BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,490,510	C→T	S6L (TCA→TTA)	trg →	methyl‑accepting chemotaxis protein III

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,490,510	0	C	T	100.0%	635.3 / NA	179	S6L (TCA→TTA)	trg	methyl‑accepting chemotaxis protein III
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (77/102); total (77/102)

Only 100 of 181 total aligned reads displayed.

TGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTCACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTT  >  NC_000913/1490422‑1490599

tGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAg                                                                                       <  2:4135178/93‑1 (MQ=255)

   tCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGa                                                                                    >  1:1418979/1‑93 (MQ=255)

   tCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGa                                                                                    >  1:3122020/1‑93 (MQ=255)

   tCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGa                                                                                    <  1:933446/93‑1 (MQ=255)

    cATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGAt                                                                                   >  2:3493298/1‑93 (MQ=255)

     aTAAGTAATTACCGTCGAGTGCGGATGACTTTCTATCAGGAGTAACCTTGGGCGAGAGACAACGGTAATGAATACACCGCCCTTCCAGCGAtt                                                                                  <  2:1105361/93‑1 (MQ=255)

      tAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGATAACGGTAATGAATACAACTCCCTTACAGCGATTa                                                                                 <  1:3062618/93‑1 (MQ=255)

      tAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTa                                                                                 <  2:2465854/93‑1 (MQ=255)

      tAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTa                                                                                 <  1:3235054/93‑1 (MQ=255)

      tAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTa                                                                                 >  2:425836/1‑93 (MQ=255)

       aaGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAg                                                                                <  2:3716894/93‑1 (MQ=255)

        aGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAgg                                                                               <  2:1452407/93‑1 (MQ=255)

        aGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAgg                                                                               >  2:3383913/1‑93 (MQ=255)

         gTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGt                                                                              >  1:4076175/1‑93 (MQ=255)

         gTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGt                                                                              >  1:3363530/1‑93 (MQ=255)

           aaTTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGttt                                                                            >  1:2508652/1‑93 (MQ=255)

             ttACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGttttt                                                                          <  1:2164958/93‑1 (MQ=255)

              tACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGtttttt                                                                         <  2:2587524/93‑1 (MQ=255)

               tccGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTg                                                                        <  1:3853387/92‑1 (MQ=255)

               aCCGTCAAGTGCCGATGACTTTCTATCAGGAGTAACCCTGGACGAGGGACAACGTTACTGACTCCAACTCCCTACCAGCGATCAGGTTGTTTg                                                                        >  1:1923030/1‑93 (MQ=255)

               aCCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTg                                                                        >  1:1623536/1‑93 (MQ=255)

                ccGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGc                                                                       <  2:327516/93‑1 (MQ=255)

                  gTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcat                                                                     >  2:2641924/1‑93 (MQ=255)

                  gTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcat                                                                     >  2:850296/1‑93 (MQ=255)

                  gTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcat                                                                     >  1:1952231/1‑93 (MQ=255)

                  gTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcat                                                                     >  1:2076488/1‑93 (MQ=255)

                    cAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcatca                                                                   <  2:48446/93‑1 (MQ=255)

                    cAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcatca                                                                   <  1:4740472/93‑1 (MQ=255)

                      aGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcatcaca                                                                 <  1:2155500/93‑1 (MQ=255)

                       gTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcatcacat                                                                >  2:620846/1‑93 (MQ=255)

                        tGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcatcacatc                                                               <  2:4153889/93‑1 (MQ=255)

                         gcggATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcatcacatca                                                              <  2:2119790/90‑1 (MQ=255)

                         gCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcatcacatca                                                              <  1:1513206/93‑1 (MQ=255)

                         gCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcatcacatca                                                              >  1:3916109/1‑93 (MQ=255)

                           cGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAgg                                                            >  2:3131239/1‑93 (MQ=255)

                            gATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAggt                                                           <  1:2889794/93‑1 (MQ=255)

                            gATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAggt                                                           <  1:1149463/93‑1 (MQ=255)

                            gATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAggt                                                           >  2:257485/1‑93 (MQ=255)

                             aTGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAggtt                                                          <  2:4095226/93‑1 (MQ=255)

                              tGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAggttg                                                         >  2:1035087/1‑93 (MQ=255)

                                aCTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAggttggt                                                       <  2:4643637/93‑1 (MQ=255)

                                 cTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAggttggtt                                                      >  2:4494053/1‑93 (MQ=255)

                                   ttCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTcc                                                    >  1:1960245/1‑93 (MQ=255)

                                    tCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCg                                                   >  2:3312720/1‑93 (MQ=255)

                                    tCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCg                                                   >  1:4255906/1‑93 (MQ=255)

                                       aTCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTa                                                <  2:3964497/93‑1 (MQ=255)

                                       aTCAGGAATAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTa                                                <  1:3564923/93‑1 (MQ=255)

                                        tCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAt                                               <  1:4281858/93‑1 (MQ=255)

                                           ggAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTg                                            >  2:2415423/1‑93 (MQ=255)

                                           ggAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTg                                            <  2:2277667/93‑1 (MQ=255)

                                              gcaaaCCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCt                                         >  1:3977663/3‑93 (MQ=255)

                                              gTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCt                                         <  1:1909888/93‑1 (MQ=255)

                                              gTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCt                                         >  2:4456239/1‑93 (MQ=255)

                                               tAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTg                                        >  1:3902579/1‑93 (MQ=255)

                                               tAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTg                                        >  2:16787/1‑93 (MQ=255)

                                                aaaCCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGc                                       <  1:1658282/93‑1 (MQ=255)

                                                aaaCCTGGAAGAGAGACAACGGTAATGAATACAACGCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGc                                       <  1:760210/93‑1 (MQ=255)

                                                 aaCCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCa                                      <  1:3833321/93‑1 (MQ=255)

                                                  aCCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCAt                                     <  2:643284/93‑1 (MQ=255)

                                                  aCCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCAt                                     >  1:1749394/1‑93 (MQ=255)

                                                  aCCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCAt                                     >  1:3802521/1‑93 (MQ=255)

                                                   ccTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCAtt                                    <  2:1372177/93‑1 (MQ=255)

                                                       gACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAg                                <  1:1399060/93‑1 (MQ=255)

                                                       gACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAg                                >  1:3734965/1‑93 (MQ=255)

                                                       gACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAg                                <  2:439890/93‑1 (MQ=255)

                                                         cGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGc                              >  2:304914/1‑93 (MQ=255)

                                                         cGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGc                              <  2:2889940/93‑1 (MQ=255)

                                                         cGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGc                              <  2:2329875/93‑1 (MQ=255)

                                                           agagaCAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCgg                            >  1:3716864/1‑93 (MQ=255)

                                                           agagaCAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCgg                            >  2:3601485/1‑93 (MQ=255)

                                                           agagaCAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCgg                            >  2:3601484/1‑93 (MQ=255)

                                                            gagaCAACGGTAATGAATGCAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGt                           <  2:3566182/93‑1 (MQ=255)

                                                              gaCAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTAt                         <  1:267787/93‑1 (MQ=255)

                                                               aCAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATc                        >  1:4048532/1‑93 (MQ=255)

                                                               aCAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATc                        <  1:237313/93‑1 (MQ=255)

                                                               aCAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATc                        <  1:597094/93‑1 (MQ=255)

                                                                cAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCt                       <  1:1669375/93‑1 (MQ=255)

                                                                 aaCGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCtt                      <  1:4004740/93‑1 (MQ=255)

                                                                  aCGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTa                     <  2:2096335/93‑1 (MQ=255)

                                                                  aCGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTa                     >  2:3155213/1‑93 (MQ=255)

                                                                   ctgTAATGAATACAACTGCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAg                    <  2:4272029/91‑1 (MQ=255)

                                                                   cGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAg                    <  2:525732/93‑1 (MQ=255)

                                                                      tAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTc                 >  1:3277930/1‑93 (MQ=255)

                                                                      tAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTc                 >  2:2959685/1‑93 (MQ=255)

                                                                      tAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTc                 <  2:3692284/93‑1 (MQ=255)

                                                                       aaTGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCt                >  1:4242949/1‑93 (MQ=255)

                                                                         tGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTAt              >  2:2838963/1‑93 (MQ=255)

                                                                         tGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTAt              <  2:1976505/93‑1 (MQ=255)

                                                                              aCAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCa         <  1:898947/93‑1 (MQ=255)

                                                                               cAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCAt        <  1:2938601/93‑1 (MQ=255)

                                                                                aaCTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCAtt       <  1:19345/93‑1 (MQ=255)

                                                                                aaCTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCAtt       <  1:4679698/93‑1 (MQ=255)

                                                                                  cTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTaa     <  2:2954563/93‑1 (MQ=255)

                                                                                   tCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAg    <  1:2711784/93‑1 (MQ=255)

                                                                                   tCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAg    >  2:4333548/1‑93 (MQ=255)

                                                                                    cccTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGt   <  2:3819037/93‑1 (MQ=255)

                                                                                    cccTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGt   <  1:2789219/93‑1 (MQ=255)

                                                                                    cccTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGt   >  2:719035/1‑93 (MQ=255)

                                                                                     ccTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGtt  >  1:2051232/1‑93 (MQ=255)

                                                                                     ccTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGtt  >  1:3935850/1‑93 (MQ=255)

TGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTCACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTT  >  NC_000913/1490422‑1490599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`