BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,317,837	T→C	A4A (GCA→GCG)	rcsC ←	RcsC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,317,837	0	T	C	98.0%	784.5 / 2.3	248	A4A (GCA→GCG)	rcsC	RcsC
Reads supporting (aligned to +/- strand): ref base T (2/3); new base C (108/135); total (110/138)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.53e-01

Only 100 of 255 total aligned reads displayed.

CTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGAT  >  NC_000913/2317747‑2317926

 tGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGct                                                                                        <  2:2050593/93‑1 (MQ=255)

 tGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGct                                                                                        <  2:1618064/93‑1 (MQ=255)

   aCGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGctct                                                                                      <  1:671134/93‑1 (MQ=255)

    cGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTg                                                                                     <  2:3563260/93‑1 (MQ=255)

     gAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTGAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGa                                                                                    >  1:436170/1‑93 (MQ=255)

     gAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGa                                                                                    <  1:3329948/93‑1 (MQ=255)

      aaTTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGaa                                                                                   >  2:1742100/1‑93 (MQ=255)

         ttCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACAt                                                                                >  1:2108136/1‑93 (MQ=255)

          tCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATg                                                                               <  2:3163755/93‑1 (MQ=255)

            cGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTa                                                                             >  2:2283587/1‑93 (MQ=255)

              aTTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAgc                                                                           >  1:2783856/1‑93 (MQ=255)

              aTTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAgc                                                                           >  1:2647787/1‑93 (MQ=255)

                tctcGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAgcgc                                                                         >  1:271147/1‑93 (MQ=255)

                  tcGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGa                                                                       <  2:4069699/93‑1 (MQ=255)

                  tcGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGa                                                                       >  1:3795650/1‑93 (MQ=255)

                  tcGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGa                                                                       <  1:2428441/93‑1 (MQ=255)

                   cGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAg                                                                      <  2:4107781/93‑1 (MQ=255)

                    gCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAgg                                                                     >  1:126250/1‑93 (MQ=255)

                     ttGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACTCCAACGCTCTGATCATGTAGCGCGAGGc                                                                    >  1:4221711/2‑93 (MQ=255)

                      tGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCt                                                                   >  1:1963226/1‑93 (MQ=255)

                      tGATGTAACGCATCAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCt                                                                   >  2:2891500/1‑93 (MQ=255)

                       gATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCtt                                                                  <  1:2026635/93‑1 (MQ=255)

                         tGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTc                                                                <  1:2406932/93‑1 (MQ=255)

                         tGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTc                                                                <  1:530556/93‑1 (MQ=255)

                         tGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTc                                                                <  2:4608061/93‑1 (MQ=255)

                          gTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCa                                                               <  1:2594243/93‑1 (MQ=255)

                           tAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAg                                                              <  1:3514526/93‑1 (MQ=255)

                           tAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAg                                                              <  1:2355579/93‑1 (MQ=255)

                             aCGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAggg                                                            >  1:3112351/1‑93 (MQ=255)

                             aCGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAggg                                                            >  2:808513/1‑93 (MQ=255)

                              cGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGt                                                           <  2:2646882/93‑1 (MQ=255)

                               gCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGtt                                                          >  1:3569486/1‑93 (MQ=255)

                                cATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTg                                                         <  2:110476/93‑1 (MQ=255)

                                cATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTg                                                         >  1:4133213/1‑93 (MQ=255)

                                 aTTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGt                                                        >  1:4052697/1‑93 (MQ=255)

                                  ttAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTa                                                       <  2:3827485/93‑1 (MQ=255)

                                  ttAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTa                                                       >  1:2994789/1‑93 (MQ=255)

                                   tAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTAc                                                      <  2:910531/93‑1 (MQ=255)

                                      cGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGaa                                                   >  1:1215787/1‑93 (MQ=255)

                                        aTGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGaaaa                                                 <  2:192758/93‑1 (MQ=255)

                                        aTGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGaaaa                                                 <  2:4245559/93‑1 (MQ=255)

                                         tGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAaag                                                <  1:4723703/93‑1 (MQ=255)

                                         tGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAaag                                                >  2:775175/1‑93 (MQ=255)

                                         tGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAaag                                                >  2:2251806/1‑93 (MQ=255)

                                          gTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAaaga                                               >  2:513662/1‑93 (MQ=255)

                                           tAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAaagaa                                              <  1:654592/93‑1 (MQ=255)

                                            aaaaaaCGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAaagaag                                             <  2:4301623/93‑1 (MQ=255)

                                            aaaaaaCGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAaagaag                                             <  1:1788844/93‑1 (MQ=255)

                                            aaaaaaCGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAaagaag                                             >  1:1122580/1‑93 (MQ=255)

                                              aaaaCGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCa                                           >  2:4089439/1‑93 (MQ=255)

                                               aaaCGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCaa                                          >  1:3236837/1‑93 (MQ=255)

                                               aaaCGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCaa                                          <  1:1004624/93‑1 (MQ=255)

                                               aaaCGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCaa                                          >  2:2867427/1‑93 (MQ=255)

                                               aaaCGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCaa                                          >  2:3873051/1‑93 (MQ=255)

                                                aaCGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAg                                         <  2:2731261/93‑1 (MQ=255)

                                                 aCGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAgg                                        <  2:4001641/93‑1 (MQ=255)

                                                 aCGGATGAAAAAGCAATCAACAGCCAGAGCACCAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAgg                                        <  2:3714192/93‑1 (MQ=255)

                                                   ggATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTa                                      <  2:2387323/93‑1 (MQ=255)

                                                   ggATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTa                                      <  2:1897448/93‑1 (MQ=255)

                                                   ggATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTa                                      >  2:554738/1‑93 (MQ=255)

                                                     aTGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTAtt                                    <  2:2851697/93‑1 (MQ=255)

                                                      tGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTAttt                                   >  1:2964755/1‑93 (MQ=255)

                                                       gAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTc                                  <  2:3580915/93‑1 (MQ=255)

                                                        aaaaaGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCa                                 >  2:2958196/1‑93 (MQ=255)

                                                         aaaaGCAATCAACAGCCAGAGCACTAAAGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGAATTTCaa                                >  2:1493631/1‑93 (MQ=255)

                                                          aaaGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCaaa                               <  2:2165932/93‑1 (MQ=255)

                                                          aaaGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCaaa                               <  2:2188638/93‑1 (MQ=255)

                                                           aaGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGTCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAg                              <  2:145584/93‑1 (MQ=255)

                                                           aaGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAg                              <  1:2214313/93‑1 (MQ=255)

                                                           aaGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAg                              <  1:17715/93‑1 (MQ=255)

                                                            aGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAgg                             >  1:2139904/1‑93 (MQ=255)

                                                            aGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAgg                             <  2:1791068/93‑1 (MQ=255)

                                                            aGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAgg                             <  2:3105339/93‑1 (MQ=255)

                                                             gCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAggg                            >  1:888815/1‑93 (MQ=255)

                                                             acAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAggg                            <  2:4421589/92‑1 (MQ=255)

                                                              cAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAgggg                           <  2:70765/93‑1 (MQ=255)

                                                               aaTCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGTTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGc                          <  2:2974975/93‑1 (MQ=255)

                                                               aaTCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGc                          <  2:2530888/93‑1 (MQ=255)

                                                               aaTCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGc                          >  1:4590777/1‑93 (MQ=255)

                                                                aTCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCg                         >  1:4467484/1‑93 (MQ=255)

                                                                     cAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCt                    >  1:1067223/1‑93 (MQ=255)

                                                                      aGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTc                   >  2:1695060/1‑93 (MQ=255)

                                                                       gCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGTGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTcc                  >  2:1597198/1‑93 (MQ=255)

                                                                       gCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTcc                  >  2:1452540/1‑93 (MQ=255)

                                                                        ccAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCg                 >  2:1676638/1‑93 (MQ=255)

                                                                         cAGAGCACTAACGACAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGTTTGCACGAAAAGAAGCAAGGTGTTTCAAAGGGGCGGAGCTCGGc                >  1:3308814/1‑93 (MQ=255)

                                                                           gagCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCt              >  2:4408249/1‑93 (MQ=255)

                                                                              cACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAg           >  2:2731136/1‑93 (MQ=255)

                                                                               aCTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAgg          <  2:3742902/93‑1 (MQ=255)

                                                                               aCTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAgg          >  1:1647639/1‑93 (MQ=255)

                                                                               aCTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAgg          >  1:2549389/1‑93 (MQ=255)

                                                                                cTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGt         >  2:12370/1‑93 (MQ=255)

                                                                                  aaCGCCAACGCTCTGAACATGTAGCGCAAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGa       <  1:1930359/93‑1 (MQ=255)

                                                                                   aCGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGAc      <  2:3344952/93‑1 (MQ=255)

                                                                                    cGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGAcc     <  1:1337389/93‑1 (MQ=255)

                                                                                     gCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCg    <  1:91851/93‑1 (MQ=255)

                                                                                     gCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCg    <  2:3675107/93‑1 (MQ=255)

                                                                                     gCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCg    <  1:1430783/93‑1 (MQ=255)

                                                                                       cAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGAt  <  1:567287/93‑1 (MQ=255)

                                                                                       cAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGAt  <  2:2597566/93‑1 (MQ=255)

CTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGAT  >  NC_000913/2317747‑2317926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`