BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,845,193	G→A	T354T (ACC→ACT)	uhpC ←	UhpC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,845,193	0	G	A	96.9%	441.7 / ‑1.4	129	T354T (ACC→ACT)	uhpC	UhpC
Reads supporting (aligned to +/- strand): ref base G (3/1); new base A (74/51); total (77/52)
Fisher's exact test for biased strand distribution p-value = 6.48e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 135 total aligned reads displayed.

CCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAAT  >  NC_000913/3845103‑3845282

ccccGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGt                                                                                         >  1:4071081/1‑93 (MQ=255)

ccccGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGt                                                                                         <  2:4490175/93‑1 (MQ=255)

ccccGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGt                                                                                         <  2:1616767/93‑1 (MQ=255)

ccccGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑AACAATAGt                                                                                         >  2:1888605/1‑93 (MQ=255)

 cccGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTg                                                                                        <  2:2407908/93‑1 (MQ=255)

 cccGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCACCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTg                                                                                        >  2:4104750/1‑93 (MQ=255)

   cGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTgaa                                                                                      <  1:688631/93‑1 (MQ=255)

   cGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTgaa                                                                                      >  2:1307872/1‑93 (MQ=255)

   cGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTgaa                                                                                      <  1:2170584/93‑1 (MQ=255)

   cGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTgaa                                                                                      <  1:219741/93‑1 (MQ=255)

   cGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTgaa                                                                                      <  1:219742/93‑1 (MQ=255)

     tCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTgaaga                                                                                    <  2:4447618/93‑1 (MQ=255)

       gccgccCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGaagaag                                                                                  >  1:123979/1‑93 (MQ=255)

         cgccCCTGCCGCCTCTTTGTGGGAACACTCTGGCGCCGCCATACCGATTAACACCTGTGGCCCAACGCA‑AAAAAA‑ACCAAAGGGcaagaacag                                                                                >  2:3905309/1‑90 (MQ=255)

         cgccCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCa                                                                                <  1:1621453/93‑1 (MQ=255)

         cgccCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCa                                                                                <  2:1358680/93‑1 (MQ=255)

          cccccTCCCGCCTCTTTGTAGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAg                                                                               <  2:939160/92‑1 (MQ=255)

             ccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGtt                                                                            >  2:3861812/1‑93 (MQ=255)

                gccgccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGcc                                                                         <  1:402191/93‑1 (MQ=255)

                 ccgccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCt                                                                        <  2:799796/93‑1 (MQ=255)

                  cgccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCt                                                                        >  1:3251880/1‑93 (MQ=255)

                  cgccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTg                                                                       >  1:1059910/1‑93 (MQ=255)

                  cgccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGAGTAACATCTGTGAGGCAAAACC‑AAAAAACACCCAACGTACAGAAGGAGGTTGCCt                                                                        >  1:3251881/1‑93 (MQ=255)

                   gccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGc                                                                      >  1:321463/1‑93 (MQ=255)

                   gccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGc                                                                      >  2:2676435/1‑93 (MQ=255)

                   gccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGc                                                                      >  2:270371/1‑93 (MQ=255)

                    ccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCa                                                                     <  2:3268423/93‑1 (MQ=255)

                    ccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCa                                                                     >  1:3423888/1‑93 (MQ=255)

                     ctctTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCAt                                                                    >  1:3807461/1‑93 (MQ=255)

                       ctTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCa                                                                  <  2:771760/93‑1 (MQ=255)

                          tgtgGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGt                                                               >  1:327280/1‑93 (MQ=255)

                           gggggAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTa                                                              <  2:4562698/91‑1 (MQ=255)

                            tgGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAg                                                             >  1:3023128/1‑93 (MQ=255)

                            tgGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAg                                                             >  1:3023127/1‑93 (MQ=255)

                             gggAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGc                                                            >  2:4536904/1‑93 (MQ=255)

                               gAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTg                                                          >  2:4649655/1‑93 (MQ=255)

                                 acacTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGc                                                        >  1:4381070/1‑93 (MQ=255)

                                   acTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCaa                                                      >  1:4444193/1‑93 (MQ=255)

                                    ctctGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCaaa                                                     <  1:2576978/93‑1 (MQ=255)

                                     tctGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAAt                                                    >  2:1107521/1‑93 (MQ=255)

                                     tctGCCGCCGCCATACCGAGTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTATCTGGCAAAt                                                    <  2:3001066/93‑1 (MQ=255)

                                        gccgccgccATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGc                                                 >  2:1139974/1‑93 (MQ=255)

                                         ccgccgccATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCa                                                <  1:3118585/93‑1 (MQ=255)

                                           gccgccATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATc                                              >  2:4144297/1‑93 (MQ=255)

                                           gccgccATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATc                                              >  2:4144298/1‑93 (MQ=255)

                                            ccgccATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCa                                             >  2:3318333/1‑93 (MQ=255)

                                             cgccATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAg                                            >  1:1637744/1‑93 (MQ=255)

                                                cATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCca                                         >  2:12480/1‑93 (MQ=255)

                                                  tACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCcaca                                       >  2:303872/1‑93 (MQ=255)

                                                  tACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCcaca                                       >  2:3839363/1‑93 (MQ=255)

                                                  tACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCcaca                                       >  1:2481759/1‑93 (MQ=255)

                                                  tACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGACAAATGGCATCAGCcaca                                       >  1:2512461/1‑93 (MQ=255)

                                                   aCCGATTAACAGCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAg                                      <  2:1405070/93‑1 (MQ=255)

                                                    ccGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAgg                                     >  2:4406914/1‑93 (MQ=255)

                                                    ccGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAgg                                     <  1:4503604/93‑1 (MQ=255)

                                                     cGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAggg                                    <  1:2131845/93‑1 (MQ=255)

                                                      gATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGa                                   >  1:2046908/1‑93 (MQ=255)

                                                       aTTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAg                                  >  2:4616478/1‑93 (MQ=255)

                                                       aTTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAg                                  >  1:4453352/1‑93 (MQ=255)

                                                       aTTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAg                                  <  1:973484/93‑1 (MQ=255)

                                                        ttAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGc                                 >  1:1679790/1‑93 (MQ=255)

                                                         taccATCTGGGGGCAAAAGAC‑AAAACA‑GCTAATAGTGAAGACGCGGGTTACATGCATCACGTAGCAGGCAAAGGGCTGCAGCCACAGGGAGcc                                <  2:1919805/90‑1 (MQ=255)

                                                         tAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGcc                                <  1:670655/93‑1 (MQ=255)

                                                         tAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGcc                                >  2:3725744/1‑93 (MQ=255)

                                                             aTCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACt                            >  1:3896027/1‑93 (MQ=255)

                                                             aTCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACt                            <  2:749109/93‑1 (MQ=255)

                                                             aTCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACt                            >  2:1879709/1‑93 (MQ=255)

                                                              tCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTg                           >  2:1560622/1‑93 (MQ=255)

                                                              tCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTg                           >  1:65784/1‑93 (MQ=255)

                                                                tgtgGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGaa                         >  2:677627/1‑93 (MQ=255)

                                                                tgtgGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGaa                         <  2:2039819/93‑1 (MQ=255)

                                                                 gtgGGCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGaaa                        <  1:4530700/93‑1 (MQ=255)

                                                                    ggCCAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCa                     >  2:3214107/1‑93 (MQ=255)

                                                                      ccAAAGAC‑AAAAAA‑ACCAATAGTTAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCaaa                   <  2:688019/93‑1 (MQ=255)

                                                                      ccAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCaaa                   <  2:4658875/93‑1 (MQ=255)

                                                                       cAAAGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCaaaa                  >  1:2233538/1‑93 (MQ=255)

                                                                        aaaGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAAt                 >  1:1556485/1‑93 (MQ=255)

                                                                        aaaGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAAt                 >  2:2077587/1‑93 (MQ=255)

                                                                         aaGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAAtt                >  2:1520671/1‑93 (MQ=255)

                                                                         aaGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAAtt                <  1:867042/93‑1 (MQ=255)

                                                                          aGAC‑AAAAAA‑CCCAATAGATAAGAAGCAGGGTGCCACCCGCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTc               <  1:363837/93‑1 (MQ=255)

                                                                          aGAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTc               <  2:242815/93‑1 (MQ=255)

                                                                           gAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTcc              <  1:1055093/93‑1 (MQ=255)

                                                                           gAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTcc              >  1:270012/1‑93 (MQ=255)

                                                                           gAC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATAGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTcc              >  2:2298371/1‑93 (MQ=255)

                                                                           aaC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTcc              <  1:4636602/92‑1 (MQ=255)

                                                                            aC‑AAAAAA‑ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCcg             <  1:1385794/93‑1 (MQ=255)

                                                                               aaaaaa‑aCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCcggc           <  1:3338544/93‑1 (MQ=255)

                                                                                aaaaa‑aCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCcggcg          >  1:4161692/1‑93 (MQ=255)

                                                                                aaaaa‑aCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCcggcg          >  1:3440270/1‑93 (MQ=255)

                                                                                  aaa‑aCCAATAGTGAAGAAGCAGTTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCggcggc        <  2:2523687/93‑1 (MQ=255)

                                                                                    a‑aCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGa      >  1:2798128/1‑93 (MQ=255)

                                                                                      aCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaa     >  2:3038721/1‑93 (MQ=255)

                                                                                      aCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaa     >  2:56749/1‑93 (MQ=255)

                                                                                      aCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaa     >  1:3366609/1‑93 (MQ=255)

                                                                                       ccAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaaa    <  1:1556379/93‑1 (MQ=255)

                                                                                        cAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaaaa   >  2:4416035/1‑93 (MQ=255)

                                                                                        cAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaaaa   <  2:397729/93‑1 (MQ=255)

                                                                                        cAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaaaa   <  2:913221/93‑1 (MQ=255)

                                                                                         aaTAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAAt  >  1:90016/1‑93 (MQ=255)

CCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGAC‑AAAAAA‑ACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAAT  >  NC_000913/3845103‑3845282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`