BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,617,966	T→C	N125N (AAT→AAC)	marA →	MarA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,617,966	0	T	C	98.6%	678.1 / ‑0.7	209	N125N (AAT→AAC)	marA	MarA
Reads supporting (aligned to +/- strand): ref base T (2/1); new base C (111/95); total (113/96)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.49e-02

Only 100 of 213 total aligned reads displayed.

CCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTT  >  NC_000913/1617876‑1618058

ccGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCa                                                                                            >  2:4389504/1‑93 (MQ=255)

 cGAACCTTCAAAAATTACTTTGATGTTTCGCCGCATAAATACCGGATGACCAATATGCAGGCCGCATCTCCCTGTTTACATCCATTAAACCAt                                                                                           >  1:667731/1‑93 (MQ=255)

 cGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCAt                                                                                           <  2:2266703/93‑1 (MQ=255)

 cGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCAt                                                                                           >  2:3606048/1‑93 (MQ=255)

   aaCCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTa                                                                                         >  1:310279/1‑93 (MQ=255)

   aaCCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTa                                                                                         >  2:787074/1‑93 (MQ=255)

   aaCCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACAGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTa                                                                                         >  2:2549184/1‑93 (MQ=255)

    aCCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTac                                                                                        <  2:1765977/93‑1 (MQ=255)

     ccTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTaca                                                                                       >  2:4414157/1‑93 (MQ=255)

      cTTCAATATTTACTTTGATGTTCCGCCGCATAACTCCCGGATGACCAATATGCAGGGCGACTCGCGCTTTTTACATCCATTAAACCATTaccc                                                                                      <  1:4206798/93‑3 (MQ=255)

      cTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTacaa                                                                                      <  1:3796509/93‑1 (MQ=255)

       ttCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTacaac                                                                                     <  1:3751404/93‑1 (MQ=255)

       ttCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTacaac                                                                                     >  2:2362303/1‑93 (MQ=255)

        tCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTacaaca                                                                                    >  1:768229/1‑93 (MQ=255)

         cAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAg                                                                                   >  1:2500822/1‑93 (MQ=255)

           aaaaTTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCt                                                                                 >  2:1383411/1‑93 (MQ=255)

           aaaaTTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCt                                                                                 <  1:4747192/93‑1 (MQ=255)

              aTTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGt                                                                              >  2:4617528/1‑93 (MQ=255)

                 aCTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGa                                                                           <  1:4645560/93‑1 (MQ=255)

                  cTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGaa                                                                          <  1:3924262/93‑1 (MQ=255)

                   tttGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGaaa                                                                         >  2:103295/1‑93 (MQ=255)

                    ttGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGaaaa                                                                        <  1:3314167/93‑1 (MQ=255)

                    ttGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGaaaa                                                                        >  1:1472604/1‑93 (MQ=255)

                    ttGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGaaaa                                                                        >  2:4655336/1‑93 (MQ=255)

                     tGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAAc                                                                       <  1:3882953/93‑1 (MQ=255)

                      gATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACg                                                                      >  2:321207/1‑93 (MQ=255)

                      gATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACg                                                                      >  1:2991786/1‑93 (MQ=255)

                      gATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACg                                                                      >  2:3400379/1‑93 (MQ=255)

                       aTGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGt                                                                     <  2:4007550/93‑1 (MQ=255)

                       aTGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGt                                                                     <  1:492319/93‑1 (MQ=255)

                        tGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTg                                                                    <  2:1245493/93‑1 (MQ=255)

                        tGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTg                                                                    >  1:1877752/1‑93 (MQ=255)

                         gTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGa                                                                   >  2:1468717/1‑93 (MQ=255)

                         gTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGa                                                                   >  2:3244940/1‑93 (MQ=255)

                         gTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGa                                                                   <  2:657253/93‑1 (MQ=255)

                               ccgcATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGt                                                             >  2:4171498/1‑93 (MQ=255)

                               ccgcATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGt                                                             >  2:1430865/1‑93 (MQ=255)

                                 gcATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCa                                                           >  1:447567/1‑93 (MQ=255)

                                  cATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCAc                                                          >  1:4028204/1‑93 (MQ=255)

                                  cATAAATACCGGAGGACCAATACGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCAc                                                          <  2:4082434/93‑1 (MQ=255)

                                   aTAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACt                                                         >  1:1318453/1‑93 (MQ=255)

                                    tAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTg                                                        <  2:2770056/93‑1 (MQ=255)

                                    tAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTg                                                        <  2:2067098/93‑1 (MQ=255)

                                      aaTACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAg                                                      >  1:980074/1‑93 (MQ=255)

                                        tACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGc                                                    >  1:4361839/1‑93 (MQ=255)

                                        tACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGc                                                    <  1:201444/93‑1 (MQ=255)

                                        tACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGc                                                    >  2:713221/1‑93 (MQ=255)

                                         aCCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCa                                                   >  1:1048292/1‑93 (MQ=255)

                                           cGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAAt                                                 >  2:84008/1‑93 (MQ=255)

                                            ggATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATc                                                <  1:1219491/93‑1 (MQ=255)

                                            ggATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATc                                                >  1:293873/1‑93 (MQ=255)

                                             gATTACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCa                                               <  1:4412300/93‑1 (MQ=255)

                                             gATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCa                                               >  1:4390267/1‑93 (MQ=255)

                                             gATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCa                                               >  1:2493172/1‑93 (MQ=255)

                                              aTGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCAt                                              <  2:1309776/93‑1 (MQ=255)

                                              aTGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCAt                                              >  2:1494839/1‑93 (MQ=255)

                                               tGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATg                                             >  1:911610/1‑93 (MQ=255)

                                                gACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGa                                            >  2:1013904/1‑93 (MQ=255)

                                                  ccAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGaaa                                          <  2:3750653/93‑1 (MQ=255)

                                                    aaTATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAAcc                                        <  1:829171/93‑1 (MQ=255)

                                                    aaTATGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAAcc                                        <  2:4602006/93‑1 (MQ=255)

                                                      tatGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCAc                                      >  1:1593966/1‑93 (MQ=255)

                                                       atGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACt                                     <  1:2097884/93‑1 (MQ=255)

                                                        tGCAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACtt                                    <  1:3828160/93‑1 (MQ=255)

                                                          tatggCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTc                                  <  1:3223965/90‑1 (MQ=255)

                                                          cAGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTc                                  <  1:2829901/93‑1 (MQ=255)

                                                           aGGGCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCa                                 <  2:3819486/93‑1 (MQ=255)

                                                             ggCGAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATc                               <  1:4104563/93‑1 (MQ=255)

                                                                gAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGc                            >  2:2032745/1‑93 (MQ=255)

                                                                gAATCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGc                            >  2:3150636/1‑93 (MQ=255)

                                                                  aTCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCaa                          >  1:648239/1‑93 (MQ=255)

                                                                   tCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAAt                         >  2:2196064/1‑93 (MQ=255)

                                                                   tCGCGCTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAAt                         <  2:3730505/93‑1 (MQ=255)

                                                                    cgcgCTTTTTACATCCGTTAAACCATTACAACAGCTAGTTGACAACGTGACAACGTCACTGAGGCACTCATGAAACCACTTTCCTCCGCCATa                        <  2:4200170/93‑1 (MQ=255)

                                                                     gcgcTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATag                       >  2:2845144/1‑93 (MQ=255)

                                                                      cgcTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATagc                      <  1:273725/93‑1 (MQ=255)

                                                                      cgcTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATagc                      <  1:2261533/93‑1 (MQ=255)

                                                                       gcTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATagca                     >  1:1745104/1‑93 (MQ=255)

                                                                       gcTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATagca                     <  1:3058324/93‑1 (MQ=255)

                                                                       gcTTTTTACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATagca                     <  2:2792776/93‑1 (MQ=255)

                                                                         tttttACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATagcagc                   <  2:3525693/93‑1 (MQ=255)

                                                                         tttttACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATagcagc                   <  2:1707412/93‑1 (MQ=255)

                                                                          ttttACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCt                  <  2:1637257/93‑1 (MQ=255)

                                                                          ttttACATCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCt                  <  2:2941290/93‑1 (MQ=255)

                                                                                 tCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTa           >  1:3606803/1‑93 (MQ=255)

                                                                                 tCCATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACGGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTa           >  1:1000395/1‑93 (MQ=255)

                                                                                  ccATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTAt          <  1:1930612/93‑1 (MQ=255)

                                                                                  ccATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTAt          <  2:56436/93‑1 (MQ=255)

                                                                                  ccATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTAt          <  2:2677433/93‑1 (MQ=255)

                                                                                   cATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTAtt         >  2:3066585/1‑93 (MQ=255)

                                                                                   cATTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTAtt         >  1:1950987/1‑93 (MQ=255)

                                                                                    aTTAAACCATTACAACAGCTAGTTGAAAACGTTACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATtc        <  2:380639/93‑1 (MQ=255)

                                                                                    aTTAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATtc        <  2:3157427/93‑1 (MQ=255)

                                                                                     ttAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATtct       >  2:619923/1‑93 (MQ=255)

                                                                                     ttAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATtct       >  2:2289316/1‑93 (MQ=255)

                                                                                     ttAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATtct       <  2:1834035/93‑1 (MQ=255)

                                                                                      tAAACCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATtctc      <  1:2977949/93‑1 (MQ=255)

                                                                                       aaaCCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCATTTTCATCCGCAATAGCAGCTGCGCTTATTctct     >  2:2068692/1‑93 (MQ=255)

                                                                                       aaaCCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTctct     <  2:3792689/93‑1 (MQ=255)

                                                                                       aaaCCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTctct     >  1:3456879/1‑93 (MQ=255)

CCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTT  >  NC_000913/1617876‑1618058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`