt                                                                                       >  1:3179572/1‑93 (MQ=255)

 ttGCTTTTTTGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCt                                                                                       <  1:789056/93‑1 (MQ=255)

 ttGCTTTTTTGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGGTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCt                                                                                       >  1:1761886/1‑93 (MQ=255)

  tGCTTTTTTGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTg                                                                                      >  2:4336753/1‑93 (MQ=255)

  tGCTTTTTTGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTg                                                                                      >  1:1680930/1‑93 (MQ=255)

   gCTTTTTTGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGa                                                                                     >  1:559532/1‑93 (MQ=255)

   gCTTATTTGATTACAGATGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGACGGGCGATGa                                                                                     <  2:4195829/93‑1 (MQ=38)

       ttttGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCAc                                                                                 <  2:1470589/93‑1 (MQ=255)

       ttttGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCAc                                                                                 <  2:1925353/93‑1 (MQ=255)

         ttGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGt                                                                               <  1:2315885/93‑1 (MQ=255)

          tGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCGCGtt                                                                              <  2:1018082/93‑1 (MQ=255)

          tGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGtt                                                                              >  2:1748312/1‑93 (MQ=255)

          tGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGtt                                                                              <  2:4354180/93‑1 (MQ=255)

          tGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGGTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTTAGCACGtt                                                                              >  1:1957040/1‑93 (MQ=255)

           gATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCAGGGCGCTGAGCACGttt                                                                             <  1:597591/93‑1 (MQ=255)

           gATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGGTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGttt                                                                             >  2:264821/1‑93 (MQ=255)

            aTTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTa                                                                            <  1:1493787/93‑1 (MQ=255)

             ttACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAg                                                                           >  1:276574/1‑93 (MQ=255)

             ttACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAg                                                                           >  1:2886061/1‑93 (MQ=255)

             ttACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAg                                                                           >  2:1952221/1‑93 (MQ=255)

              tACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGc                                                                          <  1:3852400/93‑1 (MQ=255)

                cAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCTGGGCGCTGAGCACGTTTAGCtt                                                                        >  1:4176868/1‑93 (MQ=255)

                 aGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCttt                                                                       <  1:598554/93‑1 (MQ=255)

                 aGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCttt                                                                       <  2:2308041/93‑1 (MQ=255)

                 aGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCttt                                                                       <  1:4165074/93‑1 (MQ=255)

                 aGCTGGAGTACGGCCTTGCACAGTCTATTGTTTAGCTTCGCCGTTTTCGTCAACATAGCTATATTTTGCCGGGCGCTGATCACGTTTAGCttt                                                                       <  1:4165073/93‑1 (MQ=255)

                   cTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGGTTAGCTTTgg                                                                     >  2:4702252/1‑93 (MQ=255)

                   cTGCAGTACGTCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTgg                                                                     <  1:2039794/93‑1 (MQ=255)

                    tGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGt                                                                    >  2:721975/1‑93 (MQ=255)

                    tGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGt                                                                    <  2:3623168/93‑1 (MQ=255)

                    tGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTCGt                                                                    >  1:2002756/1‑93 (MQ=255)

                     ggAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTg                                                                   >  2:1127753/1‑93 (MQ=255)

                     ggAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTg                                                                   >  1:3523707/1‑93 (MQ=255)

                        gTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCa                                                                >  1:1414451/1‑93 (MQ=255)

                         tACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAg                                                               >  1:1013599/1‑93 (MQ=255)

                         tACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAg                                                               >  1:3670843/1‑93 (MQ=255)

                          aCGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGa                                                              >  2:300154/1‑93 (MQ=255)

                           cgtccTTGGCCAGTCCACGTTTTAGCTTCGCCGGTTTCGTCCACGCAGACATATTCTGCCGGACGCTGAGCACGTTTATCTTTGGAGCCCGAt                                                             >  2:3277385/4‑93 (MQ=255)

                                ttGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAAc                                                        >  2:552667/1‑93 (MQ=255)

                                  ggCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACgg                                                      <  1:1764228/93‑1 (MQ=255)

                                     cAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGgcag                                                   >  1:2062843/1‑93 (MQ=255)

                                       gTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGgcagca                                                 >  1:2575622/1‑93 (MQ=255)

                                         ccAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAg                                               <  1:1084334/93‑1 (MQ=255)

                                           agtttttAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGc                                             <  2:2304116/90‑1 (MQ=255)

                                           aGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGc                                             <  2:386193/93‑1 (MQ=255)

                                           aGGTTTTAGTTTCGCCGTTTTCGGCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAggg                                             >  2:2945034/1‑92 (MQ=255)

                                            ggTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCt                                            >  1:3470534/1‑93 (MQ=255)

                                             gTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTa                                           >  1:2690706/1‑93 (MQ=255)

                                             gTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTa                                           >  1:2690707/1‑93 (MQ=255)

                                               tttAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTAtt                                         <  1:1105572/93‑1 (MQ=255)

                                               tttAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTAtt                                         <  2:1042950/93‑1 (MQ=255)

                                                ttAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTc                                        >  1:3910332/1‑93 (MQ=255)

                                                ttAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTc                                        <  2:1585237/93‑1 (MQ=255)

                                                ttAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTc                                        <  2:1585236/93‑1 (MQ=255)

                                                 tAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTca                                       <  2:2668951/93‑1 (MQ=255)

                                                 tAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTca                                       <  1:1175901/93‑1 (MQ=255)

                                                  aGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGACAGGCTATTcag                                      >  1:1132801/1‑93 (MQ=255)

                                                   gTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCCAGGCTATTcagc                                     >  2:828167/1‑93 (MQ=255)

                                                   gTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTcagc                                     >  2:828168/1‑93 (MQ=255)

                                                    tttCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTcagca                                    >  1:3722925/1‑93 (MQ=255)

                                                     ttCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTcagcag                                   <  2:3613533/93‑1 (MQ=255)

                                                       cGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAgtt                                 <  2:3195283/93‑1 (MQ=255)

                                                        gCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAgttc                                >  1:2951270/1‑93 (MQ=255)

                                                         ccGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAgttcg                               >  2:2254346/1‑93 (MQ=255)

                                                          cGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAgttcgt                              >  2:326927/1‑93 (MQ=255)

                                                           gTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAgttcgtt                             >  1:2548372/1‑93 (MQ=255)

                                                            ttttCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAgttcgttc                            <  1:1566775/93‑1 (MQ=255)

                                                              ttCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCgg                          >  2:2723400/1‑93 (MQ=255)

                                                               tCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCggg                         <  1:50934/93‑1 (MQ=255)

                                                               tCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCggg                         <  2:4122603/93‑1 (MQ=255)

                                                                cGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGt                        <  1:4344100/93‑1 (MQ=255)

                                                                  tCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCa                      >  1:4491429/1‑93 (MQ=255)

                                                                   cAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCaa                     <  1:1566528/93‑1 (MQ=255)

                                                                    aaCGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAAt                    <  2:4238005/93‑1 (MQ=255)

                                                                    aaCGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAAt                    >  1:3323459/1‑93 (MQ=255)

                                                                    aaCGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAAt                    >  2:915293/1‑93 (MQ=255)

                                                                      cGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATAc                  <  2:2447247/93‑1 (MQ=255)

                                                                      cGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATAc                  <  2:2744874/93‑1 (MQ=255)

                                                                      cGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATAc                  >  1:3561124/1‑93 (MQ=255)

                                                                       gTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATAcc                 >  1:1067552/1‑93 (MQ=255)

                                                                        tAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGCGTCAATACCg                >  1:2710926/1‑93 (MQ=255)

                                                                          gCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTc              <  1:648351/93‑1 (MQ=255)

                                                                          gCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTc              <  1:4404483/93‑1 (MQ=255)

                                                                            tataTTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAg            >  1:1886327/1‑93 (MQ=255)

                                                                            tataTTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAg            >  1:4513003/1‑93 (MQ=255)

                                                                             atatTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCATTCGGGTCAATACCGTCAGc           <  2:315357/93‑1 (MQ=255)

                                                                              tatTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCg          >  1:2608264/1‑93 (MQ=255)

                                                                              tatTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCg          >  2:524254/1‑93 (MQ=255)

                                                                               atTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGa         >  2:654394/1‑93 (MQ=255)

                                                                                ttttGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGAt        <  2:2908648/93‑1 (MQ=255)

                                                                                ttttGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGAt        >  1:1723828/1‑93 (MQ=255)

                                                                                ttttGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGAt        >  1:296859/1‑93 (MQ=255)

                                                                                  ttGGCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGATCa      <  1:2290255/93‑1 (MQ=255)

                                                                                    gCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGATCAGc    >  1:548331/1‑93 (MQ=255)

                                                                                      cGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCTGGTCAATACCGTCAGCGATCAGCAt  >  2:2169179/1‑93 (MQ=255)

                                                                                      cGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGATCAGCAt  <  1:4348220/93‑1 (MQ=255)

                                                                                      cGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGATCAGCAt  <  2:4087566/93‑1 (MQ=255)

                                                                                      cGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGATCAGCAt  >  1:1325488/1‑93 (MQ=255)

ATTGCTTTTTTGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGACGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGATCAGCAT  >  NC_000913/1291778‑1291956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`