Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 459,323 T→C G404G (GGT→GGC lon → ATP‑dependent protease La

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913459,3230TC99.6% 729.4 / NA 224G404G (GGT→GGClonATP‑dependent protease La
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (107/116);  minor base G (1/0);  total (108/116)
Fisher's exact test for biased strand distribution p-value = 4.82e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 227 total aligned reads displayed.

GCGTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGG  >  NC_000913/459233‑459412
                                                                                          |                                                                                         
gCGTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGACATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCaa                                                                                         >  2:140316/1‑93 (MQ=255)
gCGTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCaa                                                                                         <  1:3302868/93‑1 (MQ=255)
 cGTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCaaa                                                                                        >  2:4039074/1‑93 (MQ=255)
   tAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACt                                                                                      >  1:1065535/1‑93 (MQ=255)
   tAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACt                                                                                      >  1:4400684/1‑93 (MQ=255)
   tAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACt                                                                                      >  1:5490449/1‑93 (MQ=255)
      atatGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGAt                                                                                   <  1:1207214/93‑1 (MQ=255)
         tGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCa                                                                                >  1:3487061/1‑93 (MQ=255)
           tCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGa                                                                              >  1:2570924/1‑93 (MQ=255)
           tCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGa                                                                              >  1:2622971/1‑93 (MQ=255)
           tCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGa                                                                              >  2:5366290/1‑93 (MQ=255)
           tCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGa                                                                              <  2:5932396/93‑1 (MQ=255)
             cGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGaaa                                                                            >  2:4743826/1‑93 (MQ=255)
              gTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTAACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGacaa                                                                           >  1:3557086/1‑93 (MQ=255)
               tATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAAt                                                                          <  2:1222681/93‑1 (MQ=255)
                 tGGCGCTGGGCGGCGTGCGTGATGTAGCGGCAGTCCGTGGTCCCCGCCGTCCTTACATCGGTTCTTTGCCGGGCATACTGATCCAGAACATgg                                                                        <  1:6724120/93‑1 (MQ=255)
                 tGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATgg                                                                        <  2:2121109/93‑1 (MQ=255)
                 tGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATgg                                                                        <  2:1317466/93‑1 (MQ=255)
                 tGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATgg                                                                        <  1:266344/93‑1 (MQ=255)
                   gcgcTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCg                                                                      >  2:722385/1‑93 (MQ=255)
                   gcgcGGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCg                                                                      <  1:5411843/93‑1 (MQ=255)
                     gcTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGaa                                                                    >  2:4329690/1‑93 (MQ=255)
                      cTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGaaa                                                                   >  1:4126060/1‑93 (MQ=255)
                       tGGGCGGGGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAg                                                                  <  2:5009232/93‑1 (MQ=255)
                       tGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAg                                                                  <  2:6511072/93‑1 (MQ=255)
                        gggCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGt                                                                 >  1:1013247/1‑93 (MQ=255)
                        gggCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGt                                                                 <  2:4405154/93‑1 (MQ=255)
                        gggCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGt                                                                 <  1:4236940/93‑1 (MQ=255)
                        gggCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGt                                                                 >  2:1982113/1‑93 (MQ=255)
                         ggcggcGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTg                                                                <  1:5224488/93‑1 (MQ=255)
                         ggcggcGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTg                                                                >  1:6577694/1‑93 (MQ=255)
                          gcggcgTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTgg                                                               <  1:4512026/93‑1 (MQ=255)
                            ggcgTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGc                                                             >  2:2234986/1‑93 (MQ=255)
                            ggcgTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGc                                                             <  1:5199335/93‑1 (MQ=255)
                             gcgtgcgtGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCg                                                            >  2:2135059/1‑93 (MQ=255)
                              cgtgcgtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGt                                                           <  1:5948839/93‑1 (MQ=255)
                              cgtgcgtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGt                                                           <  1:2828588/93‑1 (MQ=255)
                               gtgcgtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGCGCGTg                                                          >  2:2085781/1‑93 (MQ=255)
                                  cgtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGaaa                                                       >  1:1887476/1‑93 (MQ=255)
                                  cgtgACGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGaaa                                                       >  1:6084442/1‑93 (MQ=255)
                                   gtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGaaaa                                                      >  2:1246559/1‑93 (MQ=255)
                                     gatgaAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAAc                                                    >  1:764796/1‑93 (MQ=255)
                                      atgaAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAAcc                                                   <  2:3676679/93‑1 (MQ=255)
                                      atgaAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAAcc                                                   <  2:4777037/93‑1 (MQ=255)
                                         aaGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGc                                                <  2:1804382/93‑1 (MQ=255)
                                          aGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCt                                               >  1:1772390/1‑93 (MQ=255)
                                          aGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCt                                               <  2:1554123/93‑1 (MQ=255)
                                           gCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTg                                              <  1:6525683/93‑1 (MQ=255)
                                            cGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGt                                             <  1:5877090/93‑1 (MQ=255)
                                            cGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGt                                             >  1:6511790/1‑93 (MQ=255)
                                              gAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTc                                           <  1:6401139/93‑1 (MQ=255)
                                               aaaTCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTcc                                          <  1:5066035/93‑1 (MQ=255)
                                               aaaTCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTcc                                          <  2:4601159/93‑1 (MQ=255)
                                                aaTCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCt                                         >  2:6264848/1‑93 (MQ=255)
                                                 aTCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTg                                        <  1:5507746/93‑1 (MQ=255)
                                                  tCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGc                                       >  2:659676/1‑93 (MQ=255)
                                                  tCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGc                                       >  2:5486491/1‑93 (MQ=255)
                                                  tCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGc                                       <  2:6084707/93‑1 (MQ=255)
                                                  tCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGc                                       <  1:2115167/93‑1 (MQ=255)
                                                   ccGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCt                                      >  1:3997094/1‑93 (MQ=255)
                                                   ccGTGGTCACCGCCGCACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCt                                      >  1:4659656/1‑93 (MQ=255)
                                                     gTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCg                                    >  2:4122720/1‑93 (MQ=255)
                                                      tGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGa                                   >  2:5136468/1‑93 (MQ=255)
                                                       ggTCACCGCCGTACTTACATCGGTTCTATGCCGGGGAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGAt                                  >  1:5774557/1‑93 (MQ=255)
                                                        gTCTCCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATg                                 <  1:2421558/93‑1 (MQ=255)
                                                        gTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATg                                 >  2:2942667/1‑93 (MQ=255)
                                                         tCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATga                                <  2:5040937/93‑1 (MQ=255)
                                                         tCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATga                                <  1:4903451/93‑1 (MQ=255)
                                                         tCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATga                                <  2:4527739/93‑1 (MQ=255)
                                                         tCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATga                                >  2:3750167/1‑93 (MQ=255)
                                                         tCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATga                                <  1:4812238/93‑1 (MQ=255)
                                                           aCCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATgaga                              >  2:2749777/1‑93 (MQ=255)
                                                           aCCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATgaga                              <  1:5105304/93‑1 (MQ=255)
                                                            ccgccgTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGAt                             <  2:4156322/93‑1 (MQ=255)
                                                            ccgccgTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGAt                             <  2:6151741/93‑1 (MQ=255)
                                                            ccgccgTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGAt                             <  1:2175383/93‑1 (MQ=255)
                                                              gccgTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCg                           >  1:3743403/1‑93 (MQ=255)
                                                               ccgTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGa                          <  1:137270/93‑1 (MQ=255)
                                                               ccgTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGa                          >  2:2864385/1‑93 (MQ=255)
                                                               ccgTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGa                          >  2:170652/1‑93 (MQ=255)
                                                                cgTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGAc                         >  2:4369899/1‑93 (MQ=255)
                                                                cgTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGAc                         <  2:3972477/93‑1 (MQ=255)
                                                                cgTACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGAc                         >  1:1802750/1‑93 (MQ=255)
                                                                  tACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACaa                       >  1:362917/1‑93 (MQ=255)
                                                                  tACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACaa                       <  1:2700891/93‑1 (MQ=255)
                                                                  tACTTACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACaa                       >  1:3699613/1‑93 (MQ=255)
                                                                     ttACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAAt                    >  1:3563376/1‑93 (MQ=255)
                                                                     ttACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAAt                    >  2:5701365/1‑93 (MQ=255)
                                                                     ttACATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAAt                    <  2:309275/93‑1 (MQ=255)
                                                                       aCATCGGTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATgc                  >  2:3509882/1‑92 (MQ=255)
                                                                             gTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTg            >  2:2380164/1‑93 (MQ=255)
                                                                             gTTCTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTg            >  2:2657250/1‑93 (MQ=255)
                                                                               tatATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCTTGCTCGATGAGATCGACAAAATGTCTTCTGAc          <  1:4854325/91‑1 (MQ=255)
                                                                                cTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACa         <  1:3167569/93‑1 (MQ=255)
                                                                                cTATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACa         >  1:947215/1‑93 (MQ=255)
                                                                                 tATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACAt        >  1:2029789/1‑93 (MQ=255)
                                                                                 tATGCCGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACAt        >  2:636719/1‑93 (MQ=255)
                                                                                      cGGGCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTg   <  1:3018776/93‑1 (MQ=255)
                                                                                       gggCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTgg  <  2:2285564/93‑1 (MQ=255)
                                                                                       gggCAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTgg  >  2:2459465/1‑93 (MQ=255)
                                                                                          |                                                                                         
GCGTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGG  >  NC_000913/459233‑459412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: