Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,186,266 T→C V284A (GTC→GCC)  yqiG → putative membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,186,2660TC98.4% 799.3 / 0.9 250V284A (GTC→GCC) yqiGputative membrane protein
Reads supporting (aligned to +/- strand):  ref base T (3/1);  new base C (119/127);  total (122/128)
Fisher's exact test for biased strand distribution p-value = 3.60e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.90e-01

Only 100 of 261 total aligned reads displayed.

TGAAAAGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAAC  >  NC_000913/3186176‑3186355
                                                                                          |                                                                                         
tGAAAAGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGcct                                                                                         <  1:780642/93‑1 (MQ=255)
  aaaaGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTca                                                                                       <  2:1351349/93‑1 (MQ=255)
  aaaaGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTca                                                                                       >  1:1170705/1‑93 (MQ=255)
   aaaGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTcac                                                                                      >  1:1375621/1‑93 (MQ=255)
    aaGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAACTCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTcaca                                                                                     <  2:400319/93‑1 (MQ=255)
    aaGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTcaca                                                                                     >  1:3319140/1‑93 (MQ=255)
       cGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGaa                                                                                  <  2:3518991/93‑1 (MQ=255)
        gATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGaac                                                                                 <  1:368653/93‑1 (MQ=255)
        gATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGaac                                                                                 >  1:2705679/1‑93 (MQ=255)
         aTGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGaaca                                                                                >  2:4128482/1‑93 (MQ=255)
         aTGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGaaca                                                                                <  2:2071393/93‑1 (MQ=255)
          tGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGaacaa                                                                               >  1:2166371/1‑93 (MQ=255)
           gagaATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGaacaac                                                                              <  2:2427083/93‑1 (MQ=255)
            agaATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAAcc                                                                             <  2:1533559/93‑1 (MQ=255)
             gaATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCg                                                                            <  2:4210309/93‑1 (MQ=255)
              aaTATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGt                                                                           >  2:40507/1‑93 (MQ=255)
              aaTATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGt                                                                           <  2:747686/93‑1 (MQ=255)
                tatGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGtat                                                                         >  2:1082270/1‑93 (MQ=255)
                tatGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGtat                                                                         >  1:2545504/1‑93 (MQ=255)
                 atGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGtatt                                                                        >  1:4693642/1‑93 (MQ=255)
                 atGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGtatt                                                                        <  2:3552550/93‑1 (MQ=255)
                  tGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGtatta                                                                       <  2:2970177/93‑1 (MQ=255)
                  tGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGtatta                                                                       >  2:3961758/1‑93 (MQ=255)
                  tGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGtatta                                                                       <  1:533898/93‑1 (MQ=255)
                     tACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTAttattt                                                                    >  2:2785977/1‑93 (MQ=255)
                       ccGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTAttatttat                                                                  >  2:2247382/1‑93 (MQ=255)
                         gCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCa                                                                <  2:4059075/93‑1 (MQ=255)
                          ccAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCaa                                                               <  1:2623887/93‑1 (MQ=255)
                           cAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAGAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAg                                                              <  1:810509/93‑1 (MQ=255)
                            aGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCATAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGa                                                             >  1:376815/1‑93 (MQ=255)
                            aGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGa                                                             >  1:2148615/1‑93 (MQ=255)
                            aGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGa                                                             >  2:1277794/1‑93 (MQ=255)
                             gACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGaa                                                            >  2:3396635/1‑93 (MQ=255)
                             gACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGaa                                                            >  1:1608944/1‑93 (MQ=255)
                                cTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAAt                                                         >  1:251768/1‑93 (MQ=255)
                                 tACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATg                                                        <  1:1125845/93‑1 (MQ=255)
                                 tACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATg                                                        <  2:784290/93‑1 (MQ=255)
                                     tGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTtcc                                                    <  2:2409065/93‑1 (MQ=255)
                                     tGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTtcc                                                    <  2:1794444/93‑1 (MQ=255)
                                     tGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTtcc                                                    >  1:954882/1‑93 (MQ=255)
                                     tGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTtcc                                                    >  1:742703/1‑93 (MQ=255)
                                      ggTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTtcct                                                   <  1:3665072/93‑1 (MQ=255)
                                       gTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCATAGAACAACCGTATTATTTATCAAGAAAGTGTacctc                                                  >  1:1962684/1‑93 (MQ=255)
                                        ttACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTtcctcc                                                 <  2:100651/93‑1 (MQ=255)
                                         tACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCa                                                <  1:1845865/93‑1 (MQ=255)
                                          aCGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAg                                               >  1:1236998/1‑93 (MQ=255)
                                           cGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAgg                                              >  1:557078/1‑93 (MQ=255)
                                            gCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGc                                             <  2:453340/93‑1 (MQ=255)
                                            gCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGc                                             >  2:3883659/1‑93 (MQ=255)
                                            gCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAAACGTATTATTTATCAAGAAAATGTTCCTCCAGGc                                             >  2:4653241/1‑93 (MQ=255)
                                             cACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGcc                                            <  1:4116471/93‑1 (MQ=255)
                                              aCCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGccc                                           >  1:3443639/1‑93 (MQ=255)
                                              aCCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGccc                                           >  1:225269/1‑93 (MQ=255)
                                               ccGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCa                                          >  2:2599916/1‑93 (MQ=255)
                                                cGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCAt                                         <  1:1389827/93‑1 (MQ=255)
                                                 gCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCAtt                                        <  2:3822808/93‑1 (MQ=255)
                                                 gCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTACAGGCCCAtt                                        <  2:3056372/93‑1 (MQ=255)
                                                     aTCACGGGGGTCGCACAAAAGAATGCAAAGGTCACTGCCTCACAAACCAAGCGTATTATTTATCCAGAAAATGTTCCTCCAAGCCCATATGCt                                    >  2:3228715/1‑93 (MQ=255)
                                                       cACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTAt                                  <  2:2628172/93‑1 (MQ=255)
                                                        aCGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTAtt                                 >  2:1607568/1‑93 (MQ=255)
                                                          gggTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTAc                               <  2:3633062/93‑1 (MQ=255)
                                                           ggTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTAcc                              >  1:2901215/1‑93 (MQ=255)
                                                              gtCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAAt                           >  1:4744613/1‑93 (MQ=255)
                                                              gtCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAAt                           <  1:3588013/93‑1 (MQ=255)
                                                                 gCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTTCTATTACCAATTTa                        <  2:4511734/93‑1 (MQ=255)
                                                                 gCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTa                        <  1:864433/93‑1 (MQ=255)
                                                                  cacaAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTAt                       <  2:930029/93‑1 (MQ=255)
                                                                  cacaAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTAt                       <  1:3942247/93‑1 (MQ=255)
                                                                   acaAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTAtt                      >  2:222753/1‑93 (MQ=255)
                                                                   acaAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTAtt                      <  1:2960397/93‑1 (MQ=255)
                                                                   acaAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTAtt                      >  2:639706/1‑93 (MQ=255)
                                                                   acaAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTAtt                      >  1:1022856/1‑93 (MQ=255)
                                                                      aaCGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCaa                   >  2:4303951/1‑93 (MQ=255)
                                                                      aaCGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCaa                   >  1:445751/1‑93 (MQ=255)
                                                                      aaCGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCaa                   >  1:4212184/1‑93 (MQ=255)
                                                                         gAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATAc                <  2:1839055/93‑1 (MQ=255)
                                                                         gAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATAc                <  1:3614742/93‑1 (MQ=255)
                                                                         gAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATAc                >  2:3139147/1‑93 (MQ=255)
                                                                         gAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATAc                >  2:4619316/1‑93 (MQ=255)
                                                                         gAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATAc                <  2:1456033/93‑1 (MQ=255)
                                                                           aTGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACAt              >  2:3264049/1‑93 (MQ=255)
                                                                           aTGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACAt              <  2:2046948/93‑1 (MQ=255)
                                                                           aTGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACAt              <  1:4677813/93‑1 (MQ=255)
                                                                            tGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACAtt             <  1:682197/93‑1 (MQ=255)
                                                                              cAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTAc           <  2:3310611/93‑1 (MQ=255)
                                                                                aaGGTCACTGCCTCCCAGAACAACCGTATTATTTATCAAGAAAAGGTTCCACCAGGCTCATTTGCTGTTACCAATTTATTCAATACATTACAg         <  2:1294907/93‑1 (MQ=255)
                                                                                 aGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTCCAgg        >  1:2720611/1‑93 (MQ=255)
                                                                                 aGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAgg        <  1:3042386/93‑1 (MQ=255)
                                                                                 aGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAgg        <  1:4331477/93‑1 (MQ=255)
                                                                                  ggTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAggg       <  2:1683953/93‑1 (MQ=255)
                                                                                   gTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAgggg      <  2:2163648/93‑1 (MQ=255)
                                                                                     cACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCa    >  1:4543989/1‑93 (MQ=255)
                                                                                     cACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCa    <  2:1704520/93‑1 (MQ=255)
                                                                                      aCTGTCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCaa   >  1:3809748/1‑93 (MQ=255)
                                                                                      aCTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCaa   >  1:1291634/1‑93 (MQ=255)
                                                                                       cTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTCCAGGGGCaat  >  1:2925167/1‑92 (MQ=255)
                                                                                       cTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAAc  <  1:170443/93‑1 (MQ=255)
                                                                                       cTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAAc  >  2:3912596/1‑93 (MQ=255)
                                                                                       cTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAAc  >  1:4513829/1‑93 (MQ=255)
                                                                                       cTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAAc  >  2:2360103/1‑93 (MQ=255)
                                                                                          |                                                                                         
TGAAAAGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAAC  >  NC_000913/3186176‑3186355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: