BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,776,340	G→A	G439S (GGT→AGT)	lldP →	L‑lactate permease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,776,340	0	G	A	99.3%	1114.2 / ‑5.8	298	G439S (GGT→AGT)	lldP	L‑lactate permease
Reads supporting (aligned to +/- strand): ref base G (0/2); new base A (169/127); total (169/129)
Fisher's exact test for biased strand distribution p-value = 1.87e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 303 total aligned reads displayed.

ATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCGGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCC  >  NC_000913/3776250‑3776429

aTCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGt                                                                                         >  1:78159/1‑93 (MQ=255)

aTCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGt                                                                                         >  2:287404/1‑93 (MQ=255)

aTCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGt                                                                                         >  2:1882223/1‑93 (MQ=255)

 tCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTc                                                                                        >  1:2100153/1‑93 (MQ=255)

   tACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCAt                                                                                      >  2:346228/1‑93 (MQ=255)

   tACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCAt                                                                                      >  2:4382529/1‑93 (MQ=255)

    aCTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATg                                                                                     >  2:2129766/1‑93 (MQ=255)

    aCTCCATCGGTATGGTGCTAGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATg                                                                                     >  1:6570182/1‑93 (MQ=255)

     cTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGc                                                                                    <  1:2331095/93‑1 (MQ=255)

      tCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCa                                                                                   >  1:2540636/1‑93 (MQ=255)

      cccATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCa                                                                                   <  1:1346114/92‑1 (MQ=255)

       ccATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCAt                                                                                  >  1:6498700/1‑93 (MQ=255)

       ccATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCAt                                                                                  <  1:5888020/93‑1 (MQ=255)

        cATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCAtt                                                                                 >  2:697357/1‑93 (MQ=255)

        cATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCAtt                                                                                 >  2:4013377/1‑93 (MQ=255)

        cATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCAtt                                                                                 <  1:5615794/93‑1 (MQ=255)

        cATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCAtt                                                                                 >  2:3416403/1‑93 (MQ=255)

         aTCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTc                                                                                <  1:6186628/93‑1 (MQ=255)

         aTCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTc                                                                                >  2:6577732/1‑93 (MQ=255)

          tCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCa                                                                               <  1:1944755/93‑1 (MQ=255)

             gTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACct                                                                            <  1:6682836/93‑1 (MQ=255)

             gTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACct                                                                            <  2:3903421/93‑1 (MQ=255)

              tATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACctt                                                                           <  1:683988/93‑1 (MQ=255)

               aTGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACcttc                                                                          >  2:3055725/1‑93 (MQ=255)

               aTGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACcttc                                                                          <  2:1926128/93‑1 (MQ=255)

                tGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCGCTGGCGCACACCAGTCATGCATTCACcttct                                                                         <  1:318419/93‑1 (MQ=255)

                tGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACcttct                                                                         <  1:3848582/93‑1 (MQ=255)

                tGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACcttct                                                                         <  2:952777/93‑1 (MQ=255)

                tGGTGCTGGCATTCGCCTTTATTTCGAACTATCCCGCACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACcttct                                                                         <  2:2504007/93‑1 (MQ=255)

                 ggTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACcttctt                                                                        <  2:5785250/93‑1 (MQ=255)

                 ggTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACcttctt                                                                        <  2:4754417/93‑1 (MQ=255)

                 ggTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACcttctt                                                                        >  2:5615608/1‑93 (MQ=255)

                  gTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCttcttc                                                                       <  1:3086472/93‑1 (MQ=255)

                   tGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTtcttct                                                                      <  1:4499451/93‑1 (MQ=255)

                      tGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGc                                                                   >  2:6033286/1‑93 (MQ=255)

                      tGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGc                                                                   >  1:3285184/1‑93 (MQ=255)

                         cATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGt                                                                >  2:3500049/1‑93 (MQ=255)

                         cATTCGCCTTTATTTCGAACTATTCCGGACTGTAATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCAACTTCTTCTCGccct                                                                >  1:3433462/1‑91 (MQ=255)

                          aTTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGtt                                                               <  2:3686001/93‑1 (MQ=255)

                          aTTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGtt                                                               >  2:2094387/1‑93 (MQ=255)

                             cGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCt                                                            >  1:5372161/1‑93 (MQ=255)

                             cGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCt                                                            <  2:5457917/93‑1 (MQ=255)

                              gCCTTTATTTCGACCTATTCCGGACTGTCATCATCACTGGCGCTGGCACTGGCGCACACCGGTCATGCATTCACCTTCTTCTCACCGTTCCTc                                                           <  1:4050081/93‑1 (MQ=255)

                               ccTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCg                                                          >  1:5311481/1‑93 (MQ=255)

                               ccTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCg                                                          >  2:223874/1‑93 (MQ=255)

                               ccTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCg                                                          <  1:270502/93‑1 (MQ=255)

                               ccTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCg                                                          >  1:1633066/1‑93 (MQ=255)

                                 tttATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCggc                                                        >  2:4189625/1‑93 (MQ=255)

                                 tttATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCggc                                                        <  1:2572129/93‑1 (MQ=255)

                                 tttATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCggc                                                        <  1:1867103/93‑1 (MQ=255)

                                  ttATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCggct                                                       <  2:4818904/93‑1 (MQ=255)

                                   tATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCggctg                                                      <  1:2644992/93‑1 (MQ=255)

                                    aTTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCggctgg                                                     >  1:100305/1‑93 (MQ=255)

                                     tttCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCggctggc                                                    >  2:6278274/1‑93 (MQ=255)

                                      ttCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCggctggct                                                   <  1:2901851/93‑1 (MQ=255)

                                         gAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTggg                                                >  2:5254922/1‑93 (MQ=255)

                                         caaCTATTCCGGCCTGTCATCAACACTGGCTCGGGCACTGGCGCACCCCAGTCATGCATTCTCCTTCTTCTCGCCGTTCCTCGGCTGGCTggg                                                <  1:5574685/92‑1 (MQ=255)

                                          aaCTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTgggg                                               >  1:4820639/1‑93 (MQ=255)

                                          aaCTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTgggg                                               >  1:399340/1‑93 (MQ=255)

                                           aCTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTggggg                                              <  2:4905638/93‑1 (MQ=255)

                                           aCTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTggggg                                              <  1:4944757/93‑1 (MQ=255)

                                           aCTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTggggg                                              >  2:4455579/1‑93 (MQ=255)

                                           aCTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTggggg                                              >  2:3308497/1‑93 (MQ=255)

                                           aCTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTggggg                                              <  1:905132/93‑1 (MQ=255)

                                           aCTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTggggg                                              >  2:4342100/1‑93 (MQ=255)

                                            cTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGt                                             >  2:5044187/1‑93 (MQ=255)

                                              atcccGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACGCCAGTCATGCATTCACCTTCTTCTCGCCGTTCCGCGGCTGGCTGGGGGTAt                                           <  1:4849632/90‑1 (MQ=255)

                                              aTTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTAt                                           <  1:300522/93‑1 (MQ=255)

                                              aTTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGGAt                                           >  2:5949688/1‑93 (MQ=255)

                                               ttCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTAtt                                          >  2:3719031/1‑93 (MQ=255)

                                                  cGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCt                                       <  1:3470344/93‑1 (MQ=255)

                                                     aCTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGAc                                    >  2:579075/1‑93 (MQ=255)

                                                      cTGTCATCAACACTGGCGCTGGCACTGGCGCGCACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGAcc                                   >  2:5180649/1‑93 (MQ=255)

                                                      cTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGAcc                                   <  2:1688872/93‑1 (MQ=255)

                                                       tGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCg                                  <  2:3164845/93‑1 (MQ=255)

                                                        gTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCgg                                 >  1:4326732/1‑93 (MQ=255)

                                                         tcatcaACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCggg                                >  1:3547467/1‑93 (MQ=255)

                                                          catcaACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGt                               >  1:1410249/1‑93 (MQ=255)

                                                            tcaACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCCGGTCg                             >  1:4231832/1‑93 (MQ=255)

                                                             caACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCgg                            <  2:2361843/93‑1 (MQ=255)

                                                             caACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCgg                            >  1:5164812/1‑93 (MQ=255)

                                                             caACACTGCCGCTGGCCCT‑GCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGa                           <  2:1216229/93‑1 (MQ=37)

                                                              agctcTGGCGCTGGCACTGGCGCACGCCAGTCATGCATTCGCCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGa                           <  1:4529037/89‑1 (MQ=37)

                                                              aaCACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGa                           >  2:3532938/1‑93 (MQ=255)

                                                                  cTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATAcc                       <  2:4640893/93‑1 (MQ=255)

                                                                   tGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCt                      >  1:1069595/1‑93 (MQ=255)

                                                                     gcgcTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCa                    <  2:5981596/93‑1 (MQ=255)

                                                                       gcTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATc                  <  2:1094817/93‑1 (MQ=255)

                                                                        cTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCt                 <  1:6091446/93‑1 (MQ=255)

                                                                          ggCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTaa               >  2:6414472/1‑93 (MQ=255)

                                                                           gCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAAc              >  2:3113163/1‑93 (MQ=255)

                                                                                ggCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCt         <  2:3837349/93‑1 (MQ=255)

                                                                                ggCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCt         <  1:4692384/93‑1 (MQ=255)

                                                                                 gcgcACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTg        >  2:1508848/1‑93 (MQ=255)

                                                                                  cgcACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGt       <  1:5771984/93‑1 (MQ=255)

                                                                                   gcACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGtt      <  1:120043/93‑1 (MQ=255)

                                                                                    caccCCAGTCATGCATTCCCCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTc     <  1:1262036/93‑1 (MQ=255)

                                                                                    cacaCCGGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTc     <  1:1698504/93‑1 (MQ=255)

                                                                                     acacCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTcg    >  2:822261/1‑93 (MQ=255)

                                                                                       acCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTcgcc  >  1:988087/1‑93 (MQ=255)

ATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCGGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCC  >  NC_000913/3776250‑3776429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`