BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,460,900	1	.	C	73.1%	369.6 / 145.2	158	intergenic (+234/‑132)	fadL/b2345	FadL/hypothetical protein
Reads supporting (aligned to +/- strand): ref base . (9/33); new base C (47/67); total (58/100)
Fisher's exact test for biased strand distribution p-value = 2.46e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.54e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 198 total aligned reads displayed.

GTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAA  >  NC_000913/2460808‑2460992

gTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑t                                                                                                  >  1:5874786/1‑93 (MQ=255)

 tATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑c                                                                                               >  2:3529529/1‑93 (MQ=255)

 tATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑c                                                                                               <  2:5469201/93‑1 (MQ=255)

  aTCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑cc                                                                                              <  2:1055784/93‑1 (MQ=255)

   tCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑ccc                                                                                             >  2:2166792/1‑93 (MQ=255)

   tCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑ccc                                                                                             >  1:2529070/1‑93 (MQ=255)

    ccACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑cccc                                                                                            >  2:3638970/1‑93 (MQ=255)

    ccACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑cccc                                                                                            >  2:3050854/1‑93 (MQ=255)

    ccACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑cccc                                                                                            >  2:851521/1‑93 (MQ=255)

     cacaGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑ccccc                                                                                           <  1:3603600/93‑1 (MQ=255)

       caGACAAACCTGAAGGGGAAGGCATATTTTCAGGCGTTCTGCTCGTGCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑ccccccc                                                                                         >  2:1560744/1‑93 (MQ=255)

         gACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑ccccccccc                                                                                       <  2:685631/93‑1 (MQ=255)

         gACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑ccccccccc                                                                                       >  2:6687370/1‑93 (MQ=255)

          aCAAGCCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑cccccccccc                                                                                      <  2:4456163/93‑2 (MQ=255)

          aCAAACCTGAAGGGAAAGGCATTTTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑c‑‑cccccccccc                                                                                      <  2:4423952/93‑2 (MQ=255)

          aCAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑CCCCCCCCCt                                                                                      <  2:6416454/93‑1 (MQ=255)

          aCAAACCGGAAGCGAAAAGAATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAC‑A‑C‑c‑‑cccccccccc                                                                                      <  1:4800887/93‑2 (MQ=255)

           cAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑cccccccccct                                                                                     <  2:2607528/93‑3 (MQ=255)

             aaCCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑cccccccccctgg                                                                                   >  1:4078237/1‑89 (MQ=255)

               ccTTAAGGGAAAGGCAATTTTTCAGGCCTTCTGCCCGTCCCTCCCAAAAAGTTTACCTTTCTTCATTTCCA‑GGATCC‑C‑C‑‑CCCCCCCCCT‑G‑GCt                                                                                <  2:667630/93‑1 (MQ=255)

               ccTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑CCCCCCCCCT‑G‑GCTa                                                                               <  2:3221437/93‑1 (MQ=255)

                  gAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTAtt                                                                             <  2:6218861/93‑1 (MQ=255)

                    aGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATtgt                                                                           <  1:34091/93‑1 (MQ=255)

                    aGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATtgt                                                                           <  1:1582199/93‑1 (MQ=255)

                     gggAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑CCCCCCCCCT‑G‑GCTATTGTgc                                                                         >  1:1082534/1‑93 (MQ=255)

                     gggAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTCCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATtgtg                                                                          <  2:5097530/93‑1 (MQ=255)

                        aaaGGCATATTTTCAGGCTTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑ACC‑C‑‑CCCCCCCCCT‑G‑GCTATTGTgcgc                                                                       <  2:1352552/93‑1 (MQ=255)

                        aaaGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTgcgc                                                                       <  1:1827335/93‑1 (MQ=255)

                        aaaGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑CCCCCCCCCT‑G‑GCTATTGTGCGCt                                                                      <  2:3867127/93‑1 (MQ=255)

                          aGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTc                                                                     >  2:911466/1‑93 (MQ=255)

                          aGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTc                                                                     >  2:3848262/1‑93 (MQ=255)

                           ggCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCa                                                                    >  2:1749830/1‑93 (MQ=255)

                           ggCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCa                                                                    <  2:6469066/93‑1 (MQ=255)

                             cATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATa                                                                  >  1:5208490/1‑93 (MQ=255)

                              atatTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑CCTATTGTGCGCTCCTac                                                                 >  2:3947111/1‑93 (MQ=255)

                               tatTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTcacaca                                                                >  1:683124/1‑93 (MQ=255)

                               tatTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCTTacc                                                                >  2:5228618/1‑92 (MQ=255)

                                atTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑ACC‑C‑‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATacac                                                               <  2:5544430/93‑1 (MQ=255)

                                   ttCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCa                                                            <  2:1433877/93‑1 (MQ=255)

                                     cAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCaaa                                                          <  1:1374357/93‑1 (MQ=255)

                                     cAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCaaa                                                          <  1:5204234/93‑1 (MQ=255)

                                       ggCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑CCCCCCCCCC‑G‑GCTATTTTGCGCTCATACACTCAAAATa                                                       >  2:16268/1‑93 (MQ=255)

                                           ttCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAg                                                    >  1:5410428/1‑93 (MQ=255)

                                            tCTGCTTGTTCTTCTCAAAGGGTTTACTTTTCTGCATTTCCA‑GGATCC‑C‑C‑‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGa                                                   <  1:878272/93‑1 (MQ=255)

                                            tCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑C‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGa                                                   <  1:1197411/93‑1 (MQ=255)

                                              tGCTCGTCCTTCTCAAAGAGTTTCCTTTTCTGCATTTCCA‑GGAT‑T‑CGC‑‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATa                                                 <  2:6107592/93‑1 (MQ=255)

                                              tGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATa                                                 <  1:175298/93‑1 (MQ=255)

                                              tGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCCATTGTGCGATCATACACTCAAATTAAAGATa                                                 >  2:5375262/1‑93 (MQ=255)

                                               gCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAg                                                >  1:5460853/1‑93 (MQ=255)

                                               gCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAg                                                <  2:4120689/93‑1 (MQ=255)

                                               gCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAg                                                <  1:1255787/93‑1 (MQ=255)

                                                   gTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGttt                                            >  2:4888451/1‑92 (MQ=255)

                                                      cTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCtaa                                         <  2:2828632/93‑1 (MQ=255)

                                                      cTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑CCCCCCCCCTCG‑GCTATTGTGCGCTCTTACACTCAAATTAAAGACAGGTTCcaa                                         >  1:4377579/1‑93 (MQ=255)

                                                       ttCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCtaaa                                        >  2:1493426/1‑93 (MQ=255)

                                                         ctcAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCtaaata                                      <  2:2342398/93‑1 (MQ=255)

                                                          tcAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TCCCCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCtaaata                                      <  1:6151242/93‑1 (MQ=255)

                                                          tcAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAAATAGGTTGtaaataa                                     >  1:973551/1‑93 (MQ=255)

                                                          tcAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑CCCCCCCCCT‑G‑GGCATTGTGCGCTCATACACTCAAATTAAAGATAAGTTCtaaataaa                                    >  2:4816449/1‑93 (MQ=255)

                                                           cAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCtaaataaa                                    <  2:4509276/93‑1 (MQ=255)

                                                            aaaGAGTTTTCTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTaaataaat                                   <  2:4773092/93‑1 (MQ=255)

                                                            aaaGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑GTGCT‑TTTCGCGGTCATGCACCCAATCTATAGTTATCTTCTaaataaat                                   >  1:2612056/1‑93 (MQ=255)

                                                            aaaGAGTTTAATTTTCTGCATTTCCA‑GGAT‑A‑C‑TA‑CCCCCACCTT‑G‑GCTATTGACCGCTCACAGAGTCAAATTAAAGATAGGTTCTaaataaat                                   >  1:3313739/1‑93 (MQ=255)

                                                             aatagTTTACTTTTCTGCATTTCCA‑GGAT‑ACC‑C‑‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATg                                  <  1:2698933/90‑1 (MQ=255)

                                                             aaGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTCTTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTaaaaaaata                                  >  2:6265393/1‑92 (MQ=255)

                                                              agagTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAg                                <  2:5826120/93‑1 (MQ=255)

                                                               gagTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACCCTCAAATTAAAGATAGGTTCTAAATAAATGAg                                >  2:1946559/1‑93 (MQ=255)

                                                               gagTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAg                                <  1:1221853/93‑1 (MQ=255)

                                                               aagTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAg                                <  1:315770/92‑1 (MQ=255)

                                                                agTTTCCTTTT‑TGGATTTCCAGGGAT‑C‑C‑C‑‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCg                              <  2:5614708/93‑1 (MQ=255)

                                                                 gTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCg                              >  2:2876722/1‑93 (MQ=255)

                                                                 attcaCTTTTATCCATTCCCA‑GATT‑C‑C‑C‑‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGt                             <  1:925599/89‑1 (MQ=255)

                                                                   ttACTTTTCTTCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGtt                            <  1:109367/93‑1 (MQ=255)

                                                                    tccTTTTCGGCATTTTCA‑GGCT‑ACC‑C‑‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGttt                           <  1:5713411/91‑1 (MQ=255)

                                                                    tACTTTTCTGCATTTCCA‑GGAT‑ACC‑C‑‑CCCCCCCCCT‑G‑GCTATTGTGGGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGttt                           <  2:4280003/93‑1 (MQ=255)

                                                                    tACTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGttt                           >  2:968085/1‑93 (MQ=255)

                                                                     tcTTTTTTGCATTTCCA‑GGATCC‑C‑C‑‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGtttt                          <  1:5375262/92‑1 (MQ=255)

                                                                     tcTTTTCTGCATTTCCA‑GGATCC‑C‑C‑‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGtttt                          <  1:6317011/92‑1 (MQ=255)

                                                                     aCTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGtttt                          >  1:1996719/1‑93 (MQ=255)

                                                                      cTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGttttt                         <  2:1633495/93‑1 (MQ=255)

                                                                      cTTTTCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGttttt                         <  2:5923825/93‑1 (MQ=255)

                                                                      cTTTTCTGCATTTCCA‑GGAT‑A‑C‑TA‑CCCCCCCCCT‑G‑GGCATTAGGGTCTTCCACACTCAAATTAAAGATTGGTTCTTAATAAATGCACGatttt                         >  2:1799264/1‑93 (MQ=255)

                                                                        tttCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTg                       <  1:4453971/93‑1 (MQ=255)

                                                                         ttCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACGCTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGa                      <  1:6482077/93‑1 (MQ=255)

                                                                          tCTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGAt                     <  2:2530868/93‑1 (MQ=255)

                                                                           cTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATa                    <  2:5307556/93‑1 (MQ=255)

                                                                           cTGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATa                    <  2:6633045/93‑1 (MQ=255)

                                                                            tGCATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAg                   <  1:5595434/93‑1 (MQ=255)

                                                                              cATTTCCA‑GGAT‑ACC‑C‑‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTc                 <  1:4565454/93‑1 (MQ=255)

                                                                              cATTTCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTc                 <  1:3757115/93‑1 (MQ=255)

                                                                                tttCCA‑GGAT‑ACC‑C‑‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTa               <  1:4917688/93‑1 (MQ=255)

                                                                                tttCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTa               <  2:5729004/93‑1 (MQ=255)

                                                                                tttCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTa               <  1:1524550/93‑1 (MQ=255)

                                                                                 ttCCA‑GGAT‑A‑C‑T‑‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTAtt             >  2:4691385/1‑93 (MQ=255)

                                                                                  tCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTAtt             <  1:4008995/93‑1 (MQ=255)

                                                                                  tCCA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTAtt             <  1:6673136/93‑1 (MQ=255)

                                                                                   ccA‑GGAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTTTTGTGGGCTCATACACTCAAATTAAAGAAAGGTTCTAAATAAATTAGCGTTTTTTGATAGTtttttt            >  2:4060647/1‑93 (MQ=255)

                                                                                        gAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCAtt        <  1:2781628/93‑1 (MQ=255)

                                                                                        gAT‑A‑C‑TC‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCAtt        <  1:2281136/93‑1 (MQ=255)

                                                                                         aT‑A‑C‑T‑‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAg      <  1:2125999/93‑1 (MQ=255)

GTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GGAT‑A‑C‑T‑‑CCCCCCCCCT‑G‑GCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAA  >  NC_000913/2460808‑2460992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`