| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 279335 | NA (NA) | 296 (1.130) | 127/184 | 0.3 | 98.0% | coding (252/339 nt) | b4505 | hypothetical protein |
| ? | NC_000913 | 370982 = | 6 (0.020) | coding (535/882 nt) | mhpC | 2‑hydroxy‑6‑ketonona‑2,4‑dienedioic acid hydrolase | |||||
Only 100 of 538 total aligned reads displayed.
GCATGAGTTTGTTTACGCCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCGCGCCGCGATCACCTGGAA > NC_000913/370890‑371074 | tcagctaaacaacagaccgagaaagacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaa < 2:1659110‑M2/1‑1 (MQ=255)gcATGAGTTTGTTTACGCCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCtgatga > 1:1412718/1‑93 (MQ=255) cagctaaacaacagaccgagaaagacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaAt > 1:5953207‑M2/92‑93 (MQ=255) cagctaaacaacagaccgagaaagacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaAt < 2:674562‑M2/2‑1 (MQ=255) cATGAGTTTGTTTACGCCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTgatgat > 2:2491839/1‑93 (MQ=255) aTGAGTTTGTTTACGCCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATt > 2:1776044‑M2/1‑92 (MQ=255) aTGAGTTTGTTTACGCCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATt < 1:4732838‑M2/93‑2 (MQ=255) gctaaacaacagaccgagaaagacactgaagttcaaaacaccgaaagggataattgaaaggggtgttgcattgacagattgaatctacaATgg > 1:5352081‑M2/90‑93 (MQ=255) gctaaacaacagaccgagaaagacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATgg < 1:5231185‑M2/4‑1 (MQ=255) gAGTTTGTTTACGCCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGACGACTATCGAAAACCTGAAGCTGATGATtgt < 2:1471962‑M2/93‑4 (MQ=255) aacaacagaccgagaaagacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGatat > 2:2614687‑M2/86‑93 (MQ=255) aacaacagaccgagaaagacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGatat < 1:2871861‑M2/8‑1 (MQ=255) acaacagaccgagaaagacgctgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATc > 1:6475994‑M2/85‑93 (MQ=255) acaacagaccgagaaagacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATc < 1:3675647‑M2/9‑1 (MQ=255) caacagaccgagaaagacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCt < 2:326166‑M2/10‑1 (MQ=255) gtttACGCCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattc > 2:2104619‑M2/1‑84 (MQ=255) gtttACGCCGATGCCAACCGAAGGGATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGCAAACCTGAAGCTGATGATtgtagattc < 1:6321048‑M2/93‑10 (MQ=255) acagaccgagaaagacactgaagttcaaaacaacgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTc > 1:4784602‑M2/82‑93 (MQ=255) cagaccgagaaagacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCg < 2:3469944‑M2/13‑1 (MQ=255) aCGCCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaatt > 1:2611947‑M2/1‑80 (MQ=255) accgagaaagacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGttt < 1:3524692‑M2/16‑1 (MQ=255) ccGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggt > 1:2148171‑M2/1‑77 (MQ=255) ccGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggt < 1:4553481‑M2/93‑17 (MQ=255) cGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAGCCTGAAGCTGATGATtgtagattcaattggtc > 1:2563795‑M2/1‑76 (MQ=255) cGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggta < 1:235469‑M2/93‑18 (MQ=255) gATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtca < 1:3253955‑M2/93‑19 (MQ=255) gATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtca < 2:302490‑M2/93‑19 (MQ=255) agaaagacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGa > 2:4955117‑M2/74‑93 (MQ=255) aTGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaa < 2:6097038‑M2/93‑20 (MQ=255) tGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaac < 2:1139079‑M2/93‑21 (MQ=255) agacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATAcc > 2:4601877‑M2/70‑93 (MQ=255) agacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATAcc > 2:904122‑M2/70‑93 (MQ=255) gacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCa < 1:6301488‑M2/25‑1 (MQ=255) gacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCa < 2:4263735‑M2/25‑1 (MQ=255) acactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAg < 1:2235442‑M2/26‑1 (MQ=255) ccGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaaca > 1:3793484‑M2/1‑67 (MQ=255) actgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCg < 1:4345173‑M2/28‑1 (MQ=255) ctgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGa < 2:3846473‑M2/29‑1 (MQ=255) gAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagt < 2:5394396‑M2/93‑29 (MQ=255) gaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGAtt < 1:515902‑M2/31‑1 (MQ=255) aagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGAttt < 2:5293008‑M2/32‑1 (MQ=255) agttcaaaacaccgaaagagataattgaaaggggtgttgcattggcagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTg > 1:5258523‑M2/61‑93 (MQ=255) gttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGa > 2:4879725‑M2/60‑93 (MQ=255) ggattAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggttaacgcaacagttatg < 1:3906027‑M2/91‑33 (MQ=255) ttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctaccATGGATATCTTCGTTTTTGATACCAGCGATTTGAc > 1:3150331‑M2/59‑93 (MQ=255) ttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGAc < 2:5099438‑M2/35‑1 (MQ=255) tcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGAcc > 2:10899‑M2/58‑93 (MQ=255) aaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGAc > 1:4249851‑M2/55‑93 (MQ=255) aaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGAc > 2:816787‑M2/55‑93 (MQ=255) gCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaac < 2:1310452‑M2/93‑40 (MQ=255) acaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGc < 1:4659708‑M2/41‑1 (MQ=255) accgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGccc < 1:919566‑M2/43‑1 (MQ=255) accgaaagagataagtgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGccc < 1:4394392‑M2/43‑1 (MQ=255) ccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCt < 2:4326919‑M2/44‑1 (MQ=255) aCTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatg < 2:2940063‑M2/93‑43 (MQ=255) aCTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGACtgtagattcaattggtcaacgcaacagttatgtgaaaacatg > 2:3562641‑M2/1‑51 (MQ=255) gaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCGGCGATTTGACCGACGCCCTGt < 1:4950666‑M2/46‑1 (MQ=255) gaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGt < 2:5625525‑M2/46‑1 (MQ=255) aagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGttt > 2:3776247‑M2/46‑93 (MQ=255) agagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTg > 2:3186580‑M2/45‑93 (MQ=255) aGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcg > 2:4142423‑M2/1‑43 (MQ=255) cTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcgga > 2:2181314‑M2/1‑41 (MQ=255) aattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAgcgc < 2:1576928‑M2/55‑1 (MQ=255) tATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggt < 2:6193175‑M2/93‑56 (MQ=255) aTCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtgaacgcaacagttatgtgaaaacatggggttgcggaggtt < 2:3932821‑M2/93‑57 (MQ=255) aTCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgataacatggcgttgcggtggtt < 1:180627‑M2/93‑57 (MQ=255) tCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttt < 1:1258300‑M2/93‑58 (MQ=255) gaaaggtgtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCt < 1:5793486‑M2/59‑1 (MQ=255) gaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCt < 1:1714064‑M2/59‑1 (MQ=255) cGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggtttt > 2:4420518‑M2/1‑35 (MQ=255) gTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttt < 1:2773616‑M2/93‑60 (MQ=255) aggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGaa > 2:6002430‑M2/32‑93 (MQ=255) gggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGaata > 1:3742531‑M2/30‑93 (MQ=255) cGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatg < 1:2703987‑M2/93‑66 (MQ=255) aCTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgag > 1:774433‑M2/1‑26 (MQ=255) tATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagac > 1:3029897‑M2/1‑24 (MQ=255) gcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCt < 2:6660589‑M2/71‑1 (MQ=255) ttgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTc < 1:2500522‑M2/74‑1 (MQ=255) aaaaCCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaaca < 1:4165014‑M2/93‑75 (MQ=255) acagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACAGACGCCCTGTTTGAAGCGCGCCTGAATCATATGCTGTcgcg > 2:1535826‑M2/17‑93 (MQ=255) cagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCgcgc > 2:2748939‑M2/16‑93 (MQ=255) aCCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacattt < 2:3358307‑M2/93‑78 (MQ=255) aCCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacattt < 2:6544443‑M2/93‑78 (MQ=255) aCCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacattt < 1:1946126‑M2/93‑78 (MQ=255) gattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGCAGCGCGCCTGAATAATATGCTGTCGcgccg > 2:5517168‑M2/14‑93 (MQ=255) cTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacatttac < 1:505348‑M2/93‑80 (MQ=255) attgaatctacaATGGATATCTTCGTTTTTGATCCCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCGcgccgc < 1:104736‑M2/81‑1 (MQ=255) tGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacatttaca < 2:6295596‑M2/93‑81 (MQ=255) gaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCGCGCCGCGAt < 2:2390934‑M2/84‑1 (MQ=255) aaGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacatttacagc > 1:383534‑M2/1‑11 (MQ=255) aaGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggagggtttttgaatgagacgaacatttacagc < 2:6381406‑M2/93‑83 (MQ=255) aGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacatttacagca < 1:6082591‑M2/93‑84 (MQ=255) aGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacatttacagca < 2:5755881‑M2/93‑84 (MQ=255) gCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacatttacagcag < 1:1141343‑M2/93‑85 (MQ=255) cTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacatttacagcaga > 2:4066156‑M2/1‑8 (MQ=255) tacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCGCGCCGCGATCACCt < 1:5628702‑M2/89‑1 (MQ=255) atgattgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacatttacagcagagga > 2:4720086‑M2/1‑5 (MQ=255) acaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCGCGCCGCGATCACCTg < 1:6201294‑M2/90‑1 (MQ=255) tgattgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacatttacagcagaggaa > 1:1633957‑M2/1‑4 (MQ=255) gattgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacatttacagcagaggaaa > 1:3407824‑M2/1‑3 (MQ=255) | GCATGAGTTTGTTTACGCCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCGCGCCGCGATCACCTGGAA > NC_000913/370890‑371074 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |