BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,800,657	T→C	E10G (GAG→GGG)	rfaI ←	UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,800,657	0	T	C	100.0%	763.8 / NA	229	E10G (GAG→GGG)	rfaI	UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (132/97); total (132/97)

Only 100 of 233 total aligned reads displayed.

GAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATT  >  NC_000913/3800568‑3800746

gAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAg                                                                                        <  1:1831159/93‑1 (MQ=255)

 aaaGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGt                                                                                       <  2:656682/93‑1 (MQ=255)

  aaGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGtt                                                                                      <  2:851491/93‑1 (MQ=255)

  aaGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGtt                                                                                      <  1:4359398/93‑1 (MQ=255)

   aGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGttt                                                                                     <  1:4145855/93‑1 (MQ=255)

   aGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGttt                                                                                     <  2:3759873/93‑1 (MQ=255)

    gTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTc                                                                                    >  2:5293879/1‑93 (MQ=255)

      ttttGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCt                                                                                  >  1:302075/1‑93 (MQ=255)

       tttGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTg                                                                                 <  1:4056892/93‑1 (MQ=255)

        ttGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTgg                                                                                >  2:1116927/1‑93 (MQ=255)

         tGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGa                                                                               >  1:1510496/1‑93 (MQ=255)

         tGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGa                                                                               <  2:2628879/93‑1 (MQ=255)

           tCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGaaa                                                                             >  2:2109146/1‑93 (MQ=255)

             aGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGaaaaa                                                                           <  2:6516750/93‑1 (MQ=255)

              gTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAac                                                                          <  1:6525605/93‑1 (MQ=255)

                 ccATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACAcc                                                                       <  2:2351319/93‑1 (MQ=255)

                  cATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACct                                                                      >  2:5538339/1‑93 (MQ=255)

                  cATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACct                                                                      >  2:6537615/1‑93 (MQ=255)

                  cATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACct                                                                      >  1:6615845/1‑93 (MQ=255)

                   aTAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACctg                                                                     >  1:1630334/1‑93 (MQ=255)

                    tAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACctgc                                                                    <  2:3256498/93‑1 (MQ=255)

                     aaGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACctgct                                                                   <  2:2960176/93‑1 (MQ=255)

                     aaGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACctgct                                                                   >  1:5274972/1‑93 (MQ=255)

                     aaGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACctgct                                                                   <  1:2528220/93‑1 (MQ=255)

                     aaGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACctgct                                                                   >  1:2045303/1‑93 (MQ=255)

                         gATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCat                                                               >  2:1589582/1‑93 (MQ=255)

                          aTGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCatt                                                              <  1:4403373/93‑1 (MQ=255)

                          aTGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCatt                                                              >  2:4862094/1‑93 (MQ=255)

                          aTGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCatt                                                              <  2:5884029/93‑1 (MQ=255)

                           tGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCatta                                                             <  2:1156190/93‑1 (MQ=255)

                            gTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCattat                                                            >  2:5202591/1‑93 (MQ=255)

                            gTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCattat                                                            <  2:2929187/93‑1 (MQ=255)

                             tCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCattatt                                                           >  1:3543868/1‑93 (MQ=255)

                              ccAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTAttt                                                          <  2:4375008/93‑1 (MQ=255)

                                aGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTtcc                                                        >  2:353917/1‑93 (MQ=255)

                                 gACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTtcct                                                       >  1:1095993/1‑93 (MQ=255)

                                   cAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTtcctcc                                                     <  1:472355/93‑1 (MQ=255)

                                   cAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTtcctcc                                                     >  2:370244/1‑93 (MQ=255)

                                     aaGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCgg                                                   <  1:3061380/93‑1 (MQ=255)

                                     aaGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCgg                                                   >  1:884432/1‑93 (MQ=255)

                                      aGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCggg                                                  >  1:4480256/1‑93 (MQ=255)

                                       gATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGa                                                 <  1:2912839/93‑1 (MQ=255)

                                        aTTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGaa                                                >  2:4077963/1‑93 (MQ=255)

                                           ttCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATa                                             >  2:5733781/1‑93 (MQ=255)

                                            tCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAg                                            >  1:272665/1‑93 (MQ=255)

                                                tttCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGa                                        <  1:3419817/93‑1 (MQ=255)

                                                tttCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGa                                        >  2:2417964/1‑93 (MQ=255)

                                                  tCTACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGcaa                                      >  1:6268764/1‑93 (MQ=255)

                                                    tACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAaata                                    >  1:3943086/1‑93 (MQ=255)

                                                    tACTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAaata                                    >  1:468095/1‑93 (MQ=255)

                                                     aCTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAaataa                                   <  2:3842611/93‑1 (MQ=255)

                                                     aCTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAaataa                                   <  1:5813024/93‑1 (MQ=255)

                                                     aCTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAaataa                                   >  2:6409229/1‑93 (MQ=255)

                                                      cTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAcataat                                  >  2:3085651/1‑93 (MQ=255)

                                                      cTTTATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAaataat                                  >  1:5533824/1‑93 (MQ=255)

                                                       tttATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAAtt                                 >  2:6329452/1‑93 (MQ=255)

                                                        ttATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTa                                <  2:1645010/93‑1 (MQ=255)

                                                        ttATGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTa                                <  1:784707/93‑1 (MQ=255)

                                                         tATGATCATAATCAATAACTGAATTAAGAAACCCAGCTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTAc                               >  2:311655/1‑93 (MQ=255)

                                                          aTGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTAcc                              <  1:5109329/93‑1 (MQ=255)

                                                          aTGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTAcc                              <  1:105767/93‑1 (MQ=255)

                                                           tGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCt                             <  1:1279934/93‑1 (MQ=255)

                                                           tGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCt                             >  2:6129460/1‑93 (MQ=255)

                                                           tGATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCt                             >  2:1912304/1‑93 (MQ=255)

                                                            gATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCtt                            <  2:6353277/93‑1 (MQ=255)

                                                            gATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCtt                            <  2:4961981/93‑1 (MQ=255)

                                                            gATCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCtt                            <  1:1145021/93‑1 (MQ=255)

                                                             aTCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTa                           <  2:5356723/93‑1 (MQ=255)

                                                             aTCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTa                           <  2:570697/93‑1 (MQ=255)

                                                             aTCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTa                           >  1:6420887/1‑93 (MQ=255)

                                                              tCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTAt                          >  1:4973340/1‑93 (MQ=255)

                                                              tCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTAt                          >  2:4085755/1‑93 (MQ=255)

                                                              tCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTAt                          >  1:4428583/1‑93 (MQ=255)

                                                              tCATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTAt                          <  2:2181261/93‑1 (MQ=255)

                                                               cATAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATg                         <  2:3341173/93‑1 (MQ=255)

                                                                 tAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTa                       >  2:1358551/1‑93 (MQ=255)

                                                                 tAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTa                       >  1:2286351/1‑93 (MQ=255)

                                                                 tAATCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGCAAATAGCACAAATAATTACCTTACGTa                       >  1:6221915/1‑93 (MQ=255)

                                                                    tCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATc                    <  1:4317349/93‑1 (MQ=255)

                                                                    tCAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATc                    >  2:2766811/1‑93 (MQ=255)

                                                                     cAATAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCt                   <  2:6034576/93‑1 (MQ=255)

                                                                      aaTAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTa                  >  1:3556542/1‑93 (MQ=255)

                                                                       aTAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTAt                 >  1:3158717/1‑93 (MQ=255)

                                                                       aTAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTAt                 >  1:388354/1‑93 (MQ=255)

                                                                       aTAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTAt                 >  2:2265178/1‑93 (MQ=255)

                                                                        tAACTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATc                >  1:2985116/1‑93 (MQ=255)

                                                                           cTGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTa             >  2:773974/1‑93 (MQ=255)

                                                                            tGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTaa            >  2:4456688/1‑93 (MQ=255)

                                                                            tGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTaa            <  1:772407/93‑1 (MQ=255)

                                                                            tGAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTaa            <  2:701519/93‑1 (MQ=255)

                                                                             gAATTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAAt           >  1:5467225/1‑93 (MQ=255)

                                                                              aaTTAAGAGACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATa          <  2:1702494/93‑1 (MQ=255)

                                                                              aaTTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATa          <  1:6079741/93‑1 (MQ=255)

                                                                               aTTAAGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATAc         >  1:1347453/1‑93 (MQ=255)

                                                                                  aaGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTc      <  2:4249672/93‑1 (MQ=255)

                                                                                  aaGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTc      <  1:3683129/93‑1 (MQ=255)

                                                                                   aGAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCg     >  2:3397763/1‑93 (MQ=255)

                                                                                    gAAACCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGa    >  2:4711423/1‑93 (MQ=255)

                                                                                     aaaCCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGAt   >  1:2484706/1‑93 (MQ=255)

                                                                                     aaaCCCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGAt   <  1:383865/93‑1 (MQ=255)

GAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATT  >  NC_000913/3800568‑3800746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`