BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,340,692	C→T	S5F (TCC→TTC)	yciH →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,340,692	0	C	T	94.1%	327.2 / 3.6	102	S5F (TCC→TTC)	yciH	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (3/3); new base T (42/54); total (45/57)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01

Only 100 of 106 total aligned reads displayed.

ATTGGTCGCCCGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTCCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGCCCTAAAGGCGACGGTGTGGTGCGTA  >  NC_000913/1340602‑1340784

aTTGGTCGCCCGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCa                                                                                            >  1:145609/1‑93 (MQ=255)

 ttGGTCGCCCGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCaa                                                                                           >  1:555716/1‑93 (MQ=255)

  tGGTCGCCCGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAAc                                                                                          >  2:1252566/1‑93 (MQ=255)

   ggTCGCCCGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACa                                                                                         <  2:3931700/93‑1 (MQ=255)

   gctCGCCCGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACa                                                                                         <  1:1677380/91‑1 (MQ=255)

     tCGCCCGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGc                                                                                       >  2:3720109/1‑93 (MQ=255)

     tCGCCCGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGc                                                                                       >  2:3720108/1‑93 (MQ=255)

      cGCCCGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGcc                                                                                      <  1:3683415/93‑1 (MQ=255)

       gCCCTGTAACGCAATCGGTAGATCCAGCGCAGTCGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTCCATGATGAGTGATTTCAACAGCCg                                                                                     <  2:2333891/93‑1 (MQ=255)

       gCCCGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCg                                                                                     <  1:4119870/93‑1 (MQ=255)

       gCCCGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCg                                                                                     >  2:4526531/1‑93 (MQ=255)

       gCCCGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCg                                                                                     <  1:4534796/93‑1 (MQ=255)

         ccGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTc                                                                                   >  1:2214261/1‑93 (MQ=255)

         ccGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTc                                                                                   >  2:326816/1‑93 (MQ=255)

         ccGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTc                                                                                   >  2:529387/1‑93 (MQ=255)

          cGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCt                                                                                  >  2:304141/1‑93 (MQ=255)

          cGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCt                                                                                  <  2:1619370/93‑1 (MQ=255)

          cGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCt                                                                                  <  1:478695/93‑1 (MQ=255)

           ggTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTg                                                                                 >  2:4576745/1‑93 (MQ=255)

            gTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTgg                                                                                >  1:2600969/1‑93 (MQ=255)

            gTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTgg                                                                                <  1:2461019/93‑1 (MQ=255)

              aaCGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTc                                                                              <  2:3329044/93‑1 (MQ=255)

               aCGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCt                                                                             <  1:1006793/93‑1 (MQ=255)

               aCGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCt                                                                             >  2:4546281/1‑93 (MQ=255)

                    aTCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCa                                                                        >  2:1534969/1‑93 (MQ=255)

                      cGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAAc                                                                      <  2:3881660/93‑1 (MQ=255)

                         tAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGa                                                                   <  1:4120770/93‑1 (MQ=255)

                           gATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGaaa                                                                 <  1:3773906/93‑1 (MQ=255)

                             tCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAAcc                                                               <  1:2923045/93‑1 (MQ=255)

                             tCCAGCGCAGACGCTACAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACACCACGGAAccc                                                               <  2:4215899/93‑1 (MQ=255)

                                aGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGa                                                            <  1:3844289/93‑1 (MQ=255)

                                aGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGACGTCTGGTCTACTCAACGGAAACCGGa                                                            >  2:467324/1‑93 (MQ=255)

                                  ctcAGACGCTGAAAGCGATGAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACg                                                          <  2:3760991/91‑1 (MQ=255)

                                  cgcAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACg                                                          <  2:1882060/93‑1 (MQ=255)

                                  cgcAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACg                                                          >  2:618833/1‑93 (MQ=255)

                                   gcAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGt                                                         <  1:492522/93‑1 (MQ=255)

                                    cAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGACTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACgca                                                        >  1:1977607/1‑91 (MQ=255)

                                     aGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTAt                                                       <  1:3847194/93‑1 (MQ=255)

                                     aGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTAt                                                       <  2:261653/93‑1 (MQ=255)

                                      gACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTAtt                                                      <  2:4121945/93‑1 (MQ=255)

                                        cGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATtga                                                    <  2:2745689/93‑1 (MQ=255)

                                        cGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATtga                                                    >  1:4677013/1‑93 (MQ=255)

                                        cGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATtga                                                    <  2:2953402/93‑1 (MQ=255)

                                         gCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATtgat                                                   >  2:31909/1‑93 (MQ=255)

                                         gCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATtgat                                                   <  1:3795545/93‑1 (MQ=255)

                                         gCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATtgat                                                   <  2:1831920/93‑1 (MQ=255)

                                           tGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATtgatga                                                 <  2:3931080/93‑1 (MQ=255)

                                           tGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATtgatga                                                 <  1:2821802/93‑1 (MQ=255)

                                           tGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGAGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATtgatga                                                 <  2:2902162/93‑1 (MQ=255)

                                              aaGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGcc                                              >  2:4643080/1‑93 (MQ=255)

                                               aGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGccc                                             >  2:3777372/1‑93 (MQ=255)

                                                gCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCa                                            <  1:4300494/93‑1 (MQ=255)

                                                gCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCa                                            >  2:2886199/1‑93 (MQ=255)

                                                gCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCa                                            >  1:3229228/1‑93 (MQ=255)

                                                  gATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCaaa                                          <  1:4198510/93‑1 (MQ=255)

                                                   aTCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAg                                         >  2:1128637/1‑93 (MQ=255)

                                                   aTCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAg                                         >  2:4742087/1‑93 (MQ=255)

                                                   aTCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAg                                         >  1:3585911/1‑93 (MQ=255)

                                                   aTCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATAAGCCCAAAg                                         >  2:1128636/1‑93 (MQ=255)

                                                    tCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGc                                        <  1:4132374/93‑1 (MQ=255)

                                                    tCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTCCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGc                                        <  1:790748/93‑1 (MQ=255)

                                                    tCAACACGTTTTTACTGCGAAGTGCATCCTGAGGGATTTCAACAGCCATCTAATATACTCAACGGAAACCGTACGTATTGATTACCCCAACGc                                        >  2:3016361/1‑93 (MQ=255)

                                                     cAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCg                                       >  1:2743915/1‑93 (MQ=255)

                                                     cAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCg                                       <  1:1533989/93‑1 (MQ=255)

                                                     cAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCg                                       <  1:525518/93‑1 (MQ=255)

                                                       aCGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGc                                     >  2:3880108/1‑93 (MQ=255)

                                                       aCGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGc                                     >  2:3880109/1‑93 (MQ=255)

                                                       aCGCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGc                                     <  2:3100167/93‑1 (MQ=255)

                                                       aCGCCTCTTTACAGCGGAGTGCATGATGAGTGATTCCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGc                                     >  2:3821009/1‑93 (MQ=255)

                                                         gCCTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGccc                                   >  1:2145088/1‑93 (MQ=255)

                                                          ccTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGcccc                                  >  2:698200/1‑93 (MQ=255)

                                                          ccTCTTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGcccc                                  <  2:2287953/93‑1 (MQ=255)

                                                           ctctTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCt                                 >  2:2167413/1‑93 (MQ=255)

                                                           ctctTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCt                                 <  2:1589495/93‑1 (MQ=255)

                                                           ctctTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCt                                 <  1:1967074/93‑1 (MQ=255)

                                                           ctctTTACAGCGGAGTGCATGATGAGTGATTCCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCt                                 <  2:238213/93‑1 (MQ=255)

                                                            tctTTACAGCGGAGTGCATGATGAGTTATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTAATGAGCCCAAAGCGGCCCCTg                                <  2:4285368/93‑1 (MQ=255)

                                                            tctTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTg                                >  2:1539830/1‑93 (MQ=255)

                                                             ctTTACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGt                               <  2:4479843/93‑1 (MQ=255)

                                                              tttACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTa                              <  2:2996510/93‑1 (MQ=255)

                                                                tACAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACg                            >  2:4248294/1‑93 (MQ=255)

                                                                 aCAGCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGc                           <  2:3050485/93‑1 (MQ=255)

                                                                    gCGGAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGCCCt                        >  1:3900116/1‑93 (MQ=255)

                                                                    gCGGAGTGCATGATGAGTGATTCCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGCCCt                        <  2:4286125/93‑1 (MQ=255)

                                                                       gAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGCCCTaaa                     <  1:2167413/93‑1 (MQ=255)

                                                                       gAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGCCCTaaa                     <  1:831447/93‑1 (MQ=255)

                                                                       gAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGCCCTaaa                     >  2:2856952/1‑93 (MQ=255)

                                                                       gAGTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGCCCTaaa                     <  1:3966566/93‑1 (MQ=255)

                                                                         gTGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGCCCTAAAgg                   >  2:1920848/1‑93 (MQ=255)

                                                                          tGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGCCCTAAAGGc                  >  1:3753367/1‑93 (MQ=255)

                                                                          tGCATGATGAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGCCCTAAAGGc                  <  2:4238924/93‑1 (MQ=255)

                                                                             atgatgAGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGCCCTAAAGGCGAc               <  1:4619705/93‑1 (MQ=255)

                                                                               gatgaGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGCCCTAAAGGCGACgg             <  1:1724226/93‑1 (MQ=255)

                                                                               gatgaGTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGCCCTAAAGGCGACgg             <  2:2458941/93‑1 (MQ=255)

                                                                                  gaGTGATTCCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGACCCTGTACGCCCTAAAGGCGACggggg          >  1:3795821/1‑90 (MQ=255)

                                                                                    gTGATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGCCCTAAAGGCGACGGTgtgg        <  2:1760624/93‑1 (MQ=255)

                                                                                      gATTTCAACAGCCGTCTGGTCTGCTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGCCCTAAAGGCGACGGTgtggtg      <  1:3819986/93‑1 (MQ=255)

                                                                                      gATTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGCCCTAAAGGCGACGGTgtggtg      >  2:1831392/1‑93 (MQ=255)

                                                                                       aTTTCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGCCCTAAAGGCGACGGTGTGGTGc     >  1:199554/1‑93 (MQ=255)

                                                                                          ccAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGCCCTAAAGGCGACGGTGTGGTGCGTa  <  1:4134243/93‑1 (MQ=255)

ATTGGTCGCCCGGTAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGATTCCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGCCCTAAAGGCGACGGTGTGGTGCGTA  >  NC_000913/1340602‑1340784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`