BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,997,285	(T)_6→7	coding (629/756 nt)	b2865 ←	putative lipoprotein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,997,279	1	.	T	98.8%	892.0 / 1.3	241	coding (635/756 nt)	b2865	putative lipoprotein
Reads supporting (aligned to +/- strand): ref base . (1/2); new base T (109/129); total (110/131)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 273 total aligned reads displayed.

GCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑TTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTT  >  NC_000913/2997187‑2997366

gcAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑a                                                                                          >  1:2024947/1‑93 (MQ=255)

 cAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑t                                                                                        <  1:3283616/93‑1 (MQ=255)

  aaGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑tt                                                                                       <  1:13715/93‑1 (MQ=255)

   aGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑ttt                                                                                      >  1:4153557/1‑93 (MQ=255)

   aGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑ttt                                                                                      >  2:2394653/1‑93 (MQ=255)

    gTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑tttt                                                                                     >  2:721907/1‑93 (MQ=255)

      aaCGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑tttttt                                                                                   >  1:5347061/1‑93 (MQ=255)

      aaCGAAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGGG‑A‑tttttt                                                                                   >  1:3731285/1‑93 (MQ=255)

       aCGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑ttttttt                                                                                  <  2:1448718/93‑2 (MQ=255)

       aCGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑ttttttt                                                                                  <  2:4927157/93‑2 (MQ=255)

         gTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑tttttttgc                                                                                <  2:3430121/93‑4 (MQ=255)

          tAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑tttttttgcc                                                                               <  1:2612795/93‑5 (MQ=255)

            gCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCa                                                                              >  2:3473503/1‑93 (MQ=255)

              ggATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGc                                                                            <  2:3207707/93‑1 (MQ=255)

                aTCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCt                                                                          <  1:1898153/93‑1 (MQ=255)

                aTCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCt                                                                          >  1:4881931/1‑93 (MQ=255)

                aTCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCt                                                                          <  2:5885834/93‑1 (MQ=255)

                   aaTTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCa                                                                       <  1:2085641/93‑1 (MQ=255)

                   aaTTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCa                                                                       <  1:2901341/93‑1 (MQ=255)

                   aaTTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCa                                                                       <  1:3801201/93‑1 (MQ=255)

                    aTTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCAc                                                                      <  2:1834472/93‑1 (MQ=255)

                     ttGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACg                                                                     >  2:2914932/1‑93 (MQ=255)

                      tGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGc                                                                    <  1:3477429/93‑1 (MQ=255)

                       gCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCt                                                                   >  2:4501547/1‑93 (MQ=255)

                        ccGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCtt                                                                  <  2:2251291/93‑1 (MQ=255)

                        ccGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCtt                                                                  <  2:3946433/93‑1 (MQ=255)

                        ccGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCtt                                                                  >  1:5593159/1‑93 (MQ=255)

                         cGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCttt                                                                 <  2:5591735/93‑1 (MQ=255)

                          gTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTg                                                                >  1:6059772/1‑93 (MQ=255)

                            tGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGcc                                                              >  1:3649973/1‑93 (MQ=255)

                            tGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGcc                                                              <  2:5517131/93‑1 (MQ=255)

                               cgggTAACGAATCAGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCat                                                           <  1:5891138/91‑1 (MQ=255)

                               aCGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCat                                                           <  2:5797433/93‑1 (MQ=255)

                                cGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCatt                                                          <  2:4730414/93‑1 (MQ=255)

                                 ggTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCTCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCatta                                                         <  2:4326839/93‑1 (MQ=255)

                                   tAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCattatt                                                       <  2:1897525/93‑1 (MQ=255)

                                   tAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCattatt                                                       >  2:4991854/1‑93 (MQ=255)

                                    aaCGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTAttt                                                      >  1:220746/1‑93 (MQ=255)

                                      cGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTAc                                                    <  2:2842184/93‑1 (MQ=255)

                                        aaTCTGGAAATGCGGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCa                                                  <  2:6299148/93‑1 (MQ=255)

                                        aaTCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCa                                                  <  2:5284653/93‑1 (MQ=255)

                                         aTCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAg                                                 >  2:1605352/1‑93 (MQ=255)

                                          tCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGc                                                >  2:4525714/1‑93 (MQ=255)

                                           cTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCa                                               <  1:517245/93‑1 (MQ=255)

                                             ggAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATc                                             >  2:372054/1‑93 (MQ=255)

                                               aaaTGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCgt                                           >  2:2765790/1‑93 (MQ=255)

                                               aaaTGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCgt                                           >  2:6715950/1‑93 (MQ=255)

                                                aaTGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCgtg                                          >  2:4430835/1‑93 (MQ=255)

                                                aaTGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCgtg                                          <  1:572597/93‑1 (MQ=255)

                                                 aTGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCgtgt                                         >  2:4283322/1‑93 (MQ=255)

                                                  tGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTc                                        <  1:4605983/93‑1 (MQ=255)

                                                    cAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCAt                                      <  1:5067885/93‑1 (MQ=255)

                                                    cAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCAt                                      <  1:937261/93‑1 (MQ=255)

                                                    cAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCAt                                      <  1:2380736/93‑1 (MQ=255)

                                                     aGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCAtt                                     <  1:1554427/93‑1 (MQ=255)

                                                     aGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCAtt                                     >  2:2214311/1‑93 (MQ=255)

                                                      ggCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTa                                    <  1:6531206/93‑1 (MQ=255)

                                                       gCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTAt                                   <  1:54811/93‑1 (MQ=255)

                                                       gCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTAt                                   <  2:2425149/93‑1 (MQ=255)

                                                        cGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATg                                  <  2:2000092/93‑1 (MQ=255)

                                                         gAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATgg                                 <  1:2339807/93‑1 (MQ=255)

                                                         gAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATgg                                 <  2:3944657/93‑1 (MQ=255)

                                                         gAACAGATGCCGCATCAGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATgg                                 <  2:4249787/93‑1 (MQ=255)

                                                          aaCAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATggg                                >  1:368114/1‑93 (MQ=255)

                                                           aCAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGc                               >  2:6495946/1‑93 (MQ=255)

                                                           aCAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGc                               <  1:863789/93‑1 (MQ=255)

                                                           aCAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGc                               >  1:6003083/1‑93 (MQ=255)

                                                            cAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCg                              >  2:461180/1‑93 (MQ=255)

                                                              gATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTa                            >  1:2561042/1‑93 (MQ=255)

                                                              gATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTa                            >  2:6623655/1‑93 (MQ=255)

                                                              gATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTa                            >  1:4359995/1‑93 (MQ=255)

                                                                tGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAg                          >  1:6445024/1‑93 (MQ=255)

                                                                tGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAg                          >  1:5632888/1‑93 (MQ=255)

                                                                 gCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTGTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGc                         <  2:3305901/93‑1 (MQ=255)

                                                                  ccGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCGCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGcc                        >  1:102756/1‑93 (MQ=255)

                                                                  ccGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGcc                        <  1:1749594/93‑1 (MQ=255)

                                                                  ccGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGcc                        <  2:5100877/93‑1 (MQ=255)

                                                                  ccGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGcc                        <  2:6057377/93‑1 (MQ=255)

                                                                   cGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCg                       <  1:4276785/93‑1 (MQ=255)

                                                                   cGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCg                       <  1:4025309/93‑1 (MQ=255)

                                                                    gCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgt                      >  2:3059302/1‑93 (MQ=255)

                                                                      gtCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaa                    <  1:758318/92‑1 (MQ=255)

                                                                      ctCCGTGATCCCCATAGTGGCGCT‑TTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaa                    <  1:2966925/92‑1 (MQ=255)

                                                                      aTCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaa                    >  1:2843218/1‑93 (MQ=255)

                                                                      aTCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaa                    <  1:3029192/93‑1 (MQ=255)

                                                                       tCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaat                   <  1:4053803/93‑1 (MQ=255)

                                                                       gccGTGCTCCCCATAGTGGCA‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaat                   <  1:2307446/92‑1 (MQ=255)

                                                                           tGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaatgtaa               <  2:1624536/93‑1 (MQ=255)

                                                                              tCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCt            >  1:1043490/1‑93 (MQ=255)

                                                                              tCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCt            <  1:6571518/93‑1 (MQ=255)

                                                                                cccATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTc          >  2:5972859/1‑93 (MQ=255)

                                                                                 ccATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCa         >  1:210911/1‑93 (MQ=255)

                                                                                  cATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCAc        >  1:3857981/1‑93 (MQ=255)

                                                                                   aTAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACt       <  1:2641404/93‑1 (MQ=255)

                                                                                      gTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACtgtg    <  1:4501547/93‑1 (MQ=255)

                                                                                      gTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACtgtg    >  2:2974178/1‑93 (MQ=255)

                                                                                       tGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTgtgt   >  1:6255937/1‑93 (MQ=255)

                                                                                       tGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTgtgt   <  1:2696583/93‑1 (MQ=255)

                                                                                       tGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTgtgt   <  2:4050984/93‑1 (MQ=255)

                                                                                        ggCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGtt  <  2:117592/93‑1 (MQ=255)

GCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑TTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTT  >  NC_000913/2997187‑2997366

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`