BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,802,880	A→G	M233T (ATG→ACG)	rfaP ←	RfaP

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,802,880	0	A	G	99.5%	631.3 / ‑4.6	193	M233T (ATG→ACG)	rfaP	RfaP
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (157/35); minor base T (1/0); total (158/35)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.32e-01

Only 100 of 193 total aligned reads displayed.

TTGCGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCATCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCTTTA  >  NC_000913/3802790‑3802969

  gCGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTccc                                                                                       >  2:6195469/1‑93 (MQ=255)

  gCGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTccc                                                                                       >  2:6578210/1‑93 (MQ=255)

   cGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCa                                                                                      <  1:3499123/93‑1 (MQ=255)

   cGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCa                                                                                      >  2:207326/1‑93 (MQ=255)

   cGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCa                                                                                      <  2:5273519/93‑1 (MQ=255)

   cGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCa                                                                                      >  2:6134309/1‑93 (MQ=255)

    gTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaa                                                                                     >  2:6318613/1‑93 (MQ=255)

    gTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaa                                                                                     >  2:4862107/1‑93 (MQ=255)

    gTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaa                                                                                     >  2:3718912/1‑93 (MQ=255)

     ttGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaaa                                                                                    >  1:4535255/1‑93 (MQ=255)

     ttGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaaa                                                                                    >  1:684029/1‑93 (MQ=255)

     ttGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaaa                                                                                    >  2:3538159/1‑93 (MQ=255)

      tgtgTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaaaa                                                                                   >  2:162813/1‑93 (MQ=255)

        tgtTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATa                                                                                 <  1:6514146/93‑1 (MQ=255)

        tgtTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATa                                                                                 >  1:3713326/1‑93 (MQ=255)

         gtTCGCTCTTTAATACGCTCGGCCTTAACGCCTGCCATGTTCAATAAAATCTGTTCAAGAGACAATATGTTGCGTAAAGGCGTCCCAAAATaa                                                                                >  2:6732201/1‑93 (MQ=255)

             gCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCACAAAATAAACCt                                                                            >  1:212989/1‑93 (MQ=255)

              ctctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCtt                                                                           >  2:5831499/1‑93 (MQ=255)

              ctctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCtt                                                                           >  1:941439/1‑93 (MQ=255)

               tctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTc                                                                          <  1:4926581/93‑1 (MQ=255)

               tctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTc                                                                          >  1:3532206/1‑93 (MQ=255)

               tctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTc                                                                          >  2:6266307/1‑93 (MQ=255)

                  ttAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATa                                                                       >  2:6464252/1‑93 (MQ=255)

                  ttAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATa                                                                       >  2:3123608/1‑93 (MQ=255)

                   tAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATaa                                                                      <  2:3379766/93‑1 (MQ=255)

                    aaTACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATaaa                                                                     <  1:333297/93‑1 (MQ=255)

                    aaTACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATaaa                                                                     <  2:5034230/93‑1 (MQ=255)

                    aaTACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATaaa                                                                     >  1:732332/1‑93 (MQ=255)

                     aTACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAAt                                                                    >  1:2695802/1‑93 (MQ=255)

                     aTACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAAt                                                                    >  1:4250417/1‑93 (MQ=255)

                      tACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATc                                                                   >  1:5519845/1‑93 (MQ=255)

                      tACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATc                                                                   >  1:1192774/1‑93 (MQ=255)

                      tACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATc                                                                   >  1:299369/1‑93 (MQ=255)

                       aCGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCg                                                                  >  2:4162359/1‑93 (MQ=255)

                          cTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCa                                                               >  2:1683590/1‑93 (MQ=255)

                          cTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCa                                                               >  2:4757669/1‑93 (MQ=255)

                             ggCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGat                                                            >  1:159725/1‑93 (MQ=255)

                              gCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGata                                                           >  1:2050560/1‑93 (MQ=255)

                              gCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGata                                                           >  1:551163/1‑93 (MQ=255)

                                cTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtc                                                         >  2:5913642/1‑93 (MQ=255)

                                 ttAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtct                                                        >  1:97396/1‑93 (MQ=255)

                                 ttAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtct                                                        >  1:892931/1‑93 (MQ=255)

                                 ttAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtct                                                        >  1:3280911/1‑93 (MQ=255)

                                 ttAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtct                                                        >  1:3392651/1‑93 (MQ=255)

                                 ttAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtct                                                        >  2:4824431/1‑93 (MQ=255)

                                 ttAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtct                                                        >  2:6139471/1‑93 (MQ=255)

                                 ttAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtct                                                        >  2:2531122/1‑93 (MQ=255)

                                  tAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtctc                                                       <  2:6286034/93‑1 (MQ=255)

                                    aCGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCtt                                                     >  2:6710985/1‑93 (MQ=255)

                                      gCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTg                                                   >  2:3188083/1‑93 (MQ=255)

                                      gCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTg                                                   >  2:3926902/1‑93 (MQ=255)

                                       cTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGc                                                  >  1:3249196/1‑93 (MQ=255)

                                        ttGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCg                                                 >  2:5176493/1‑93 (MQ=255)

                                        ttGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCg                                                 >  1:6473146/1‑93 (MQ=255)

                                        ttGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCg                                                 >  1:5757753/1‑93 (MQ=255)

                                          gCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTc                                               >  2:4459884/1‑93 (MQ=255)

                                            cATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAg                                             >  2:2894533/1‑93 (MQ=255)

                                             aTGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAgg                                            >  1:1956794/1‑93 (MQ=255)

                                              tGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGc                                           >  1:4215515/1‑93 (MQ=255)

                                               gTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGcc                                          >  1:5074688/1‑93 (MQ=255)

                                                 tCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCaa                                        >  2:3297534/1‑93 (MQ=255)

                                                 tCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCaa                                        >  2:2664749/1‑93 (MQ=255)

                                                  cAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAat                                       >  2:1295500/1‑93 (MQ=255)

                                                  cAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAat                                       >  1:3442560/1‑93 (MQ=255)

                                                       aaTTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCa                                  >  2:6615228/1‑93 (MQ=255)

                                                         ttCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCAtt                                <  1:4717198/93‑1 (MQ=255)

                                                           cTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATtga                              >  2:1855022/1‑93 (MQ=255)

                                                            tGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATtgat                             <  1:2582988/93‑1 (MQ=255)

                                                             gTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATtgatg                            >  2:2574158/1‑93 (MQ=255)

                                                              ttCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATtgatga                           >  1:1175292/1‑93 (MQ=255)

                                                              ttCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATtgatga                           >  2:3023753/1‑93 (MQ=255)

                                                               tCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATgag                          >  1:5472488/1‑93 (MQ=255)

                                                                 aaGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGaa                        <  2:65090/93‑1 (MQ=255)

                                                                 aaGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGaa                        >  2:792622/1‑93 (MQ=255)

                                                                  agagACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGaaa                       >  1:4060524/1‑93 (MQ=255)

                                                                   gagaCAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAat                      >  2:2384683/1‑93 (MQ=255)

                                                                     gaCAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAatat                    >  2:655139/1‑93 (MQ=255)

                                                                     gaCAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAatat                    >  1:4299061/1‑93 (MQ=255)

                                                                      aCAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAAtata                   >  2:5735564/1‑93 (MQ=255)

                                                                      aCAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAAtata                   <  1:2285194/93‑1 (MQ=255)

                                                                      aCAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAAtata                   >  1:6575460/1‑93 (MQ=255)

                                                                       cAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATaa                  <  2:3429245/93‑1 (MQ=255)

                                                                         atatTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAAc                >  1:1446720/1‑93 (MQ=255)

                                                                         atatTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAAc                <  1:3821107/93‑1 (MQ=255)

                                                                           atTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGACAATATTCATTGATGAGAAATATAAACCa              >  1:3973215/1‑93 (MQ=255)

                                                                            ttttGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCaa             >  1:5159930/1‑93 (MQ=255)

                                                                            ttttGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCaa             >  1:6140164/1‑93 (MQ=255)

                                                                             tttGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAAt            >  1:3354771/1‑93 (MQ=255)

                                                                                gCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAg         >  2:248290/1‑93 (MQ=255)

                                                                                gCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAg         >  1:5878574/1‑93 (MQ=255)

                                                                                 cGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAgg        <  2:282096/93‑1 (MQ=255)

                                                                                 cGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAgg        <  2:6127650/93‑1 (MQ=255)

                                                                                   tAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTc      >  2:1413331/1‑93 (MQ=255)

                                                                                    aaaGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCt     <  2:755228/93‑1 (MQ=255)

                                                                                     aaGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCtt    >  1:2440105/1‑93 (MQ=255)

                                                                                     aaGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCtt    >  1:305185/1‑93 (MQ=255)

                                                                                      aGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCttt   >  1:5298613/1‑93 (MQ=255)

                                                                                       ggCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCTTTa  <  1:1799044/93‑1 (MQ=255)

                                                                                       ggCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCTTTa  <  1:4871620/93‑1 (MQ=255)

                                                                                       ggCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCTTTa  <  2:5558304/93‑1 (MQ=255)

TTGCGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCATCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCTTTA  >  NC_000913/3802790‑3802969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`