New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 395825790 (0.340)9 (0.040)
+ACC		 9/178 25.0 9.4% intergenic (‑826/‑35) ppiC/rep peptidyl‑prolyl cis‑trans isomerase C/rep helicase
?NC_000913 3958258 = 90 (0.340)intergenic (‑827/‑34) ppiC/rep peptidyl‑prolyl cis‑trans isomerase C/rep helicase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3958190‑3958257
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCCTCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCC  >  NC_000913/3958258‑3958342
                                                                    |||                                                                                     
TTTAAACATCCGCCGCCAACCGGTTAGCGGGTTTCCCGCGGTCACATTCAAATGCGATTCTGCTACAAACC‑CCCCCCCCCGTTCGAAGATTGA                                                                <  2:5681889/93‑1
   tAACATCCGCCGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAAAGCGATTCTTCTACAAACCCCCCCCCCCCGTTCGAAGATTGAGC                                                              <  2:6550670/92‑1
             cGCCAACCGGTTAGCGGCTTTCACGCGGGTCCATTCAAATGCGATTCTTCCACAAACCCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTA                                                    <  2:1023570/92‑1
                    CGGTTAGCGGCTTTCACGCGGTCACATTCAAATGCGGTTTTTCTTCAAACCCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCT                                             <  2:5768874/93‑1
                              CTTACCCGCGGTTCCATTCAAAAGCGAATCTGCCACAAACCCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGC                                   <  2:624763/93‑1
                                               tccAATGCCATTCTTCTACAAACCCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGA                  <  1:5482268/90‑1
                                                     GCGATTCTCCTA‑AAACCCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTT           <  1:3148457/93‑1
                                                          TCTGGTACAAACCCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCG       <  2:4284054/93‑1
                                                               ttCAAACCCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCC  <  2:6731057/91‑1
                                                                    |||                                                                                     
TTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3958190‑3958257
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCCTCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCC  >  NC_000913/3958258‑3958342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.