Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,778,911 T→C T656A (ACT→GCT)  ypjA ← putative ATP‑binding component of a transport system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,778,9110TC99.5% 602.8 / NA 184T656A (ACT→GCT) ypjAputative ATP‑binding component of a transport system
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (82/101);  minor base A (1/0);  total (83/101)
Fisher's exact test for biased strand distribution p-value = 4.51e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 196 total aligned reads displayed.

CATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGAGC  >  NC_000913/2778821‑2779000
                                                                                          |                                                                                         
   ataCCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCaa                                                                                      >  2:1624322/1‑93 (MQ=255)
    taCCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAAc                                                                                     >  1:3014725/1‑93 (MQ=255)
    taCCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAAc                                                                                     >  2:29252/1‑93 (MQ=255)
    taCCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAAc                                                                                     >  2:4743369/1‑93 (MQ=255)
     aCCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACa                                                                                    <  1:4413099/93‑1 (MQ=255)
     aCCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACa                                                                                    >  2:1208501/1‑93 (MQ=255)
      ccGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACAt                                                                                   <  2:3261664/93‑1 (MQ=255)
      ccGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACAt                                                                                   <  2:2736832/93‑1 (MQ=255)
       cGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATc                                                                                  <  1:2841495/93‑1 (MQ=255)
        gTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCt                                                                                 >  1:959146/1‑93 (MQ=255)
         tttGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCtt                                                                                >  2:434567/1‑93 (MQ=255)
         tttGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCtt                                                                                >  1:2042966/1‑93 (MQ=255)
           tgcttgcCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCtttt                                                                              <  2:1933754/93‑1 (MQ=255)
           tgcttgcCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCtttt                                                                              <  2:4532052/93‑1 (MQ=255)
           tgcttgcCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGAGCCAACATCtttt                                                                              >  1:2261774/1‑93 (MQ=255)
            gcttgcCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTc                                                                             <  1:4248364/93‑1 (MQ=255)
             cttgcCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTcc                                                                            <  2:2288754/93‑1 (MQ=255)
              ttgcCACCTTTGATATTTGCTTTATCAGAAGTGGCGCTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCa                                                                           >  1:2579978/1‑93 (MQ=255)
              ttgcCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCa                                                                           <  1:2818072/93‑1 (MQ=255)
              ttgcCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCa                                                                           <  2:1042778/93‑1 (MQ=255)
               tgcCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCAt                                                                          >  1:3186009/1‑93 (MQ=255)
               tgcCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCAt                                                                          <  1:2530428/93‑1 (MQ=255)
                  cACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATaaa                                                                       >  2:625392/1‑93 (MQ=255)
                  cACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATaaa                                                                       >  2:1841627/1‑93 (MQ=255)
                  cACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATaaa                                                                       >  2:4188820/1‑93 (MQ=255)
                   aCCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAAc                                                                      <  2:1952876/93‑1 (MQ=255)
                    ccTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACa                                                                     <  1:1858524/93‑1 (MQ=255)
                    ccTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACa                                                                     >  1:3560189/1‑93 (MQ=255)
                      tttGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATc                                                                   >  2:3533950/1‑93 (MQ=255)
                       ttGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATcc                                                                  <  2:4443237/93‑1 (MQ=255)
                        tGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCa                                                                 <  2:4557979/93‑1 (MQ=255)
                         gATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCAt                                                                <  1:4558276/93‑1 (MQ=255)
                          atatTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCAtt                                                               <  2:298499/93‑1 (MQ=255)
                          atatTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCAtt                                                               <  2:3739383/93‑1 (MQ=255)
                          atatTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCAtt                                                               >  1:246734/1‑93 (MQ=255)
                          atatTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCAtt                                                               >  1:2701581/1‑93 (MQ=255)
                          atatTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATCGAGTACAGCGCCAACATCTTTTCCATAAACATCCAtt                                                               <  2:1129460/93‑1 (MQ=255)
                           tatTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCAttt                                                              <  2:2055459/93‑1 (MQ=255)
                           tatTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCAttt                                                              >  2:2086687/1‑93 (MQ=255)
                           tatTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCAttt                                                              >  2:2672446/1‑93 (MQ=255)
                            atTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCAtttt                                                             <  1:1419812/93‑1 (MQ=255)
                             tttGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTg                                                            >  2:3422346/1‑93 (MQ=255)
                             tttGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTg                                                            >  1:4436889/1‑93 (MQ=255)
                             tttGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTg                                                            <  1:371804/93‑1 (MQ=255)
                             tttGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTg                                                            >  1:403432/1‑93 (MQ=255)
                               tGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGcg                                                          >  1:4212026/1‑92 (MQ=255)
                                gCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCg                                                         <  1:732840/93‑1 (MQ=255)
                                 cTTTATCAGAAATCGGGCTAGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCGTTTCCATAAACATCCATTTTGCCGt                                                        <  2:3922359/93‑1 (MQ=255)
                                  tttATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGtt                                                       <  2:3013026/93‑1 (MQ=255)
                                    tATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCACCATCTTTTCCATAAACATCCATTTTGCCGTTgg                                                     >  1:4373088/1‑93 (MQ=255)
                                    tATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTgg                                                     <  2:346254/93‑1 (MQ=255)
                                    tATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTgg                                                     <  1:2254608/93‑1 (MQ=255)
                                    tATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTgg                                                     <  2:346255/93‑1 (MQ=255)
                                     aTCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGc                                                    >  1:3391993/1‑93 (MQ=255)
                                      tCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCa                                                   <  2:3818240/93‑1 (MQ=255)
                                        aGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCAtt                                                 >  2:697971/1‑93 (MQ=255)
                                         gAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATta                                                >  2:1688948/1‑93 (MQ=255)
                                         gAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATta                                                <  1:3724863/93‑1 (MQ=255)
                                         gAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATta                                                >  2:339759/1‑93 (MQ=255)
                                         gAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATta                                                >  1:1040135/1‑93 (MQ=255)
                                          aaGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATtaa                                               <  2:3583688/93‑1 (MQ=255)
                                          aaGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATtaa                                               <  2:3896724/93‑1 (MQ=255)
                                          aaGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATtaa                                               <  1:4567717/93‑1 (MQ=255)
                                            gTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATtaata                                             >  2:1720991/1‑93 (MQ=255)
                                            gTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATtaata                                             <  2:2001776/93‑1 (MQ=255)
                                              ggCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTaataat                                           <  1:3861339/93‑1 (MQ=255)
                                              ggCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTaataat                                           >  2:4125679/1‑93 (MQ=255)
                                                cACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCg                                         <  2:4695948/93‑1 (MQ=255)
                                                cACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCg                                         <  1:228364/93‑1 (MQ=255)
                                                cACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCg                                         <  1:933365/93‑1 (MQ=255)
                                                 aCTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCgt                                        >  1:416140/1‑93 (MQ=255)
                                                 aCTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCgt                                        <  2:361282/93‑1 (MQ=255)
                                                    ggCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTc                                     >  1:793761/1‑93 (MQ=255)
                                                      cATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCaa                                   <  1:3450641/93‑1 (MQ=255)
                                                       atatatTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAAc                                  <  2:86844/93‑1 (MQ=255)
                                                       atatatTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAAc                                  >  2:2372815/1‑93 (MQ=255)
                                                       atatatTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAAc                                  <  1:2182458/93‑1 (MQ=255)
                                                          tatTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTgc                               >  2:2769739/1‑93 (MQ=255)
                                                          tatTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTgc                               >  1:1083364/1‑93 (MQ=255)
                                                          tatTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTgc                               >  2:4517821/1‑93 (MQ=255)
                                                          tatTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTgc                               <  2:1886330/93‑1 (MQ=255)
                                                                  gggTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAAc                       <  2:818255/93‑1 (MQ=255)
                                                                     tGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAg                    <  2:4628852/93‑1 (MQ=255)
                                                                      gCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCGTTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGt                   >  1:3490829/1‑93 (MQ=255)
                                                                      gCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGt                   <  1:4661762/93‑1 (MQ=255)
                                                                      gCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGt                   <  1:2689668/93‑1 (MQ=255)
                                                                       ccAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTg                  <  1:607919/93‑1 (MQ=255)
                                                                       ccAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTg                  >  1:2325609/1‑93 (MQ=255)
                                                                          gCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTgacg               >  1:263597/1‑93 (MQ=255)
                                                                           cACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTgacga              <  2:402425/93‑1 (MQ=255)
                                                                            aCTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTgacgac             <  2:3297838/93‑1 (MQ=255)
                                                                            aCTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTgacgac             >  1:54128/1‑93 (MQ=255)
                                                                              tATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTg           >  1:4256686/1‑93 (MQ=255)
                                                                                 tGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTa        <  2:4588902/93‑1 (MQ=255)
                                                                                  gAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTaa       <  2:1384853/93‑1 (MQ=255)
                                                                                   aGTACAGCGGCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAAt      <  1:2720372/93‑1 (MQ=255)
                                                                                   aGTACAGCGCCAACATTTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAAt      <  1:1669615/93‑1 (MQ=255)
                                                                                     tACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGa    >  2:1016287/1‑93 (MQ=255)
                                                                                      aCAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGAg   >  1:3426452/1‑93 (MQ=255)
                                                                                       cAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGAGc  <  1:3312212/93‑1 (MQ=255)
                                                                                          |                                                                                         
CATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGAGC  >  NC_000913/2778821‑2779000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: