BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,765,691	A→G	V340A (GTG→GCG)	ydiJ ←	putative oxidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,765,691	0	A	G	98.3%	372.1 / ‑5.0	120	V340A (GTG→GCG)	ydiJ	putative oxidase
Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (59/58); total (60/60)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 126 total aligned reads displayed.

GCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGC  >  NC_000913/1765601‑1765780

gcACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGcgca                                                                                         >  2:336671/1‑93 (MQ=255)

gcACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGcgca                                                                                         >  1:4205230/1‑93 (MQ=255)

  cccgagTGCATTTCCCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATc                                                                                       <  1:3618120/90‑1 (MQ=255)

  acaGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATc                                                                                       >  1:4700514/1‑93 (MQ=255)

   caGGGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCg                                                                                      <  2:959427/93‑1 (MQ=255)

    agagTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCgg                                                                                     <  2:4119598/93‑1 (MQ=255)

    agagTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCgg                                                                                     >  2:2742352/1‑93 (MQ=255)

    agagTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCgg                                                                                     <  2:2190082/93‑1 (MQ=255)

    agagTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCgg                                                                                     >  1:3139088/1‑93 (MQ=255)

       gTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTaa                                                                                  >  2:3338258/1‑93 (MQ=255)

       gTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTaa                                                                                  <  2:173462/93‑1 (MQ=255)

           aTTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCaa                                                                              >  1:1041982/1‑93 (MQ=255)

            tttACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAAc                                                                             <  2:4279801/93‑1 (MQ=255)

            tttACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAAc                                                                             >  1:2522769/1‑93 (MQ=255)

              tACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTc                                                                           >  1:4153036/1‑93 (MQ=255)

              tACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTc                                                                           <  1:2716388/93‑1 (MQ=255)

                cccGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGc                                                                         <  1:2275155/93‑1 (MQ=255)

                cccGCTCATCAATCAGCGCCTAATCATCGCCAGCAAATTCCACAATGTGCAGCCCGAGAATCTCTTGATCAGGCGCATCGGTAATCAGCTCGc                                                                         <  2:779715/93‑1 (MQ=255)

                 ccGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCt                                                                        >  2:457420/1‑93 (MQ=255)

                 ccGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCt                                                                        <  2:4571763/93‑1 (MQ=255)

                 ccGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCt                                                                        <  1:356111/93‑1 (MQ=255)

                    cTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGAc                                                                     <  1:487457/93‑1 (MQ=255)

                    cTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGAc                                                                     >  1:2297053/1‑93 (MQ=255)

                     tcatcaATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACg                                                                    >  1:2093209/1‑93 (MQ=255)

                      catcaATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGActg                                                                   >  1:4112551/1‑91 (MQ=255)

                        tcaatcaGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGaa                                                                 <  1:3162545/93‑1 (MQ=255)

                         caatcaGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAAt                                                                <  1:1552181/93‑1 (MQ=255)

                          aatcaGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATg                                                               <  1:4109717/93‑1 (MQ=255)

                          aatcaGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATg                                                               >  2:4484070/1‑93 (MQ=255)

                           atcaGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGc                                                              >  1:1220553/1‑93 (MQ=255)

                              aGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAg                                                           <  1:2840141/93‑1 (MQ=255)

                                caccTCATCATCACCAGCAAGTTCCACAATGTTCAGCCCGATCAGCTCTTGGTCAGCCGCGTCGGTATTCAACTCGCTGACGGAATGCCAGAc                                                         <  2:1390584/91‑1 (MQ=255)

                                   cTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAat                                                      <  2:2945548/93‑1 (MQ=255)

                                    tcatcatcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAata                                                     >  1:1955781/1‑93 (MQ=255)

                                     catcatcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAatat                                                    >  2:2047749/1‑93 (MQ=255)

                                       tcatcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCt                                                  <  1:3046155/93‑1 (MQ=255)

                                       tcatcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCt                                                  >  1:1267046/1‑93 (MQ=255)

                                       tcatcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCt                                                  <  1:1902250/93‑1 (MQ=255)

                                       tcatcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCt                                                  <  1:3046154/93‑1 (MQ=255)

                                        catcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCtt                                                 <  1:4128849/93‑1 (MQ=255)

                                          tcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTcc                                               <  2:2073523/93‑1 (MQ=255)

                                            aCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCcg                                             >  1:2494760/1‑93 (MQ=255)

                                            aCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCcg                                             <  2:1633765/93‑1 (MQ=255)

                                             ccAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCcgc                                            >  1:2124228/1‑93 (MQ=255)

                                              cAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCcgcg                                           >  1:3595350/1‑93 (MQ=255)

                                                 cAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCa                                        <  1:160951/93‑1 (MQ=255)

                                                   aaTTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGa                                      >  1:369195/1‑93 (MQ=255)

                                                    aTTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGAt                                     >  2:3877869/1‑93 (MQ=255)

                                                    aTTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGAt                                     <  1:1946517/93‑1 (MQ=255)

                                                     ttCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGAtt                                    <  1:186156/93‑1 (MQ=255)

                                                     ttCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGAtt                                    <  2:1791856/93‑1 (MQ=255)

                                                      tCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTc                                   >  2:2434266/1‑93 (MQ=255)

                                                        cacaATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAg                                 <  2:1106014/93‑1 (MQ=255)

                                                         ccaATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGc                                <  1:558316/92‑1 (MQ=255)

                                                          caATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCa                               <  2:88693/93‑1 (MQ=255)

                                                          caATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCa                               <  2:1101993/93‑1 (MQ=255)

                                                          caATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCa                               <  1:4330917/93‑1 (MQ=255)

                                                           aaTGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCAc                              >  1:123026/1‑93 (MQ=255)

                                                           aaTGTCCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCAc                              <  2:4530917/93‑1 (MQ=255)

                                                             tgtgCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACtt                            <  1:2360304/93‑1 (MQ=255)

                                                             tGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACtt                            >  2:2123315/1‑93 (MQ=255)

                                                             tGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACtt                            >  2:140455/1‑93 (MQ=255)

                                                              gTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACttt                           <  1:874737/93‑1 (MQ=255)

                                                               ttCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACtttt                          >  1:3255205/1‑93 (MQ=255)

                                                               ttCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACtttt                          >  2:2502260/1‑93 (MQ=255)

                                                                tCAGCCCGAGCATCTCTTGGTCAGGCTCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTg                         <  2:3320671/93‑1 (MQ=255)

                                                                tCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGTCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTg                         >  1:672571/1‑93 (MQ=255)

                                                                tCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTtgtg                         >  1:4653921/1‑93 (MQ=255)

                                                                tCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTg                         >  2:1758074/1‑93 (MQ=255)

                                                                tCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTg                         <  2:4275199/93‑1 (MQ=255)

                                                                 cAGCCCGAGCCTCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGa                        <  1:1086051/93‑1 (MQ=255)

                                                                  aGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAg                       >  2:1164695/1‑93 (MQ=255)

                                                                   gCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGt                      >  2:2300031/1‑93 (MQ=255)

                                                                    cccGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTc                     <  2:3135989/93‑1 (MQ=255)

                                                                     ccGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTcc                    >  1:1737793/1‑93 (MQ=255)

                                                                     ccGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTcc                    >  1:2999379/1‑93 (MQ=255)

                                                                     ccGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTcc                    >  1:2882067/1‑93 (MQ=255)

                                                                     ccGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTcc                    <  2:1243694/93‑1 (MQ=255)

                                                                     ccGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTcc                    <  1:2665739/93‑1 (MQ=255)

                                                                      cGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCa                   >  1:1178796/1‑93 (MQ=255)

                                                                      cGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCa                   >  2:730817/1‑93 (MQ=255)

                                                                        aGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCAcc                 <  2:834710/93‑1 (MQ=255)

                                                                        aGCATCTCTTGGTCAGGCGCATCCGTAATCACCTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCAcc                 <  2:2587382/93‑1 (MQ=255)

                                                                         gCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCg                >  1:980670/1‑93 (MQ=255)

                                                                           aTCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGtc              >  2:944583/1‑93 (MQ=255)

                                                                           aTCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGtc              >  2:1118121/1‑93 (MQ=255)

                                                                           aTCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTAAGCACTTTTGAGTCCACCgct              >  2:1118120/1‑91 (MQ=255)

                                                                           aTCTCTTGGTCAGGCGCATAGGTAATCAAATAGCTGACGGAATGCCAGACAATATCTTCACGAGCCAGATTCAGCACTTTTGAGTCCActggc              >  2:944584/1‑89 (MQ=255)

                                                                            tctcTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGtct             >  1:1065185/1‑93 (MQ=255)

                                                                            tctcTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGtct             >  1:3454903/1‑93 (MQ=255)

                                                                             ctctTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCTGCGCCAGATTCAGCACTTTTGAGTCCACCGtctc            <  2:2827447/93‑1 (MQ=255)

                                                                             ctctTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGtctc            <  2:4150326/93‑1 (MQ=255)

                                                                              tctTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTctct           <  1:922876/93‑1 (MQ=255)

                                                                              tctTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTctct           <  1:2697912/93‑1 (MQ=255)

                                                                              tctTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTctct           >  1:1041822/1‑93 (MQ=255)

                                                                                 tGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTAcc        >  2:2418627/1‑93 (MQ=255)

                                                                                  ggTCAGGCCCATCTGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCg       <  1:4257891/93‑1 (MQ=255)

                                                                                      aGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAg   <  1:1659822/93‑1 (MQ=255)

                                                                                       ggCNCNTCNGTAATCAACTCGCTGNCGGANTGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAgc  <  2:2883318/93‑1 (MQ=255)

                                                                                       ggCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAgc  <  2:2959582/93‑1 (MQ=255)

GCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGC  >  NC_000913/1765601‑1765780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`