Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,705,521 C→T V193V (GTC→GTT b1629 → putative membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,705,5210CT99.2% 461.2 / ‑5.1 133V193V (GTC→GTTb1629putative membrane protein
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base T (60/72);  total (60/73)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.58e-01

Only 100 of 137 total aligned reads displayed.

GATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCAT  >  NC_000913/1705429‑1705610
                                                                                            |                                                                                         
gaTAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTc                                                                                           >  1:178490/1‑93 (MQ=255)
  tAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGt                                                                                         >  1:4655103/1‑93 (MQ=255)
   aaGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTa                                                                                        >  1:3540917/1‑93 (MQ=255)
   aaGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTa                                                                                        >  1:159149/1‑93 (MQ=255)
    aGATTGAACCGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTag                                                                                       <  1:4327366/93‑1 (MQ=255)
    aGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTag                                                                                       >  1:406083/1‑93 (MQ=255)
    aGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTag                                                                                       >  1:2309885/1‑93 (MQ=255)
      aTTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTagag                                                                                     >  2:3133403/1‑93 (MQ=255)
       ttGAAACGTTGATTATCAACGCTGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAgg                                                                                    >  1:852044/1‑93 (MQ=255)
       ttGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAgg                                                                                    >  2:2339482/1‑93 (MQ=255)
       ttGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAgg                                                                                    >  1:1245291/1‑93 (MQ=255)
         gAAACGTTGATTAGCAACGCGGCGGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGt                                                                                  <  2:428774/93‑1 (MQ=255)
          aaaCGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTa                                                                                 <  1:3235517/93‑1 (MQ=255)
           aaCGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTAt                                                                                >  2:2658681/1‑93 (MQ=255)
            aCGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTAtt                                                                               >  1:147422/1‑93 (MQ=255)
            aCGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTAtt                                                                               <  1:4265066/93‑1 (MQ=255)
               ttGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGc                                                                            >  1:4528046/1‑93 (MQ=255)
                tGATTATCAACGCGGCTGAGTGCGAGCCGTACAGTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCa                                                                           <  1:4574654/93‑1 (MQ=255)
                 taTTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCAt                                                                          <  2:3587127/92‑1 (MQ=255)
                  aTTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCAtt                                                                         <  1:4549672/93‑1 (MQ=255)
                  aTTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCAtt                                                                         >  1:3962702/1‑93 (MQ=255)
                   ttATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTc                                                                        >  1:93422/1‑93 (MQ=255)
                   ttATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTc                                                                        <  1:1964269/93‑1 (MQ=255)
                    tATCACCGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCt                                                                       <  1:3531632/93‑1 (MQ=255)
                    tATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCTTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCt                                                                       <  2:4102525/93‑1 (MQ=255)
                     aTCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCtt                                                                      <  1:1899561/93‑1 (MQ=255)
                     aTCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCtt                                                                      <  1:171087/93‑1 (MQ=255)
                     aTCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCtt                                                                      >  2:4640694/1‑93 (MQ=255)
                       cAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTgc                                                                    <  1:4711783/93‑1 (MQ=255)
                       cAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTgc                                                                    <  1:1708920/93‑1 (MQ=255)
                       cAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTgc                                                                    <  2:4522101/93‑1 (MQ=255)
                       cAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTgc                                                                    <  2:2922342/93‑1 (MQ=255)
                        aaCGCGGTTGAGTGCGAGCCGTACATTACCGGCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTgcg                                                                   <  2:4320618/93‑1 (MQ=255)
                        aaCGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTgcg                                                                   >  1:3120753/1‑93 (MQ=255)
                        aaCGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTgcg                                                                   >  2:1962591/1‑93 (MQ=255)
                        aaCGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGGATTCGCATTCTTgcg                                                                   >  2:958292/1‑93 (MQ=255)
                         aCGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTgcgc                                                                  >  1:3402857/1‑93 (MQ=255)
                            cgGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGGTTGCGCGGCTCAGGTTGTAGAGGGGATTCGCATTCTTGCGCata                                                               >  1:1015756/1‑93 (MQ=255)
                            cgGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCata                                                               <  1:565082/93‑1 (MQ=255)
                            cgGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCata                                                               >  1:1849386/1‑93 (MQ=255)
                             ggCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGGATTCGCATTCTTGCGCatat                                                              >  2:47520/1‑93 (MQ=255)
                              gCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATAtt                                                             >  2:2375428/1‑93 (MQ=255)
                              gCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATAtt                                                             <  1:1935976/93‑1 (MQ=255)
                              gCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATAtt                                                             <  1:2654511/93‑1 (MQ=255)
                               cTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTc                                                            <  2:3283199/93‑1 (MQ=255)
                               cTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTc                                                            <  2:81787/93‑1 (MQ=255)
                               cTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTc                                                            <  2:1865769/93‑1 (MQ=255)
                               cTGAGGGCGAGCCGTACATTACGGCCGATGCCCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTc                                                            <  1:75770/93‑1 (MQ=255)
                                 gAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTg                                                          >  2:2084785/1‑93 (MQ=255)
                                      cGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGcc                                                     <  2:2830440/93‑1 (MQ=255)
                                        aGCCGTACATTACCGACGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCAc                                                   <  2:765322/93‑1 (MQ=255)
                                         gCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCAcg                                                  <  1:2972876/93‑1 (MQ=255)
                                         gCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCAcg                                                  >  1:1282890/1‑93 (MQ=255)
                                         gCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCAcg                                                  >  1:1576133/1‑93 (MQ=255)
                                          ccGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCAcgc                                                 <  1:4643841/93‑1 (MQ=255)
                                            gTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGa                                               >  1:4237937/1‑93 (MQ=255)
                                              aCATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGaaa                                             >  2:3515746/1‑93 (MQ=255)
                                              aCATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGaaa                                             >  1:2564402/1‑93 (MQ=255)
                                              aCATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGaaa                                             <  2:3949395/93‑1 (MQ=255)
                                               cATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAAt                                            >  1:4113928/1‑93 (MQ=255)
                                                 ttACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTc                                          <  2:2353913/93‑1 (MQ=255)
                                                   aCCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCtt                                        <  1:2538447/93‑1 (MQ=255)
                                                     cgccgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTAt                                      >  2:2333910/1‑93 (MQ=255)
                                                        cgATGTCCTTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCgg                                   <  1:1435177/93‑1 (MQ=255)
                                                        cgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCgg                                   <  1:1435029/93‑1 (MQ=255)
                                                        cgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGGTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGAAGCCACGCGAAATTCTTATCgg                                   >  2:3107816/1‑93 (MQ=255)
                                                         gATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGc                                  >  1:3550298/1‑93 (MQ=255)
                                                         gATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGc                                  <  1:2920714/93‑1 (MQ=255)
                                                          aTGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCa                                 <  1:752908/93‑1 (MQ=255)
                                                           tGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCAt                                <  2:550620/93‑1 (MQ=255)
                                                            gACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCAtt                               >  2:811969/1‑93 (MQ=255)
                                                              ccGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGa                             >  2:2903718/1‑93 (MQ=255)
                                                              ccGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGa                             <  1:4532358/93‑1 (MQ=255)
                                                               cGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGaa                            <  1:2185129/93‑1 (MQ=255)
                                                                gTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAg                           >  1:101693/1‑93 (MQ=255)
                                                                gTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAg                           >  1:3484600/1‑93 (MQ=255)
                                                                 tttGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGa                          <  2:992186/93‑1 (MQ=255)
                                                                  ttGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGAt                         <  1:3869005/93‑1 (MQ=255)
                                                                    gATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATaa                       >  2:4501900/1‑93 (MQ=255)
                                                                    gATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATaa                       <  1:4726111/93‑1 (MQ=255)
                                                                     gtGCAGGATTGCGCGGCTCAGGTTGTAGAGTGTATTCGCATTCTTGCGCATATTCTGCAGCCACTCGAAATTCTTATCGGCATTGAAGATAAc                      <  2:3443359/92‑1 (MQ=255)
                                                                     aTGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAAc                      <  2:4242968/93‑1 (MQ=255)
                                                                     aTGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAAc                      <  1:4536734/93‑1 (MQ=255)
                                                                         aGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAAc                  >  1:1164700/1‑93 (MQ=255)
                                                                          ggATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAAcc                 >  2:3431694/1‑93 (MQ=255)
                                                                          ggATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAAcc                 >  1:3640281/1‑93 (MQ=255)
                                                                           gATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCg                <  1:4633704/93‑1 (MQ=255)
                                                                             ttGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCa              >  2:3147322/1‑93 (MQ=255)
                                                                              tGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAg             <  1:169593/93‑1 (MQ=255)
                                                                                  cgGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGa         >  2:3775114/1‑93 (MQ=255)
                                                                                    gCTCAGGTGGTAGATGGTATTCGAATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGAtt       <  2:2603577/93‑1 (MQ=255)
                                                                                     cTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGAttt      >  1:3723444/1‑93 (MQ=255)
                                                                                     cTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGAGAttt      >  1:3723445/1‑93 (MQ=255)
                                                                                     cTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACAGCAGGCGAttc      >  1:2866131/1‑92 (MQ=255)
                                                                                      tCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTc     <  1:3928002/93‑1 (MQ=255)
                                                                                       cAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTcc    >  1:4442845/1‑93 (MQ=255)
                                                                                        aGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCa   <  2:2227012/93‑1 (MQ=255)
                                                                                        aGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCa   >  1:267513/1‑93 (MQ=255)
                                                                                         ggTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCAt  <  1:1032497/93‑1 (MQ=255)
                                                                                         ggTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCAt  <  2:2453005/93‑1 (MQ=255)
                                                                                            |                                                                                         
GATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCAT  >  NC_000913/1705429‑1705610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: