BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,731,386	T→C	V13A (GTA→GCA)	xylH →	XylH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,731,386	0	T	C	100.0%	918.0 / NA	285	V13A (GTA→GCA)	xylH	XylH
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (164/121); total (164/121)

Only 100 of 290 total aligned reads displayed.

TCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGTACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTCT  >  NC_000913/3731296‑3731475

tCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCAc                                                                                         >  2:2445154/1‑93 (MQ=255)

tCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCAc                                                                                         <  2:1427813/93‑1 (MQ=255)

 cATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCAcc                                                                                        <  2:6335942/93‑1 (MQ=255)

  aTAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCg                                                                                       >  2:3164456/1‑93 (MQ=255)

  aTAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCg                                                                                       >  1:1827021/1‑93 (MQ=255)

  aTAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCg                                                                                       >  1:2504988/1‑93 (MQ=255)

   tAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGa                                                                                      >  1:4128995/1‑93 (MQ=255)

   tAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGa                                                                                      >  1:2790459/1‑93 (MQ=255)

   tAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGa                                                                                      <  1:2042812/93‑1 (MQ=255)

     aCCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACa                                                                                    <  2:1513979/93‑1 (MQ=255)

     aCCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACa                                                                                    >  2:5526219/1‑93 (MQ=255)

     aCCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACa                                                                                    >  2:5692970/1‑93 (MQ=255)

       cTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATc                                                                                  >  2:4788484/1‑93 (MQ=255)

       cTGACTCAGGAGCAGGTGATGAAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATc                                                                                  >  1:1933924/1‑93 (MQ=255)

           cTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGt                                                                              <  2:1668687/93‑1 (MQ=255)

            tCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTg                                                                             >  1:3545581/1‑93 (MQ=255)

            tCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTg                                                                             >  2:2789099/1‑93 (MQ=255)

              aGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGc                                                                           <  2:4937468/93‑1 (MQ=255)

               ggAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCt                                                                          <  2:6150722/93‑1 (MQ=255)

               ggAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCt                                                                          <  2:6170560/93‑1 (MQ=255)

                gAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCtt                                                                         >  2:1264077/1‑93 (MQ=255)

                  gCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTtct                                                                       >  1:2905045/1‑93 (MQ=255)

                    aGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTcc                                                                     >  2:6690217/1‑93 (MQ=255)

                    aGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTcc                                                                     <  1:3598803/93‑1 (MQ=255)

                    aGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTcc                                                                     <  2:4579820/93‑1 (MQ=255)

                    aGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTcc                                                                     >  2:4991702/1‑93 (MQ=255)

                    aGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTcc                                                                     >  2:6068985/1‑93 (MQ=255)

                     ggTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCg                                                                    <  2:3815002/93‑1 (MQ=255)

                      gTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCgg                                                                   <  2:3698018/93‑1 (MQ=255)

                        gATGGAAGCCGCATTGAGGAGCGCACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGCCATCCGGTGGCTTCTCCGGGc                                                                 >  2:1066957/1‑93 (MQ=255)

                          tGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTg                                                               >  2:2328893/1‑93 (MQ=255)

                           ggAAGCCGCCTTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGa                                                              >  1:1131670/1‑93 (MQ=255)

                           ggAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGa                                                              >  1:2268274/1‑93 (MQ=255)

                             aaGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGaaa                                                            <  2:6407108/93‑1 (MQ=255)

                              aGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAAt                                                           >  2:1105541/1‑93 (MQ=255)

                               gCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATc                                                          >  1:2360613/1‑93 (MQ=255)

                                ccGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCa                                                         >  1:1366591/1‑93 (MQ=255)

                                  gCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACt                                                       <  2:3037813/93‑1 (MQ=255)

                                    aTTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGa                                                     >  2:5165024/1‑93 (MQ=255)

                                     ttGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGaa                                                    >  2:1620601/1‑93 (MQ=255)

                                     ttGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGaa                                                    >  2:1794660/1‑93 (MQ=255)

                                     ttGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGaa                                                    >  2:6209711/1‑93 (MQ=255)

                                      tGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAAt                                                   <  2:5055827/93‑1 (MQ=255)

                                        aggagCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTTAAATCACTGAAttt                                                 >  1:3834263/1‑93 (MQ=255)

                                        aggagCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAAttt                                                 <  1:3427092/93‑1 (MQ=255)

                                          gagCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGc                                               <  2:5745733/93‑1 (MQ=255)

                                            gCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAg                                             <  2:5956285/93‑1 (MQ=255)

                                               aaCATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTc                                          >  1:5494900/1‑93 (MQ=255)

                                                aCATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCt                                         >  1:5812549/1‑93 (MQ=255)

                                                   tcatGTCGAAAAGCCATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCg                                      >  1:4266387/1‑93 (MQ=255)

                                                   tcatGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCg                                      <  1:4877480/93‑1 (MQ=255)

                                                   tcatGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCg                                      >  2:5246290/1‑93 (MQ=255)

                                                    catGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGt                                     <  1:1693151/93‑1 (MQ=255)

                                                         cGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGtgatga                                >  2:732159/1‑93 (MQ=255)

                                                          gAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTgatgat                               <  1:2395280/93‑1 (MQ=255)

                                                           aaaaGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGAtt                              <  1:5222393/93‑1 (MQ=255)

                                                           aaaaGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGAtt                              >  2:2613620/1‑93 (MQ=255)

                                                           aaaaGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGAtt                              <  1:5710777/93‑1 (MQ=255)

                                                            aaaGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTg                             >  2:1367366/1‑93 (MQ=255)

                                                            aaaGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTg                             >  1:6005984/1‑93 (MQ=255)

                                                             aaGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGc                            >  1:4055668/1‑93 (MQ=255)

                                                             aaGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGc                            <  1:6084969/93‑1 (MQ=255)

                                                              aGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCa                           <  2:3997753/93‑1 (MQ=255)

                                                              aGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCa                           >  1:3240722/1‑93 (MQ=255)

                                                              aGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCa                           <  1:6440067/93‑1 (MQ=255)

                                                               gCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAg                          <  2:264954/93‑1 (MQ=255)

                                                                cAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGc                         <  1:561483/93‑1 (MQ=255)

                                                                    ccGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTatc                     <  2:6598977/93‑1 (MQ=255)

                                                                     cGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTatca                    >  2:2517377/1‑93 (MQ=255)

                                                                      gTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTatcat                   >  2:1980418/1‑93 (MQ=255)

                                                                       tCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTatcatg                  >  1:80161/1‑92 (MQ=255)

                                                                       tCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTatcatc                  >  1:6129297/1‑93 (MQ=255)

                                                                       tCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTatcatc                  <  2:5559930/93‑1 (MQ=255)

                                                                       tCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTatcatc                  >  2:5846192/1‑93 (MQ=255)

                                                                          gAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCa               >  1:4472549/1‑93 (MQ=255)

                                                                           aaGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCaa              <  1:3066858/93‑1 (MQ=255)

                                                                           aaGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATAACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCaa              >  1:1879099/1‑93 (MQ=255)

                                                                            aGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAAt             >  2:895034/1‑93 (MQ=255)

                                                                             gTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAAta            >  2:4408996/1‑92 (MQ=255)

                                                                             gTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATc            >  2:5205496/1‑93 (MQ=255)

                                                                              tGAAATTGGCCGCGCCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCa           <  1:2980725/93‑1 (MQ=255)

                                                                               gAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCAt          <  2:3210455/93‑1 (MQ=255)

                                                                               gAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCAt          <  2:3919031/93‑1 (MQ=255)

                                                                               gAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCAt          <  2:2670907/93‑1 (MQ=255)

                                                                                 aaTTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGc        >  1:3704355/1‑93 (MQ=255)

                                                                                 aaTTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGc        <  1:4643582/93‑1 (MQ=255)

                                                                                 aaTTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAACCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGc        >  1:1795233/1‑93 (MQ=255)

                                                                                  aTTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGTATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCt       <  2:5384078/93‑1 (MQ=255)

                                                                                  aTTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCt       >  2:4866366/1‑93 (MQ=255)

                                                                                  aTTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCt       >  1:5351610/1‑93 (MQ=255)

                                                                                   ttGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTg      <  1:4701590/93‑1 (MQ=255)

                                                                                    tGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGt     <  1:1267255/93‑1 (MQ=255)

                                                                                     ggCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGtt    >  1:4995272/1‑93 (MQ=255)

                                                                                     ggCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGtt    <  1:6655998/93‑1 (MQ=255)

                                                                                     ggCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGtt    <  1:402128/93‑1 (MQ=255)

                                                                                      gCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTc   <  1:3896482/93‑1 (MQ=255)

                                                                                      gCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTc   <  2:2869948/93‑1 (MQ=255)

                                                                                      gCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTc   >  2:3408928/1‑93 (MQ=255)

                                                                                       ccGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTCt  <  2:6304216/93‑1 (MQ=255)

                                                                                       ccGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTCt  <  1:1082448/93‑1 (MQ=255)

TCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGTACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTCT  >  NC_000913/3731296‑3731475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`