Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,008,391	+C	coding (474/516 nt)	b4555 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,008,391	1	.	C	100.0%	258.1 / NA	82	K158N (AAG→AAC)	b4555	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (35/47);  total (35/47)

CTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGC‑‑‑G‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATT‑G‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCT  >  NC_000913/4008300‑4008457                                                                                               |                                                                                cTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAg                                                                                  <  1:637968/93‑1 (MQ=255) cTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAg                                                                                  <  2:4236717/93‑1 (MQ=255)  tCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAgc                                                                                 >  2:1639560/1‑92 (MQ=255)  tCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GGTTCAAAAAGCCATGCGCTGGAAg‑g                                                                                >  1:4684892/1‑93 (MQ=255)    gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGGGGC‑GTTTCAAAAAGGCATGCGCTGGGAgcgg                                                                               >  1:4622663/1‑90 (MQ=255)    gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAgcgg                                                                               >  2:2590161/1‑90 (MQ=255)     ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAgcggt                                                                              <  1:6133667/93‑5 (MQ=255)     ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAgcggt                                                                              <  2:4991005/93‑5 (MQ=255)     ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAgcggt                                                                              <  2:4619227/93‑5 (MQ=255)     ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAgcggt                                                                              <  1:4157802/93‑5 (MQ=255)     ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAgcggt                                                                              <  2:1965384/93‑5 (MQ=255)     ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAgcggt                                                                              <  1:699050/93‑5 (MQ=255)     ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAgcggg                                                                              >  2:4528071/1‑89 (MQ=255)     ttGGGGCGATCACGTCAACGTCAGTTTCTCTGCCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAgcggt                                                                              <  1:5037315/93‑5 (MQ=255)           cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aa                                                                 <  1:4432852/93‑1 (MQ=255)            gATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aag                                                                >  1:1895079/1‑92 (MQ=255)            gATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aag                                                                >  2:6599853/1‑92 (MQ=255)             aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTTA‑AAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aaga                                                               >  2:3194996/1‑91 (MQ=255)             aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aaga                                                               >  2:6472005/1‑91 (MQ=255)              tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGG‑GTTTCAAAAAGCCATGCGCTGGCAGCGGTGGC‑‑‑G‑‑‑‑aagaa                                                              >  1:6384297/1‑90 (MQ=255)              tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aagaa                                                              <  2:1931685/93‑4 (MQ=255)              tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aagaa                                                              >  1:6660115/1‑90 (MQ=255)               cgcgTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aagaaa                                                             <  1:4598119/93‑5 (MQ=255)                                               tCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGtt                                >  2:1132533/1‑93 (MQ=255)                                               tCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGtt                                >  2:6713870/1‑93 (MQ=255)                                               tCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGtt                                <  2:93170/93‑1 (MQ=255)                                               tCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCAGGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGtt                                <  1:2981338/93‑1 (MQ=255)                                               tCTGGAAGTGATGGCGGGCGGC‑GTGTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGtt                                <  1:6109615/93‑1 (MQ=255)                                                cTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGttt                               <  1:1673509/93‑2 (MQ=255)                                                cTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGttt                               <  1:1567329/93‑2 (MQ=255)                                                cTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGttt                               >  2:6652401/1‑92 (MQ=255)                                                cTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGttt                               >  1:990386/1‑92 (MQ=255)                                                  ggAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGtttgg                             >  2:5544515/1‑90 (MQ=255)                                                  ggAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGtttgg                             >  2:3952663/1‑90 (MQ=255)                                                  ggAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGtttgg                             >  2:6385580/1‑90 (MQ=255)                                                   gAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGtttggt                            <  1:5372490/93‑5 (MQ=255)                                                   gAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGtttggt                            <  2:5650687/93‑5 (MQ=255)                                                   gAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGtttggt                            <  2:4370028/93‑5 (MQ=255)                                                   gAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGtttggt                            <  2:4097734/93‑5 (MQ=255)                                                   gAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGtttggt                            <  2:6498533/93‑5 (MQ=255)                                                   gAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGtttggt                            <  1:832008/93‑5 (MQ=255)                                                   gAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGtttggt                            <  1:1500944/93‑5 (MQ=255)                                                   gAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGtttggg                            >  2:1014114/1‑89 (MQ=255)                                                         aTGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACggg                      <  2:3791411/93‑1 (MQ=255)                                                         aTGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACggg                      <  1:6058621/93‑1 (MQ=255)                                                         aTGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACggg                      <  1:3213125/93‑1 (MQ=255)                                                          tGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGa                     <  2:1844340/93‑1 (MQ=255)                                                           ggcgggcgGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGAt                    <  2:5203299/93‑1 (MQ=255)                                                           ggcgggcgGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGAt                    <  2:3067848/93‑1 (MQ=255)                                                            gcgggcggC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATg                   >  1:4191617/1‑93 (MQ=255)                                                            gcgggcggC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATg                   >  1:5841435/1‑93 (MQ=255)                                                             cgggcggC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCTAAGA‑‑‑AACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGa                  <  2:912291/93‑1 (MQ=255)                                                             cgggcggC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGa                  <  2:4998234/93‑1 (MQ=255)                                                             cgggcggC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGa                  >  1:2192480/1‑93 (MQ=255)                                                             cgggcggC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGa                  <  1:31479/93‑1 (MQ=255)                                                              gggcggC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGaa                 <  1:47385/93‑1 (MQ=255)                                                              gggcggC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGaa                 >  2:806217/1‑93 (MQ=255)                                                              gggcggC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGaa                 <  2:3841035/93‑1 (MQ=255)                                                                gcggc‑gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacg               >  2:274444/1‑93 (MQ=255)                                                                gcggc‑gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacg               >  2:2993890/1‑93 (MQ=255)                                                                 cggc‑gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacga              <  2:3073690/93‑1 (MQ=255)                                                                  ggc‑gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacgac             <  2:2367591/93‑1 (MQ=255)                                                                  ggc‑gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacgac             >  2:5179197/1‑93 (MQ=255)                                                                  ggc‑gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacgac             <  1:5688350/93‑1 (MQ=255)                                                                  ggc‑gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacgac             <  2:1368824/93‑1 (MQ=255)                                                                   gc‑gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacgacg            >  1:2108765/1‑93 (MQ=255)                                                                   gc‑gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacgacg            <  2:1665924/93‑1 (MQ=255)                                                                    c‑gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGc           >  2:777217/1‑93 (MQ=255)                                                                    c‑gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGc           <  1:4782314/93‑1 (MQ=255)                                                                      gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGG‑ATTGCGTTTGGTGTCGGGATGAACGACGcc          >  2:6280598/1‑93 (MQ=255)                                                                      gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGcc          >  2:3784278/1‑93 (MQ=255)                                                                      gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGcc          <  2:3562144/93‑1 (MQ=255)                                                                      gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGcc          >  2:6297100/1‑93 (MQ=255)                                                                      gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGcc          >  2:4869242/1‑93 (MQ=255)                                                                      gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGcc          <  1:4708802/93‑1 (MQ=255)                                                                      gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGcc          >  2:2100640/1‑93 (MQ=255)                                                                      gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGcc          >  1:3137376/1‑93 (MQ=255)                                                                        ttcaaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGa        <  1:5667309/89‑1 (MQ=255)                                                                        ttcaaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGa        <  1:6379746/89‑1 (MQ=255)                                                                          caaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa      <  2:5979161/91‑1 (MQ=255)                                                                          caaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa      <  2:3475704/91‑1 (MQ=255)                                                                          caaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa      <  1:2934883/91‑1 (MQ=255)                                                                          caaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa      <  2:1507336/91‑1 (MQ=255)                                                                           aaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt     <  2:3991366/92‑1 (MQ=255)                                                                           aaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt     <  2:5637763/92‑1 (MQ=255)                                                                            aaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg    >  1:2205579/1‑93 (MQ=255)                                                                            aaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg    <  2:6010772/93‑1 (MQ=255)                                                                            aaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg    >  1:4506931/1‑93 (MQ=255)                                                                            aaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg    >  1:721326/1‑93 (MQ=255)                                                                             aaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc   <  2:5981706/93‑1 (MQ=255)                                                                             aaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc   <  1:6289377/93‑1 (MQ=255)                                                                             aaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc   <  1:3895288/93‑1 (MQ=255)                                                                              aGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt  >  2:2939531/1‑93 (MQ=255)                                                                              aGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt  >  2:6691263/1‑93 (MQ=255)                                                                              aGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt  >  1:3236866/1‑93 (MQ=255)                                                                              aGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt  >  2:2767946/1‑93 (MQ=255)                                                                              aGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt  >  1:296548/1‑93 (MQ=255)                                                                              aGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt  <  2:3264646/93‑1 (MQ=255)                                                                              aGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt  >  2:6020789/1‑93 (MQ=255)                                                                              aGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGAAGCCGAAATGcg  >  1:1083384/1‑92 (MQ=255)                                                                                               |                                                                                CTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGC‑‑‑G‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATT‑G‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCT  >  NC_000913/4008300‑4008457

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑