| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,957,551 | +T | intergenic (‑120/‑741) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,957,550 | 1 | . | T | 99.4% | 654.5 / ‑3.8 | 177 | intergenic (‑119/‑742) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (77/99); total (78/99) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.41e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.16e-01 | |||||||||||
Only 100 of 187 total aligned reads displayed.
TAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑C‑T‑G‑C‑TCGCA‑GGT‑C‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > NC_000913/3957470‑3957626 | tAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGT‑c‑c < 2:969172/93‑1 (MQ=255)tAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGT‑c‑c > 1:3915776/1‑93 (MQ=255) aGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGT‑c‑cc < 1:1155389/93‑2 (MQ=255) aGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGT‑c‑cc < 1:3983779/93‑2 (MQ=255) aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGT‑c‑cctca > 2:1048148/1‑89 (MQ=255) aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAA‑C‑CGG‑G‑CTTCGCA‑GGT‑c‑cctca > 1:1354221/1‑89 (MQ=255) gATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAg > 1:2021806/1‑93 (MQ=255) gATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAg > 2:759493/1‑93 (MQ=255) gATCCGCAGAGGCTACCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATAGGGCAAAAGCCCGGAAAAG‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAg < 2:3701423/93‑1 (MQ=255) aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAgg > 2:1247691/1‑93 (MQ=255) ccGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAgggg > 2:865979/1‑93 (MQ=255) ccGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAgggg < 2:4565138/93‑1 (MQ=255) ccGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAgggg > 2:3143894/1‑93 (MQ=255) cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGga < 1:1627949/93‑1 (MQ=255) gCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGgag > 1:1817352/1‑93 (MQ=255) aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGaa < 1:2513073/93‑1 (MQ=255) aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGGCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAggggggta > 1:5871785/1‑89 (MQ=255) gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGaaa < 2:1386428/93‑1 (MQ=255) cTACCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCGGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACtt < 2:110304/93‑1 (MQ=255) tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGGC‑C‑C‑TCAAGGGGAGAAAACTTa > 2:1320988/1‑93 (MQ=255) tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTa > 2:6646005/1‑93 (MQ=255) tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTa < 1:5144386/93‑1 (MQ=255) aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGTGAAAACTTAg < 1:4930401/93‑1 (MQ=255) aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAg > 2:808080/1‑93 (MQ=255) aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAg < 1:4410629/93‑1 (MQ=255) aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAg < 2:3972214/93‑1 (MQ=255) aaCGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAACCCGGAAAATCC‑C‑G‑G‑CTTCGCAGGGC‑C‑C‑TCAAGGGGAGGAAACCTAg > 1:4331500/1‑93 (MQ=255) aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAgg > 2:6653436/1‑93 (MQ=255) aCGTAATTGTAAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑GGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAgg < 2:3423881/93‑1 (MQ=255) gTAATTGTCAGTCAGGGAGTGGCTGGTACATATCTGGCAACAGCCCCGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGG‑CGC‑TCAAGGGGAGAAAACTTAAGGc > 1:4687706/1‑93 (MQ=255) gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGc > 1:3481259/1‑93 (MQ=255) gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCAGGAAAAA‑CAG‑G‑G‑CTTCGCA‑GGTGC‑C‑TCAAGGGGAGTCAACTTAGGGc > 2:6321610/1‑93 (MQ=255) tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGcc < 2:1515009/93‑1 (MQ=255) aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCctc < 1:3218724/93‑1 (MQ=255) aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCctc < 2:362953/93‑1 (MQ=255) aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCctc < 2:1989253/93‑1 (MQ=255) tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTa > 1:5683762/1‑93 (MQ=255) gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTAt < 2:699866/93‑1 (MQ=255) tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATg > 2:4454262/1‑93 (MQ=255) tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATg < 2:6693520/93‑1 (MQ=255) tagtcagGCAGTGGCTGGTACATATAAGGCAAAAACCCGTAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGAGGAGAAAACTTAGGGCCTCTATgg < 1:5029746/92‑1 (MQ=255) cagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGT‑C‑CATCAAGGGGAGAAAACTTAGGGCCTCTATgg < 2:2120300/93‑1 (MQ=255) agtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATggg < 2:4294687/93‑1 (MQ=255) ggcagGGAGTGGCTGGTACATAAATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGc < 1:4158017/91‑1 (MQ=255) tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt > 1:1038896/1‑93 (MQ=255) cagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa < 2:4107296/93‑1 (MQ=255) agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGGAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc > 1:6448225/1‑93 (MQ=255) agGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑C‑C‑TGG‑CTTCGCA‑GGTCC‑C‑TCAAGGGGGGCAAACTTAGGGCCTCTATGGGCTAc > 2:3300764/1‑93 (MQ=255) gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa > 1:3781667/1‑93 (MQ=255) ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa > 2:3617409/1‑93 (MQ=255) ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa < 2:418332/93‑1 (MQ=255) ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa > 2:4863574/1‑93 (MQ=255) gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa < 2:5109465/93‑1 (MQ=255) gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa < 2:6489889/93‑1 (MQ=255) gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa < 2:153785/93‑1 (MQ=255) gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa > 2:6298493/1‑93 (MQ=255) aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg > 1:3079269/1‑93 (MQ=255) gTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt < 1:4039461/93‑1 (MQ=255) gTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt > 1:5409305/1‑93 (MQ=255) gTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt > 1:6611024/1‑93 (MQ=255) tGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc > 1:6345480/1‑93 (MQ=255) tGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc > 1:2157087/1‑93 (MQ=255) cTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt < 1:6265014/93‑1 (MQ=255) tGGTACATATATGGCAAAAGCCGGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa < 2:6158199/93‑1 (MQ=255) tGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa > 1:5335640/1‑93 (MQ=255) tGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa < 2:2427798/93‑1 (MQ=255) tGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa < 1:4620272/93‑1 (MQ=255) ggTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 1:563064/93‑1 (MQ=255) ggTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 1:4504490/93‑1 (MQ=255) ggTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 1:2707573/93‑1 (MQ=255) tACATATATGGCAAAAGCCGGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg < 1:1314297/93‑1 (MQ=255) tACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg < 2:2910676/93‑1 (MQ=255) tACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg < 2:3684660/93‑1 (MQ=255) aCATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg < 2:4838305/93‑1 (MQ=255) aCATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg < 1:1076434/93‑1 (MQ=255) cATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg < 1:4948776/93‑1 (MQ=255) cATATATGGCAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg > 2:463073/1‑93 (MQ=255) tatatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggggt > 2:2214145/1‑92 (MQ=255) tatatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa > 1:4841110/1‑93 (MQ=255) atatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt > 1:3395212/1‑93 (MQ=255) atatGGCAAAAGCCCGGAAAAT‑C‑C‑G‑GTCTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt < 1:842305/93‑1 (MQ=255) tatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg < 2:2575804/93‑1 (MQ=255) tatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg < 1:2072800/93‑1 (MQ=255) tatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg < 1:376323/93‑1 (MQ=255) atGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATgg > 1:5286981/1‑93 (MQ=255) tGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt > 2:6009949/1‑93 (MQ=255) tGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt < 2:5606876/93‑1 (MQ=255) tGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt > 2:4964314/1‑93 (MQ=255) gCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta > 1:3624222/1‑93 (MQ=255) cAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat < 2:5518218/93‑1 (MQ=255) cAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat < 2:5078529/93‑1 (MQ=255) aaaaGCCCGGAAAAT‑CGG‑G‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt < 1:3583311/93‑1 (MQ=255) aaaaGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt > 1:4783063/1‑93 (MQ=255) aaaGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt > 2:1325332/1‑93 (MQ=255) aaaGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt > 1:3299876/1‑93 (MQ=255) aaaGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt > 1:4344103/1‑93 (MQ=255) cccGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt < 1:6431476/93‑1 (MQ=255) ccGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg > 2:2761726/1‑93 (MQ=255) ccGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg > 2:5415787/1‑93 (MQ=255) ccGGAAAAT‑C‑CGG‑G‑CTTCGCA‑GGTCC‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg > 1:3249338/1‑93 (MQ=255) | TAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑C‑T‑G‑C‑TCGCA‑GGT‑C‑C‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > NC_000913/3957470‑3957626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |