Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 459,323 T→C G404G (GGT→GGC lon → ATP‑dependent protease La

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913459,3230TC96.8% 573.7 / 5.3 187G404G (GGT→GGClonATP‑dependent protease La
Reads supporting (aligned to +/- strand):  ref base T (2/4);  new base C (95/86);  total (97/90)
Fisher's exact test for biased strand distribution p-value = 4.30e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.50e-01

Only 100 of 197 total aligned reads displayed.

GGCGTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTG  >  NC_000913/459232‑459411
                                                                                           |                                                                                        
ggCGTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTa                                                                                         >  1:4366422/1‑93 (MQ=255)
    tAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACt                                                                                     >  2:1419844/1‑93 (MQ=255)
       atatGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGAt                                                                                  <  2:4329203/93‑1 (MQ=255)
         atGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATcc                                                                                <  2:2107855/93‑1 (MQ=255)
           gTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAg                                                                              >  2:2283105/1‑93 (MQ=255)
           gTCCGTATGGCGCTGGGAGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAg                                                                              <  1:4222531/93‑1 (MQ=255)
            tCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGa                                                                             >  1:3110196/1‑93 (MQ=255)
            tCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGa                                                                             <  1:298379/93‑1 (MQ=255)
              cGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGaaa                                                                           >  2:3536788/1‑93 (MQ=255)
              cGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGaaa                                                                           >  2:22321/1‑93 (MQ=255)
                tATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAAt                                                                         >  2:1185899/1‑93 (MQ=255)
                 aTGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATg                                                                        <  2:3264654/93‑1 (MQ=255)
                 aTGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATg                                                                        <  1:2821028/93‑1 (MQ=255)
                 aTGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATg                                                                        >  1:4477048/1‑93 (MQ=255)
                  tGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATgg                                                                       >  2:729532/1‑93 (MQ=255)
                  tGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATgg                                                                       >  1:3237622/1‑93 (MQ=255)
                      gcTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGaa                                                                   >  2:2090336/1‑93 (MQ=255)
                         gggCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGt                                                                >  1:2692422/1‑93 (MQ=255)
                          ggcggcGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTg                                                               >  1:252589/1‑93 (MQ=255)
                           gcggcgTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTgg                                                              <  1:453373/93‑1 (MQ=255)
                           gcggcgTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTgg                                                              <  1:4625538/93‑1 (MQ=255)
                           gcggcgTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTgg                                                              <  2:4229428/93‑1 (MQ=255)
                           gcggcgTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACAGCGGTACTATGCCGGGCAAACTGAGCCAGAAAATGGCGAAAGTgg                                                              >  1:4200676/1‑93 (MQ=255)
                            gggcgTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTggg                                                             <  2:3966154/92‑1 (MQ=255)
                            cggcgTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTggg                                                             <  2:516407/93‑1 (MQ=255)
                             ggcgTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGc                                                            <  1:2212223/93‑1 (MQ=255)
                             ggcgTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGc                                                            <  1:931442/93‑1 (MQ=255)
                             ggcgTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGc                                                            >  1:425998/1‑93 (MQ=255)
                              gcgtgcgtGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCg                                                           >  2:3357186/1‑93 (MQ=255)
                              gcgtgcgtGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCg                                                           <  1:3841726/93‑1 (MQ=255)
                               cgtgcgtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGt                                                          <  1:1108210/93‑1 (MQ=255)
                               cgtgcgtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGt                                                          <  2:2793838/93‑1 (MQ=255)
                                gtgcgtgGTGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTg                                                         >  2:1543709/1‑93 (MQ=255)
                                ggtcgtgATGAGGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTg                                                         <  1:1966250/90‑1 (MQ=255)
                                 tgcgtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGa                                                        >  2:1332732/1‑93 (MQ=255)
                                   cgtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGaaa                                                      >  1:2446809/1‑93 (MQ=255)
                                    gtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGaaaa                                                     <  1:192360/93‑1 (MQ=255)
                                     tgatgaAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGaaaaa                                                    <  2:1444244/93‑1 (MQ=255)
                                        aaaggCGAAAAGCGGTGTTCCCCGCCTTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAAccc                                                 <  2:4460852/89‑1 (MQ=255)
                                         gaAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCg                                                <  2:1926533/93‑1 (MQ=255)
                                         gaAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCg                                                >  2:888557/1‑93 (MQ=255)
                                              ggAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGtt                                           <  1:2271994/93‑1 (MQ=255)
                                               gAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTc                                          <  2:349971/93‑1 (MQ=255)
                                               gAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTc                                          >  1:392709/1‑93 (MQ=255)
                                                aaaTCCGTTGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTcc                                         <  2:4571240/93‑1 (MQ=255)
                                                aaaTCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTcc                                         <  1:351374/93‑1 (MQ=255)
                                                 aaTCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCt                                        <  2:244949/93‑1 (MQ=255)
                                                 aaTCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCt                                        <  1:3718771/93‑1 (MQ=255)
                                                  aTCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCtc                                       >  1:4093798/1‑92 (MQ=255)
                                                   tCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGc                                      <  1:1543430/93‑1 (MQ=255)
                                                   tCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGc                                      <  1:895283/93‑1 (MQ=255)
                                                     cGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTc                                    <  2:4071538/93‑1 (MQ=255)
                                                     cGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTc                                    <  2:1249136/93‑1 (MQ=255)
                                                      gcggTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGGTGTTCCTGCTCg                                   >  2:1114265/3‑93 (MQ=255)
                                                       tGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGa                                  >  1:2059147/1‑93 (MQ=255)
                                                       tGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGa                                  >  2:2349099/1‑93 (MQ=255)
                                                       tGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGa                                  >  1:3335379/1‑93 (MQ=255)
                                                       tGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGa                                  <  2:609523/93‑1 (MQ=255)
                                                        ggTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGAt                                 >  2:2386089/1‑93 (MQ=255)
                                                        ggTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGAt                                 <  1:1973965/93‑1 (MQ=255)
                                                        ggTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGAt                                 <  1:1354497/93‑1 (MQ=255)
                                                         gTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATg                                <  1:1763221/93‑1 (MQ=255)
                                                          tCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGGGTGAAAAACCCGCTGTTCCTGCTCTATga                               >  1:190117/1‑93 (MQ=255)
                                                          tCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATga                               >  1:4711095/1‑93 (MQ=255)
                                                          tCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATga                               <  1:333384/93‑1 (MQ=255)
                                                          tCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATga                               <  2:2496131/93‑1 (MQ=255)
                                                           cACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATgag                              >  2:3654974/1‑93 (MQ=255)
                                                            cccgccgTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATgaga                             <  1:2180381/92‑1 (MQ=255)
                                                            aCCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATgaga                             >  1:1173766/1‑93 (MQ=255)
                                                             ccgccgTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGAt                            <  2:3774571/93‑1 (MQ=255)
                                                              cgccgTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATc                           <  2:4136901/93‑1 (MQ=255)
                                                              cgccgTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATc                           <  1:1267312/93‑1 (MQ=255)
                                                              cgccgTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATc                           <  1:1496097/93‑1 (MQ=255)
                                                               gccgTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCg                          >  1:292797/1‑93 (MQ=255)
                                                               gccgTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCg                          >  1:1710246/1‑93 (MQ=255)
                                                               gccgTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCg                          >  1:593611/1‑93 (MQ=255)
                                                                  gTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACa                       >  1:681121/1‑93 (MQ=255)
                                                                      ttACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAAt                   <  1:2372957/93‑1 (MQ=255)
                                                                         cATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGtc                >  2:4389789/1‑93 (MQ=255)
                                                                         cATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGtc                <  1:4449187/93‑1 (MQ=255)
                                                                          aTCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGtct               <  1:2844811/93‑1 (MQ=255)
                                                                          aTCGGTTCTATGCCGGGCAAACAGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTAGATGAGATCGACAAAATGtct               >  2:2991154/1‑93 (MQ=255)
                                                                            cGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGtcttc             <  1:3883363/93‑1 (MQ=255)
                                                                            cGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGtcttc             <  2:836061/93‑1 (MQ=255)
                                                                             ggTTCTATGCAGGGTAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGtcttct            <  2:4366422/93‑1 (MQ=255)
                                                                              gTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTg           >  1:3588883/1‑93 (MQ=255)
                                                                               ttCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGa          >  1:475697/1‑93 (MQ=255)
                                                                               ttCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGa          <  1:1654831/93‑1 (MQ=255)
                                                                                tCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGAc         >  1:2370115/1‑93 (MQ=255)
                                                                                 cTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTTTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACa        <  2:3440806/93‑1 (MQ=255)
                                                                                 cTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACa        <  1:1117507/93‑1 (MQ=255)
                                                                                 cTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACa        <  2:4616727/93‑1 (MQ=255)
                                                                                  tATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACAt       <  2:475563/93‑1 (MQ=255)
                                                                                  tATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACAt       >  1:542115/1‑93 (MQ=255)
                                                                                    tGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGGTGAGATCGACAAAATGTCTTCTGACATGc     <  2:3868521/93‑1 (MQ=255)
                                                                                    tGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGc     <  2:2683001/93‑1 (MQ=255)
                                                                                    tGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGc     >  1:210319/1‑93 (MQ=255)
                                                                                      ccGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGt   <  2:3972522/93‑1 (MQ=255)
                                                                                      ccGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCAATGAGATCGACAAAATGTCTTCTGACATGCGt   <  1:768432/93‑1 (MQ=255)
                                                                                       cGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTg  >  1:4406618/1‑93 (MQ=255)
                                                                                           |                                                                                        
GGCGTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTG  >  NC_000913/459232‑459411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: