BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,847,265	A→G	W167R (TGG→CGG)	b3668 ←	sensor histidine protein kinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,847,265	0	A	G	100.0%	793.7 / NA	248	W167R (TGG→CGG)	b3668	sensor histidine protein kinase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (106/142); total (106/142)

Only 100 of 265 total aligned reads displayed.

GACTGATAACAAACAGCAGCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCAGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACG  >  NC_000913/3847175‑3847354

gaCTGATAACAAACAGCAGCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCggg                                                                                         >  1:1728076/1‑93 (MQ=255)

  cTGATAACAAACAGCAGCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGgtg                                                                                       <  2:6345174/93‑1 (MQ=255)

   tGATAACAAACAGCAGCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGgtgt                                                                                      >  1:3526955/1‑93 (MQ=255)

    gaaaacaaacaGCAGCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGtt                                                                                     <  2:1082614/90‑1 (MQ=255)

    gATAACAAACAGCAGCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCggggggt                                                                                     >  1:4752656/1‑89 (MQ=255)

    gATAACAAACAGCAGCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGtt                                                                                     <  1:3294316/93‑1 (MQ=255)

    gATAACAAACAGCAGCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGtt                                                                                     <  1:4808859/93‑1 (MQ=255)

     aTAACAAACAGCAGCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTa                                                                                    <  1:336920/93‑1 (MQ=255)

       aacaaacaGCAGCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTAtt                                                                                  <  2:730983/93‑1 (MQ=255)

       aacaaacaGCAGCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTAtt                                                                                  <  1:621833/93‑1 (MQ=255)

       aacaaacaGCAGCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTAtt                                                                                  >  1:2239116/1‑93 (MQ=255)

        acaaacaGCAGCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGGAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTg                                                                                 >  1:5064809/1‑93 (MQ=255)

        acaaacaGCAGCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTg                                                                                 <  2:5800458/93‑1 (MQ=255)

         caaacaGCAGCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTgg                                                                                >  2:6458316/1‑93 (MQ=255)

         caaacaGCAGCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTgg                                                                                <  2:6209299/93‑1 (MQ=255)

         caaacaGCAGCAAGTACCAGACCAGATGTCGCCAGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTgg                                                                                >  1:2013021/1‑93 (MQ=255)

          aaacaGCAGCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGc                                                                               >  2:3429807/1‑93 (MQ=255)

           agcagcagCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAGCCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCg                                                                              <  2:2721708/91‑1 (MQ=255)

            acaGCAGCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCga                                                                             >  2:3667037/1‑93 (MQ=255)

            acaGCAGCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCga                                                                             <  2:4528551/93‑1 (MQ=255)

              agcagcAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCgaga                                                                           >  1:677202/1‑93 (MQ=255)

              agcagcAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCgaga                                                                           <  1:5765829/93‑1 (MQ=255)

                cagcaAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATa                                                                         <  2:3237468/93‑1 (MQ=255)

                 agcaAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAg                                                                        <  1:2455257/93‑1 (MQ=255)

                  gcaAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTAGCGACAGAGt                                                                       >  1:4672335/1‑93 (MQ=255)

                     aGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGcc                                                                    <  1:791226/93‑1 (MQ=255)

                     aGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGcc                                                                    >  1:1485272/1‑93 (MQ=255)

                      gTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCa                                                                   <  2:3268269/93‑1 (MQ=255)

                      gTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCa                                                                   <  1:493357/93‑1 (MQ=255)

                            gaccagaTGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAacac                                                             >  2:2968691/1‑93 (MQ=255)

                             accagaTGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACAcc                                                            <  1:4229297/93‑1 (MQ=255)

                             accagaTGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACAcc                                                            >  1:4365322/1‑93 (MQ=255)

                             accagaTGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACAcc                                                            <  1:6021365/93‑1 (MQ=255)

                              ccagaTGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCa                                                           <  2:6306956/93‑1 (MQ=255)

                              ccagaTGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCa                                                           <  2:2540294/93‑1 (MQ=255)

                               cagaTGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAg                                                          <  2:1604423/93‑1 (MQ=255)

                                agaTGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGa                                                         <  2:703125/93‑1 (MQ=255)

                                agaTGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGGGTTATTGGCGAGATAGTGCCAGAACACCAGa                                                         >  2:4628708/1‑93 (MQ=255)

                                 gttGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGAc                                                        >  1:6412724/3‑93 (MQ=255)

                                 gaTGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGAc                                                        <  2:4965147/93‑1 (MQ=255)

                                  aTGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACa                                                       <  1:3136512/93‑1 (MQ=255)

                                   tGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGGTATTGGCGAGATAGTGCCAGAACACCAGACat                                                      >  2:5887613/1‑93 (MQ=255)

                                      cGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATc                                                   <  1:5615035/93‑1 (MQ=255)

                                      cGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATc                                                   <  1:163261/93‑1 (MQ=255)

                                       gCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCg                                                  <  1:5288989/93‑1 (MQ=255)

                                       ccccGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCg                                                  <  2:3165525/92‑1 (MQ=255)

                                        cccGCTCGAGTGGAGTGGCTGAGAACCCAGTGACGAACCGAGCGGCAGCCGGGTTTTATTGGCGAGATAGTGCCAGAACACCAGACATATCgg                                                 <  1:4592449/93‑1 (MQ=255)

                                        cccGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCgg                                                 >  1:1196410/1‑93 (MQ=255)

                                          cgcgCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCgggg                                               <  1:5895361/93‑1 (MQ=255)

                                          cgcgCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCgggg                                               >  2:3895755/1‑93 (MQ=255)

                                           gcgcGAGTTGATTGGCTGAGAAACCAGTGACGGCCCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGGACACCAGACAGATCGGGGc                                              <  1:6510091/93‑1 (MQ=255)

                                           gcgcCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGGTAGTGCCAGAACACCAGACATATTGGGGc                                              >  2:5878212/1‑93 (MQ=255)

                                           gcgcCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGc                                              >  2:3319439/1‑93 (MQ=255)

                                              ccAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAg                                           >  1:1328774/1‑93 (MQ=255)

                                              ccAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAg                                           >  1:2582279/1‑93 (MQ=255)

                                               cAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGc                                          >  2:3599676/1‑93 (MQ=255)

                                               cAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGc                                          >  2:5415811/1‑93 (MQ=255)

                                                aGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCg                                         >  2:5441420/1‑93 (MQ=255)

                                                aGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGCGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCGAGCg                                         >  1:4691580/1‑93 (MQ=255)

                                                 gTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATGGTGCCAGAACACCAGACATATCGGGGCCAGCGt                                        >  2:1390240/1‑93 (MQ=255)

                                                     aTTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAgg                                    <  2:2164891/93‑1 (MQ=255)

                                                     aTTGGCGGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAgg                                    <  2:1369563/93‑1 (MQ=255)

                                                      ttGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGgc                                   >  1:1800792/1‑93 (MQ=255)

                                                      ttGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGGGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCATgc                                   >  2:372936/1‑93 (MQ=255)

                                                      tgggCTGAGAACCCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGAGTCAGgc                                   <  1:6337708/91‑1 (MQ=255)

                                                        ggCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGgccg                                 <  2:2383733/93‑1 (MQ=255)

                                                         gCTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGgccgc                                >  2:5091631/1‑93 (MQ=255)

                                                          cTGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGgccgcc                               <  2:4181432/93‑1 (MQ=255)

                                                           tGAGAAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCa                              >  2:3787492/1‑93 (MQ=255)

                                                            gagaAACCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAg                             >  1:1088811/1‑93 (MQ=255)

                                                                aaCCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGGCCGCGTCAGGCCGCCAGCTaa                         >  1:5717194/1‑93 (MQ=255)

                                                                 aCCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTaaa                        >  1:4117626/1‑93 (MQ=255)

                                                                 aCCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTaaa                        <  1:5447132/93‑1 (MQ=255)

                                                                 aCCAGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAAGCCGCCAGTTaaa                        >  1:5830623/1‑93 (MQ=255)

                                                                  ccAGTGACGCACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGACCACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAg                       <  1:2859742/93‑1 (MQ=255)

                                                                    aGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTc                     >  1:4005425/1‑93 (MQ=255)

                                                                    aGTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTc                     >  1:3727079/1‑93 (MQ=255)

                                                                     gTGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCa                    >  2:181760/1‑93 (MQ=255)

                                                                      tGACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAg                   <  2:3069753/93‑1 (MQ=255)

                                                                       gACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGc                  >  2:4809011/1‑93 (MQ=255)

                                                                       gACGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGc                  <  1:2723407/93‑1 (MQ=255)

                                                                        aCGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCa                 >  2:4028284/1‑93 (MQ=255)

                                                                         cGGACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCaa                <  2:6147691/93‑1 (MQ=255)

                                                                          ggACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAAc               <  2:901711/93‑1 (MQ=255)

                                                                          ggACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAAc               <  2:6648673/93‑1 (MQ=255)

                                                                           gACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACa              <  1:4033235/93‑1 (MQ=255)

                                                                           gACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACa              >  2:510030/1‑93 (MQ=255)

                                                                           gACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACa              >  2:2686701/1‑93 (MQ=255)

                                                                           gACCGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACa              >  1:1377696/1‑93 (MQ=255)

                                                                             ccGAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAgc            <  1:3596337/93‑1 (MQ=255)

                                                                               gAGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAgcgc          <  2:4612442/93‑1 (MQ=255)

                                                                                aGCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCa         <  1:1910043/93‑1 (MQ=255)

                                                                                 gCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCAt        >  2:2034621/1‑93 (MQ=255)

                                                                                 gCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCAt        <  2:5256326/93‑1 (MQ=255)

                                                                                 gCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCAt        <  2:2279796/93‑1 (MQ=255)

                                                                                 gCGGCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCAt        >  2:4350094/1‑93 (MQ=255)

                                                                                    gCAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTcc     <  2:1483084/93‑1 (MQ=255)

                                                                                     cAGCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCa    <  1:2928011/93‑1 (MQ=255)

                                                                                       gCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACg  >  2:1221500/1‑93 (MQ=255)

                                                                                       gCCGGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACg  >  2:6248206/1‑93 (MQ=255)

GACTGATAACAAACAGCAGCAAGTACCAGACCAGATGTCGCCCGCGCCAGTTGATTGGCTGAGAAACCAGTGACGGACCGAGCGGCAGCCAGGTGTTATTGGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACG  >  NC_000913/3847175‑3847354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`