BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	480,099	A→G	intergenic (‑167/+379)	ybaJ ← / ← acrB	hypothetical protein/acridine efflux pump

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	480,099	0	A	G	100.0%	714.5 / NA	218	intergenic (‑167/+379)	ybaJ/acrB	hypothetical protein/acridine efflux pump
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (94/124); total (94/124)

Only 100 of 219 total aligned reads displayed.

TCTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGAA  >  NC_000913/480009‑480188

tctcGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCt                                                                                         <  2:3876835/93‑1 (MQ=255)

tctcGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCt                                                                                         <  1:3362332/93‑1 (MQ=255)

tctcGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCt                                                                                         >  2:4576827/1‑93 (MQ=255)

tctcGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCt                                                                                         <  2:6726670/93‑1 (MQ=255)

 ctcGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTc                                                                                        <  2:2313698/93‑1 (MQ=255)

  tcGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCa                                                                                       >  2:1567137/1‑93 (MQ=255)

  tcGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCa                                                                                       >  2:4420018/1‑93 (MQ=255)

  tcGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCa                                                                                       <  1:2395614/93‑1 (MQ=255)

    gTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACt                                                                                     <  1:3513400/93‑1 (MQ=255)

     tttGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGTAAGCGGGACAGGGCTCACtt                                                                                    <  1:5444221/93‑1 (MQ=255)

     tttGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACtt                                                                                    >  1:4851511/1‑93 (MQ=255)

     tttGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACtt                                                                                    >  1:5683836/1‑93 (MQ=255)

       tGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACtttt                                                                                  <  1:4194570/93‑1 (MQ=255)

        gTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACttttt                                                                                 <  1:3161769/93‑1 (MQ=255)

         ttAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTc                                                                                >  1:6229146/1‑93 (MQ=255)

          tAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCa                                                                               <  2:3096914/93‑1 (MQ=255)

            gCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATa                                                                             <  2:6310433/93‑1 (MQ=255)

            gCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATa                                                                             >  2:5677381/1‑93 (MQ=255)

            gCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATa                                                                             <  1:5112129/93‑1 (MQ=255)

            gCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATa                                                                             >  1:6496426/1‑93 (MQ=255)

             cTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATAc                                                                            <  1:4600268/93‑1 (MQ=255)

              ttAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACt                                                                           >  2:4957121/1‑93 (MQ=255)

               tAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTa                                                                          <  1:3927437/93‑1 (MQ=255)

                aaCTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAg                                                                         <  1:940653/93‑1 (MQ=255)

                  cTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCa                                                                       <  2:5000049/93‑1 (MQ=255)

                  cTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCa                                                                       >  2:2911479/1‑93 (MQ=255)

                   tataAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCAc                                                                      >  2:2516059/1‑93 (MQ=255)

                   tataAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCAc                                                                      <  2:2715865/93‑1 (MQ=255)

                    ataAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACt                                                                     <  2:6098702/93‑1 (MQ=255)

                      aaGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTaa                                                                   >  1:5319445/1‑93 (MQ=255)

                       aGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAAc                                                                  <  2:3689896/93‑1 (MQ=255)

                        gCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAAcc                                                                 >  1:3701200/1‑93 (MQ=255)

                        gCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAAcc                                                                 <  2:4284298/93‑1 (MQ=255)

                            ctctTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCgca                                                             >  1:2839426/1‑93 (MQ=255)

                            ctctTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCgca                                                             <  2:3221337/93‑1 (MQ=255)

                             tctTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCgcag                                                            >  1:3553554/1‑93 (MQ=255)

                                ttGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGcagcag                                                         <  1:1406636/93‑1 (MQ=255)

                                 tGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAgg                                                        <  1:4692885/93‑1 (MQ=255)

                                  gCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGt                                                       <  2:1494424/93‑1 (MQ=255)

                                    aGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTaa                                                     >  1:3770418/1‑93 (MQ=255)

                                     ggTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTaaa                                                    <  1:2646244/93‑1 (MQ=255)

                                     ggTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTaaa                                                    <  1:6142053/93‑1 (MQ=255)

                                      gTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTaaaa                                                   >  1:1039962/1‑93 (MQ=255)

                                       ttttCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAg                                                  <  1:4236357/93‑1 (MQ=255)

                                        tttCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGc                                                 <  1:6244772/93‑1 (MQ=255)

                                         ttCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCa                                                <  2:6060076/93‑1 (MQ=255)

                                           cATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGt                                              <  2:4184943/93‑1 (MQ=255)

                                           cATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGt                                              <  2:4853075/93‑1 (MQ=255)

                                            aTCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGtt                                             <  1:382491/93‑1 (MQ=255)

                                            aTCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGtt                                             <  2:3524507/93‑1 (MQ=255)

                                            aTCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGtt                                             <  1:961887/93‑1 (MQ=255)

                                            aTCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGtt                                             >  2:1108422/1‑93 (MQ=255)

                                                cATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCt                                         <  2:107888/93‑1 (MQ=255)

                                                cATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCt                                         <  1:5774409/93‑1 (MQ=255)

                                                 attattACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTc                                        >  1:6476543/1‑93 (MQ=255)

                                                  ttattaCGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCg                                       >  1:4087826/1‑93 (MQ=255)

                                                   tattaCGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGa                                      <  1:1501206/93‑1 (MQ=255)

                                                    attaCGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGaa                                     >  2:2993544/1‑93 (MQ=255)

                                                     ttaCGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAAc                                    <  2:1449787/93‑1 (MQ=255)

                                                      taCGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACt                                   >  2:5453811/1‑93 (MQ=255)

                                                        cGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTAt                                 <  2:5764384/93‑1 (MQ=255)

                                                        cGAAAAATTACAATGAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTAt                                 <  2:4844351/93‑1 (MQ=255)

                                                         gAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTAtt                                >  2:6602685/1‑93 (MQ=255)

                                                         gAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTAtt                                >  1:607687/1‑93 (MQ=255)

                                                           aaaaTTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCa                              >  2:3482370/1‑93 (MQ=255)

                                                            aaaTTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCAt                             <  1:1599003/93‑1 (MQ=255)

                                                             aaTTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATa                            >  2:5316364/1‑93 (MQ=255)

                                                              aTTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATaa                           >  2:4884162/1‑93 (MQ=255)

                                                               ttACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAAc                          >  2:1762031/1‑93 (MQ=255)

                                                               ttACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAAc                          <  1:2302544/93‑1 (MQ=255)

                                                                tACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACa                         <  1:4635707/93‑1 (MQ=255)

                                                                  cAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACAtt                       <  2:3073243/93‑1 (MQ=255)

                                                                  cAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACAtt                       <  1:4376955/93‑1 (MQ=255)

                                                                  cAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGATTGCTCGAACTATTCATAACAtt                       <  2:6143132/93‑1 (MQ=255)

                                                                   aaTTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACAttt                      <  2:75641/93‑1 (MQ=255)

                                                                   aaTTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACAttt                      >  1:6375620/1‑93 (MQ=255)

                                                                   aaTTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACAttt                      >  1:708603/1‑93 (MQ=255)

                                                                    aTTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTc                     >  1:6592157/1‑93 (MQ=255)

                                                                     ttAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCa                    <  2:3767602/93‑1 (MQ=255)

                                                                     ttAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCa                    >  1:4467587/1‑93 (MQ=255)

                                                                      tAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAg                   <  2:2143202/93‑1 (MQ=255)

                                                                      tAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACAAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAg                   <  2:4392443/93‑1 (MQ=255)

                                                                        ggaaggaaGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGa                 <  2:2511007/93‑1 (MQ=255)

                                                                        ggaaggaaGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGa                 <  1:6681023/93‑1 (MQ=255)

                                                                         gaaggaagCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGAt                <  1:1738213/93‑1 (MQ=255)

                                                                          aaggaagCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGAtt               >  2:2605268/1‑93 (MQ=255)

                                                                           aggaagCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTa              >  1:5353148/1‑93 (MQ=255)

                                                                           aggaagCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTa              <  2:115536/93‑1 (MQ=255)

                                                                            ggaagCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTAt             <  2:4792059/93‑1 (MQ=255)

                                                                             gaagCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATc            <  2:6269955/93‑1 (MQ=255)

                                                                             gaagCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATc            <  1:5888720/93‑1 (MQ=255)

                                                                               agCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGc          >  2:88529/1‑93 (MQ=255)

                                                                               agCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGc          >  2:1686235/1‑93 (MQ=255)

                                                                                gCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGcc         <  1:2164424/93‑1 (MQ=255)

                                                                                 cGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCa        <  2:6488141/93‑1 (MQ=255)

                                                                                 cGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCa        <  1:165072/93‑1 (MQ=255)

                                                                                   ggACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGa      <  1:3294332/93‑1 (MQ=255)

                                                                                       aGGGCTCACTTTTTCATACTAGCAGTAGCCCGCAGCAGGTAAGAGCAGTTTGCTCGAACTATTCATAACATTCCAGGATTATCGCCAGATGaa  <  1:2372284/93‑1 (MQ=255)

                                                                                       aGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGaa  >  2:5915634/1‑93 (MQ=255)

                                                                                       aGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGaa  >  1:1242664/1‑93 (MQ=255)

TCTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGAA  >  NC_000913/480009‑480188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`