Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,850,058 G→A G118G (GGC→GGT ilvB ← acetolactate synthase I large subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,850,0580GA95.7% 380.5 / 2.1 116G118G (GGC→GGTilvBacetolactate synthase I large subunit
Reads supporting (aligned to +/- strand):  ref base G (3/2);  new base A (57/54);  total (60/56)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.99e-01

Only 100 of 124 total aligned reads displayed.

GGGAGTTCTTCGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTGCCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGT  >  NC_000913/3849969‑3850147
                                                                                         |                                                                                         
gggAGTTCTTCGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCg                                                                                        >  1:2886532/1‑93 (MQ=255)
gggAGTTCTTCGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCg                                                                                        <  1:2710083/93‑1 (MQ=255)
  gAGTTCTTCGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGat                                                                                      <  1:3973983/93‑1 (MQ=255)
   aGTTCTTCGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGatc                                                                                     <  1:2124713/93‑1 (MQ=255)
    gTTCTTCGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGatca                                                                                    >  2:1039534/1‑93 (MQ=255)
      tcttcGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGatcatc                                                                                  <  2:3061066/93‑1 (MQ=255)
      tcttcGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGatcatc                                                                                  <  2:3712061/93‑1 (MQ=255)
      tcttcGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGatcatc                                                                                  <  2:3712062/93‑1 (MQ=255)
      tcttcGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGatcatc                                                                                  <  2:3715584/93‑1 (MQ=255)
      tcttcGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGatcatc                                                                                  <  2:3715585/93‑1 (MQ=255)
        ttcGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGa                                                                                >  1:1095372/1‑93 (MQ=255)
        ttcGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGa                                                                                <  2:3536212/93‑1 (MQ=255)
        ttcGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGa                                                                                <  1:4383293/93‑1 (MQ=255)
        ttcGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGa                                                                                >  1:1868271/1‑93 (MQ=255)
        ttcGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCAATTCCTGGAAGGCGTCGGTACAGATCATCGa                                                                                >  1:2789476/1‑93 (MQ=255)
         tcGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAg                                                                               <  1:3049809/93‑1 (MQ=255)
          cGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTGCCGATCATCGAgg                                                                              >  2:1570139/1‑93 (MQ=255)
           gATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGc                                                                             <  2:4305556/93‑1 (MQ=255)
           gATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGc                                                                             <  1:4260089/93‑1 (MQ=255)
            atatGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCg                                                                            <  1:3230552/93‑1 (MQ=255)
              atGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCggg                                                                          <  1:1964235/93‑1 (MQ=255)
               tGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGa                                                                         <  2:3553942/93‑1 (MQ=255)
               tGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGa                                                                         <  1:87243/93‑1 (MQ=255)
                 gcTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAAc                                                                       <  1:489948/92‑1 (MQ=255)
                    gACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTg                                                                    >  2:1104715/1‑93 (MQ=255)
                      ccAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGAc                                                                  <  1:2790366/93‑1 (MQ=255)
                      ccAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGAc                                                                  <  1:4134257/93‑1 (MQ=255)
                       cAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAAACTGAcc                                                                 >  2:3892868/1‑93 (MQ=255)
                        aGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGTGAACCTGACCa                                                                >  2:3831158/1‑93 (MQ=255)
                        aGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCa                                                                >  1:2139635/1‑93 (MQ=255)
                         gATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAg                                                               <  1:3857872/93‑1 (MQ=255)
                         gATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAg                                                               <  1:3857873/93‑1 (MQ=255)
                          aTAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGt                                                              <  1:4560649/93‑1 (MQ=255)
                            aGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGa                                                            >  2:3280081/1‑93 (MQ=255)
                            aGTTGTGTTTGGTGATGGGGATAGAGATGCCGTACGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGa                                                            <  1:2866778/93‑1 (MQ=255)
                             tttGTGTGTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTGCCGATCATCGAGGCGGGAACCTGACCAGTGAt                                                           <  2:1972907/92‑1 (MQ=255)
                             gTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGAt                                                           <  1:1255666/93‑1 (MQ=255)
                              ttGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATg                                                          >  2:4549805/1‑93 (MQ=255)
                              ttGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCATCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATg                                                          >  2:443778/1‑93 (MQ=255)
                               tgtgTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGc                                                         <  2:2156158/93‑1 (MQ=255)
                                   tttGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAAt                                                     >  1:2759348/1‑93 (MQ=255)
                                   gttGGTGATGGGGATAGAGATGTGGTAGGTGTCCACATCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAAt                                                     <  1:1613632/92‑1 (MQ=255)
                                    ttGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGGAGCTGACCAGCGATGCAAATc                                                    >  2:577715/1‑93 (MQ=255)
                                     tGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCa                                                   >  1:4108079/1‑93 (MQ=255)
                                        tGATGTGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCg                                                <  1:3431213/93‑1 (MQ=255)
                                         gATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCgg                                               <  2:572000/93‑1 (MQ=255)
                                         gATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAATCAGCggg                                              >  1:2565777/1‑93 (MQ=255)
                                          aTGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCggg                                              <  2:1265153/93‑1 (MQ=255)
                                          aTGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCggg                                              >  1:4182639/1‑93 (MQ=255)
                                          aTGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCggg                                              >  2:739602/1‑93 (MQ=255)
                                           tGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGa                                             <  2:3313262/93‑1 (MQ=255)
                                           tGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGa                                             <  1:2728053/93‑1 (MQ=255)
                                            ggggATAGAGATGCCGGAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGGGATGCAAATCAGCGGGag                                            >  2:4356881/1‑92 (MQ=255)
                                              ggATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATgg                                          <  1:882581/93‑1 (MQ=255)
                                                 tAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGaat                                       <  2:2212691/93‑3 (MQ=255)
                                                 tAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGt                                       <  1:915229/93‑1 (MQ=255)
                                                    agaTGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCa                                    >  1:3899649/1‑93 (MQ=255)
                                                    agaTGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGAGATGCAAATCAGCGGGATGGCGTCCa                                    >  1:3899650/1‑93 (MQ=255)
                                                      aTGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGc                                  >  1:2594937/1‑93 (MQ=255)
                                                          cGTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCcgcg                              >  2:3622740/1‑93 (MQ=255)
                                                           gTAGGTGTCCACTTCCTGGAAGGCGTCGGTGCCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCgcgc                             >  1:2083846/1‑93 (MQ=255)
                                                           gTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCgcgc                             >  2:113569/1‑93 (MQ=255)
                                                           gTAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGACGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCgcgc                             <  1:2753421/93‑1 (MQ=255)
                                                            tAGGTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCa                            >  1:4158054/1‑93 (MQ=255)
                                                              ggTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATc                          >  1:2422849/1‑93 (MQ=255)
                                                              ggTGTCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATc                          >  1:2713562/1‑93 (MQ=255)
                                                               gtgtCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCg                         >  1:22000/1‑93 (MQ=255)
                                                               gtgtCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCg                         >  2:4634957/1‑93 (MQ=255)
                                                               gggtCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCg                         <  1:475353/91‑1 (MQ=255)
                                                                 gtCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGc                       >  2:3126931/1‑93 (MQ=255)
                                                                 gtCCACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGc                       >  1:112805/1‑93 (MQ=255)
                                                                   ccACTTCCTGGAAGGCGTCGGTGCCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCaa                     <  1:3118584/93‑1 (MQ=255)
                                                                   ccACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCaa                     >  2:3671380/1‑93 (MQ=255)
                                                                    cACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCCAt                    >  1:1722922/1‑93 (MQ=255)
                                                                    cACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAAt                    <  1:1264259/93‑1 (MQ=255)
                                                                    cACTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAAt                    <  1:862854/93‑1 (MQ=255)
                                                                     ccTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATg                   <  1:1356809/92‑1 (MQ=255)
                                                                      cTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATgg                  >  2:4020261/1‑93 (MQ=255)
                                                                      cTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATgg                  >  2:3852994/1‑93 (MQ=255)
                                                                      cTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATgg                  <  1:2309808/93‑1 (MQ=255)
                                                                      cTTCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATgg                  >  2:184212/1‑93 (MQ=255)
                                                                       ttCCTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGc                 <  2:1827572/93‑1 (MQ=255)
                                                                         ccTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCgg               <  2:3192233/93‑1 (MQ=255)
                                                                          cTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGt              >  2:3269430/1‑93 (MQ=255)
                                                                          cTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGt              >  2:2420338/1‑93 (MQ=255)
                                                                          cTGGAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGt              >  2:1800319/1‑93 (MQ=255)
                                                                            ggAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCa            >  1:3094894/1‑93 (MQ=255)
                                                                            ggAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCa            >  1:4629491/1‑93 (MQ=255)
                                                                            ggAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCa            >  1:3313314/1‑93 (MQ=255)
                                                                            ggAAGGCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGAGGTCa            >  1:3094895/1‑93 (MQ=255)
                                                                                ggCGTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAg        <  2:1915334/93‑1 (MQ=255)
                                                                                ggCGTCGGTACCGATAGTCGAGGCGGTAACGTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAg        <  2:1915333/93‑1 (MQ=255)
                                                                                   gTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCTCGCATCGGCAATGGCGGTCACCAGGtt     <  1:894677/93‑1 (MQ=255)
                                                                                   gTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGtt     >  1:4143354/1‑93 (MQ=255)
                                                                                   gTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGtt     <  2:2954571/93‑1 (MQ=255)
                                                                                   gTCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGtt     >  2:2136613/1‑93 (MQ=255)
                                                                                    tCGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTa    >  2:1913760/1‑93 (MQ=255)
                                                                                     cGGTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAg   >  2:3075426/1‑93 (MQ=255)
                                                                                      ggTACCGATCATCGAGGCGGGGACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGt  >  2:3008396/1‑93 (MQ=255)
                                                                                      ggTACCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGt  <  1:2679869/93‑1 (MQ=255)
                                                                                         |                                                                                         
GGGAGTTCTTCGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGAGATGCCGTAGGTGTCCACTTCCTGGAAGGCGTCGGTGCCGATCATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGT  >  NC_000913/3849969‑3850147

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: