BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,802,880	A→G	M233T (ATG→ACG)	rfaP ←	RfaP

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,802,880	0	A	G	98.9%	563.4 / ‑3.2	174	M233T (ATG→ACG)	rfaP	RfaP
Reads supporting (aligned to +/- strand): ref base A (2/0); new base G (159/13); total (161/13)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.79e-01

Only 100 of 177 total aligned reads displayed.

TTGCGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCATCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCTTTA  >  NC_000913/3802790‑3802969

ttGCGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGGCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTc                                                                                         >  1:2533049/1‑93 (MQ=255)

 tGCGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTcc                                                                                        >  2:2545083/1‑93 (MQ=255)

    gTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaa                                                                                     >  1:3350448/1‑93 (MQ=255)

    gTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaa                                                                                     >  1:3512871/1‑93 (MQ=255)

     ttGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaaa                                                                                    >  1:1841628/1‑93 (MQ=255)

     ttGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaaa                                                                                    >  1:2285603/1‑93 (MQ=255)

     ttGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaaa                                                                                    >  1:4275185/1‑93 (MQ=255)

     ttGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaaa                                                                                    >  2:1049366/1‑93 (MQ=255)

     ttGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaaa                                                                                    >  2:2052210/1‑93 (MQ=255)

     ttGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaaa                                                                                    >  2:759637/1‑93 (MQ=255)

     ttGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaaa                                                                                    >  2:216795/1‑93 (MQ=255)

        tgtTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATa                                                                                 >  2:2388006/1‑93 (MQ=255)

        tgtTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATa                                                                                 >  1:2535907/1‑93 (MQ=255)

         gtTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATaa                                                                                >  1:2125373/1‑93 (MQ=255)

          ttCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTACAGGCGTCCCAAAATaaa                                                                               >  2:2451738/1‑93 (MQ=255)

          ttCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATaaa                                                                               >  1:1363884/1‑93 (MQ=255)

            cGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAAcc                                                                             >  1:4086618/1‑93 (MQ=255)

            cGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAAcc                                                                             >  1:2872659/1‑93 (MQ=255)

             gCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCt                                                                            >  1:3666039/1‑93 (MQ=255)

              ctctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCtt                                                                           >  2:3404489/1‑93 (MQ=255)

               tctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTc                                                                          >  2:4122637/1‑93 (MQ=255)

                ctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCa                                                                         >  2:3104002/1‑93 (MQ=255)

                 tttAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCAt                                                                        >  2:2217070/1‑93 (MQ=255)

                  ttAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATa                                                                       >  2:2108772/1‑93 (MQ=255)

                  ttAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATa                                                                       >  1:716217/1‑93 (MQ=255)

                      tACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATc                                                                   <  1:4028403/93‑1 (MQ=255)

                        cGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGc                                                                 >  1:981581/1‑93 (MQ=255)

                         gCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGcc                                                                >  1:640769/1‑93 (MQ=255)

                         gCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGcc                                                                >  1:3443407/1‑93 (MQ=255)

                           tCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAGAATAAACCTTCATAAATCGCCAg                                                              >  1:1959050/1‑93 (MQ=255)

                           tCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAg                                                              >  2:3304346/1‑93 (MQ=255)

                           tCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAg                                                              >  2:3869107/1‑93 (MQ=255)

                              gCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAAGCGTCCCAAAATAAACCTTCATAAATCGCCAGata                                                           >  2:81147/1‑93 (MQ=255)

                                cTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtc                                                         <  2:3029864/93‑1 (MQ=255)

                                cTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtc                                                         >  1:2536870/1‑93 (MQ=255)

                                 ttAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtct                                                        >  1:1151582/1‑93 (MQ=255)

                                 ttAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtct                                                        >  1:913969/1‑93 (MQ=255)

                                 ttAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtct                                                        >  1:3291267/1‑93 (MQ=255)

                                 ttAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtct                                                        >  2:4260563/1‑93 (MQ=255)

                                  tAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtctc                                                       >  2:3051117/1‑93 (MQ=255)

                                    aCGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCtt                                                     >  1:1648686/1‑93 (MQ=255)

                                     cGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCttt                                                    >  1:1061910/1‑93 (MQ=255)

                                     cGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCttt                                                    <  2:3686497/93‑1 (MQ=255)

                                        ttGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCg                                                 >  2:505320/1‑93 (MQ=255)

                                        ttGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCg                                                 >  2:1635606/1‑93 (MQ=255)

                                          gCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCATCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTc                                               >  1:3791706/1‑93 (MQ=255)

                                           ccATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTcg                                              >  2:4728980/1‑92 (MQ=255)

                                           ccATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCa                                              >  1:1968312/1‑93 (MQ=255)

                                             aTGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAgg                                            >  1:3428368/1‑93 (MQ=255)

                                               gTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGcc                                          >  2:1247090/1‑93 (MQ=255)

                                                ttCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCa                                         >  1:4327793/1‑93 (MQ=255)

                                                ttCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCa                                         >  1:2340129/1‑93 (MQ=255)

                                                ttCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCa                                         >  2:2534949/1‑93 (MQ=255)

                                                ttCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCa                                         >  1:679912/1‑93 (MQ=255)

                                                 tCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCaa                                        >  1:917066/1‑93 (MQ=255)

                                                  cAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAat                                       <  2:576806/93‑1 (MQ=255)

                                                   aaTAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAata                                      >  1:2755935/1‑93 (MQ=255)

                                                    aTAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAatat                                     >  1:1310965/1‑93 (MQ=255)

                                                     tAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATAtt                                    >  2:322364/1‑93 (MQ=255)

                                                     tAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATAtt                                    >  1:4698514/1‑93 (MQ=255)

                                                       aaTTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCa                                  >  1:494442/1‑93 (MQ=255)

                                                       aaTTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCa                                  >  2:4687081/1‑93 (MQ=255)

                                                        aTTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCAt                                 >  1:3683158/1‑93 (MQ=255)

                                                        aTTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCAt                                 >  1:3657923/1‑93 (MQ=255)

                                                        aTTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCAt                                 >  2:1395402/1‑93 (MQ=255)

                                                        aTTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCAt                                 >  1:4184829/1‑93 (MQ=255)

                                                        aTTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCAt                                 >  1:2287751/1‑93 (MQ=255)

                                                        aTTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCAt                                 >  1:4184830/1‑93 (MQ=255)

                                                         ttCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCAtt                                >  2:4662097/1‑93 (MQ=255)

                                                         ttCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCAtt                                >  2:395788/1‑93 (MQ=255)

                                                         ttCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCAtt                                <  1:2600304/93‑1 (MQ=255)

                                                           cTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATtga                              >  2:2892143/1‑93 (MQ=255)

                                                           cTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATtga                              >  1:4085691/1‑93 (MQ=255)

                                                                cAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATgaga                         <  2:2675320/93‑1 (MQ=255)

                                                                  agagACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGaaa                       >  2:1728035/1‑93 (MQ=255)

                                                                   gagaCAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAat                      >  2:1515207/1‑93 (MQ=255)

                                                                     gaCAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAatat                    >  2:4026071/1‑93 (MQ=255)

                                                                      aCAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAAtata                   <  1:1542129/93‑1 (MQ=255)

                                                                      aCAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAAtata                   >  2:386543/1‑93 (MQ=255)

                                                                       cAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATaa                  >  2:214345/1‑93 (MQ=255)

                                                                         atatTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAAc                >  2:887354/1‑93 (MQ=255)

                                                                         atatTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAAc                >  1:1005526/1‑93 (MQ=255)

                                                                         atatTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAAc                >  1:2234359/1‑93 (MQ=255)

                                                                         atatTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAAc                >  1:2983625/1‑93 (MQ=255)

                                                                          tatTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAAcc               >  1:4526539/1‑93 (MQ=255)

                                                                          tatTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAAca               >  1:1657714/1‑92 (MQ=255)

                                                                           atTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCa              >  1:1731583/1‑93 (MQ=255)

                                                                             tttGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAAt            >  1:4484834/1‑93 (MQ=255)

                                                                                gCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAg         >  1:3604411/1‑93 (MQ=255)

                                                                                  gTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGt       >  1:1004292/1‑93 (MQ=255)

                                                                                  gTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGt       >  1:1430120/1‑93 (MQ=255)

                                                                                  gTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGt       >  1:4157505/1‑93 (MQ=255)

                                                                                   tAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTc      >  2:1288629/1‑93 (MQ=255)

                                                                                   tAAAGGCATCCCAAAATAAACCTTCATAAATCTCCAGATATCTCTTTGCGTCAGGACAATATTCATTGATGAGAAATATAAACACATCAGGTc      >  1:1925383/1‑93 (MQ=255)

                                                                                    aaaGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCt     >  2:258304/1‑93 (MQ=255)

                                                                                     aaGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCtt    >  1:4125160/1‑93 (MQ=255)

                                                                                     aaGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCtt    >  1:25726/1‑93 (MQ=255)

                                                                                     aaGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCtt    >  1:4577250/1‑93 (MQ=255)

                                                                                     aaGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCtt    >  2:3418046/1‑93 (MQ=255)

                                                                                     aaGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCtt    >  1:789830/1‑93 (MQ=255)

TTGCGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCATCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCTTTA  >  NC_000913/3802790‑3802969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`