Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,505,495 C→T Q140Q (CAG→CAA b2386 ← putative transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,505,4950CT98.6% 240.7 / NA 72Q140Q (CAG→CAAb2386putative transport protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base T (57/14);  minor base G (1/0);  total (58/14)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

AATAATCAGCGCACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGCTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCGCCACAAAAGCAGCAAACATCGGA  >  NC_000913/2505405‑2505582
                                                                                           |                                                                                       
aataatCAGCGCACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTg                                                                                       <  1:1470919/93‑1 (MQ=255)
aataatCAGCGCACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTg                                                                                       <  2:4742950/93‑1 (MQ=255)
 ataatCAGCGCACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTgg                                                                                      <  1:2137051/93‑1 (MQ=255)
 ataatCAGCGCACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTgg                                                                                      >  2:714050/1‑93 (MQ=255)
  aaatCAGCGCACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTggg                                                                                     <  2:3553524/92‑1 (MQ=255)
   aatCAGCGCACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGt                                                                                    >  1:3064852/1‑93 (MQ=255)
   aatCAGCGCACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGt                                                                                    <  2:339748/93‑1 (MQ=255)
   aatCAGCGCACCAATGAAGGCGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTCGGCTCGAAGTTCAGCAGTTGCGTCGGTTGGGt                                                                                    >  2:2513122/1‑93 (MQ=255)
   aatCAGCGCACCAATAAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTggga                                                                                    >  2:2513123/1‑92 (MQ=255)
   aagcAGCGCACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGt                                                                                    <  1:3655159/90‑1 (MQ=255)
    atCAGCGCACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTa                                                                                   >  2:1734158/1‑93 (MQ=255)
    atCAGCGCACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTa                                                                                   <  1:234782/93‑1 (MQ=255)
     tCAGCGCACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAg                                                                                  >  1:1350369/1‑93 (MQ=255)
     tCAGCGCACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAg                                                                                  >  2:1678950/1‑93 (MQ=255)
      cAGCGCACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGa                                                                                 >  1:1172243/1‑93 (MQ=255)
       cgcgcATCAATGAAGGTTGACGGCAACGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGGAGTTGCGTCGGTTGGGTAGAc                                                                                <  1:843556/92‑1 (MQ=255)
       aGCGCACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGAc                                                                                <  1:843557/93‑1 (MQ=255)
       aGCGCACCAATGAAGGTGGAAGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTCGGGTAGaa                                                                                >  2:986962/1‑92 (MQ=255)
         cgcACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACAt                                                                              <  2:3564885/93‑1 (MQ=255)
          gcACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGCTCTGGGATCGAAGTTCTGCAGTTGCGTCGGTTGGTTAGACATc                                                                             >  1:4210473/1‑93 (MQ=255)
           cACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCa                                                                            <  2:1871107/93‑1 (MQ=255)
           cACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCa                                                                            >  1:1001593/1‑93 (MQ=255)
           cACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCa                                                                            >  2:463405/1‑93 (MQ=255)
           cACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCa                                                                            >  2:601601/1‑93 (MQ=255)
            aCCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCaa                                                                           <  1:415098/93‑1 (MQ=255)
            aCCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCaa                                                                           <  1:415248/93‑1 (MQ=255)
              cAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAAcc                                                                         >  1:2232914/1‑93 (MQ=255)
               aaTGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAAccc                                                                        >  1:3464747/1‑93 (MQ=255)
                 tGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACccgc                                                                      >  1:2925494/1‑93 (MQ=255)
                 tGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACccgc                                                                      >  2:4731846/1‑93 (MQ=255)
                  gAAGGTGGACGGCACTGGCGAAGAGGACGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGGTGGGTAGACATCAACccgcc                                                                     >  2:548412/1‑93 (MQ=255)
                  gAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACccgcc                                                                     >  2:3790153/1‑93 (MQ=255)
                  gAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACccgcc                                                                     >  1:1745725/1‑93 (MQ=255)
                  gAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACccgcc                                                                     >  2:548411/1‑93 (MQ=255)
                   aaGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACccgccg                                                                    >  2:283205/1‑93 (MQ=255)
                        ggACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATaaa                                                               >  2:3561623/1‑93 (MQ=255)
                        ggACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATaaa                                                               >  2:2624056/1‑93 (MQ=255)
                          aCGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAAc                                                             >  1:2982778/1‑93 (MQ=255)
                           cGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGGAGACATCAACACGCCGATAAAAcc                                                            >  2:1812374/1‑93 (MQ=255)
                             gCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAg                                                          >  2:3840762/1‑93 (MQ=255)
                               aCCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGcc                                                        >  1:4396621/1‑93 (MQ=255)
                                ccGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCg                                                       >  2:1781950/1‑93 (MQ=255)
                                  ggCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCggg                                                     >  1:1537144/1‑93 (MQ=255)
                                  ggCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCggg                                                     >  2:3914300/1‑93 (MQ=255)
                                   gggAAGAGGTCCCCATTGGCATGGTGGGGGGATAGAGGTACAGGAGTGGGGGGGTTGGGGAAGACACCACCCCGCCGATAAAACCAGCCGGGa                                                    <  2:139927/91‑1 (MQ=255)
                                   gCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGAAGACATCAACCCGCCGATAAAACCAGCCGGGa                                                    >  1:2158033/1‑93 (MQ=255)
                                     gAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGATGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGCAc                                                  >  1:4571423/1‑93 (MQ=255)
                                      aaGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAAcc                                                 >  1:2520145/1‑92 (MQ=255)
                                      aaGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACg                                                 >  2:3959779/1‑93 (MQ=255)
                                       agagGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGc                                                >  2:3003353/1‑93 (MQ=255)
                                          ggTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAg                                             >  1:902628/1‑93 (MQ=255)
                                           gTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATACAACCAGCCGGGAACGCCAGt                                            >  2:1768841/1‑93 (MQ=255)
                                           gTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGt                                            >  2:681930/1‑93 (MQ=255)
                                           gTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGGTGGGTAGACATCAACCCGCCGATAAAACAAGCCGGGAACGCCAGt                                            >  2:1883931/1‑93 (MQ=255)
                                            tcccccATTGCATAGTGCTGGGATCGAATTTCAGCAGTTGCGTCGGTTGGGTAGACATCACCCCGCCGATAAAACCAGCCGGGAACGCCAGtt                                           <  2:526706/90‑1 (MQ=255)
                                              gCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTg                                         >  2:1357246/1‑93 (MQ=255)
                                               cccATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGc                                        >  2:4690990/1‑93 (MQ=255)
                                               cccATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGc                                        >  1:648522/1‑93 (MQ=255)
                                                cctttGCATAGGGCGGGGATCAAATTCCAGCGTTTGGGTGGGTGGGGAACCCCCCACCCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGcc                                       <  2:3436217/90‑1 (MQ=255)
                                                ccATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGcc                                       >  2:171888/1‑93 (MQ=255)
                                                 cATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCa                                      >  2:2162249/1‑93 (MQ=255)
                                                 cATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCa                                      >  1:4096568/1‑93 (MQ=255)
                                                 cATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCa                                      >  2:2858109/1‑93 (MQ=255)
                                                  aTTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCAc                                     >  1:1371661/1‑93 (MQ=255)
                                                  aTTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCAc                                     >  2:3374191/1‑93 (MQ=255)
                                                      gCATAGTGCTGGAATCGAAGTACAGGAGTTGCGTCGGTGGGGTAGACCACACCCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGa                                  <  1:1495052/93‑1 (MQ=255)
                                                      gCATAGTGCGGGGATCGAAGTTCAGCAGTGGCGTGGGTTGGGAAGACACCACCCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGa                                  <  1:2427090/93‑1 (MQ=255)
                                                          aGTGGTGGAATCGAAGTTCAGCAGTTGCGTGGTTGGGGAAGACATCACCCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATaga                              <  1:853359/93‑1 (MQ=255)
                                                           gTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATagag                             >  2:4057184/1‑93 (MQ=255)
                                                             gcggggATCGATGTTCAGCTGGTGCGTGTGTTGGGTAGACAACACCCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGtt                           <  1:2202986/90‑1 (MQ=255)
                                                              gggggATAAAAGTGCAGCAGTGGCGTCGGTTGGGAAGACATCACCCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTc                          <  1:2571306/91‑1 (MQ=255)
                                                              cTGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTc                          >  2:2936281/1‑93 (MQ=255)
                                                               tGGGATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCg                         >  1:2690645/1‑93 (MQ=255)
                                                                gggATCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCGc                        >  2:3269846/1‑93 (MQ=255)
                                                                    tCGAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCGCcaca                    >  2:2741543/1‑93 (MQ=255)
                                                                      gAAGTTCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCGCCACaaa                  >  2:2211553/1‑93 (MQ=255)
                                                                      gAAGTGCAGCAGTGGCGTCGGTTGGGAAGACACCACCCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCGCCACaaa                  <  2:743225/93‑1 (MQ=255)
                                                                      aatgTTCAGCGGTTGCGTGGTTGGGGAAGCCACCACCCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCGCCACaaa                  <  1:2435297/90‑1 (MQ=255)
                                                                        aGTTCAGCAGTTGCGGGGGTGGGAAACACACCACCCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCGCCACAAAag                <  2:1186340/93‑1 (MQ=255)
                                                                          ttCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGACGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCGCCACAAAagca              <  1:4719020/93‑1 (MQ=255)
                                                                           tCAGCAGTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCGCCACAAAagcag             >  1:2649714/1‑93 (MQ=255)
                                                                           tCAGAAGTTGCGTGGTTGGGGAAGACATCACCCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCGCCACAAAagcag             <  1:3757793/93‑1 (MQ=255)
                                                                             agcagTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCGCCACAAAAgcagca           >  1:2301338/1‑93 (MQ=255)
                                                                             agcagTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCGCCACAAAAgcagca           >  1:2775673/1‑93 (MQ=255)
                                                                             agcagTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCGCCACAAAAgcagca           >  2:1990692/1‑93 (MQ=255)
                                                                              gcagTTGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCGCCACAAAAGCAGCaa          >  2:618618/1‑93 (MQ=255)
                                                                                tgTTGCGGCGGTGGGGCAGCCATCCCCCCGCCGATAAACCCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCGCCACAAAAGCAGCAAAc        <  2:2710290/92‑1 (MQ=255)
                                                                                  ttGCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCGCCACAAAAGCAGCAAACAt      >  1:789567/1‑93 (MQ=255)
                                                                                    gCGTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCGCCACAAAAGCAGCAAACATCg    >  2:1604461/1‑93 (MQ=255)
                                                                                      gTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCGCCACAAAAGCAGCAAACATCGGa  >  1:1481592/1‑93 (MQ=255)
                                                                                      gTCGGTTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCGCCACAAAAGCAGCAAACATCGGa  >  1:1799431/1‑93 (MQ=255)
                                                                                           |                                                                                       
AATAATCAGCGCACCAATGAAGGTGGACGGCACCGGCGAAGAGGTCGCCCATTGCATAGTGCTGGGATCGAAGTTCAGCAGTTGCGTCGGCTGGGTAGACATCAACCCGCCGATAAAACCAGCCGGGAACGCCAGTTTGCCACCGATAGAGTTCGCCACAAAAGCAGCAAACATCGGA  >  NC_000913/2505405‑2505582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: