Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,991,539 T→C N45S (AAT→AGT) 
I26T (ATT→ACT) 
cyaY ←
b3808 →
hypothetical protein
hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,991,5390TC100.0% 809.3 / NA 243N45S (AAT→AGT) 
I26T (ATT→ACT) 
cyaY
b3808
hypothetical protein
hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (114/129);  total (114/129)

Only 100 of 254 total aligned reads displayed.

CCTTTCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCATTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGTTCTTCAATGGTC  >  NC_000913/3991449‑3991628
                                                                                           |                                                                                         
ccTTTCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACtc                                                                                         <  2:2874631/93‑1 (MQ=255)
 cTTTCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCActct                                                                                        >  1:3298189/1‑93 (MQ=255)
 cTTTCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCActct                                                                                        >  1:3111748/1‑93 (MQ=255)
 cTTTCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCActct                                                                                        >  1:3013811/1‑93 (MQ=255)
 cTTTCAGGTCAAAAGGGTAGCCGCCCTGTTTGTTGGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCActct                                                                                        <  2:770981/93‑1 (MQ=255)
  tttCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACtctc                                                                                       >  1:5543036/1‑93 (MQ=255)
   ttCAGGTCAAAATGGTAGCCGCCCTGTTGGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCa                                                                                      <  2:6518590/93‑1 (MQ=255)
    tCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCaa                                                                                     >  2:2591433/1‑93 (MQ=255)
    tCAGGTCAAAAGGGTAGCGGCCCTGTTGGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCaa                                                                                     <  1:1901174/93‑1 (MQ=255)
     cAGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCaaa                                                                                    <  1:2123826/93‑1 (MQ=255)
       ggcaaaaaGGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCAGCTCCTGGCGGTGGATAATGATTTTGCTGCCACTCTCAAAgg                                                                                  <  2:4703448/89‑1 (MQ=255)
       ggTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAgg                                                                                  >  2:1976135/1‑93 (MQ=255)
        gTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGt                                                                                 <  1:2214299/93‑1 (MQ=255)
         tCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTa                                                                                >  2:1836101/1‑93 (MQ=255)
           aaaaTGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTTGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAAt                                                                              <  2:4819531/93‑1 (MQ=255)
           aaaaTGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAAt                                                                              <  1:3828089/93‑1 (MQ=255)
           aaaaTGGTAGCCGCCCTGTTGGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAAt                                                                              <  1:4435413/93‑1 (MQ=255)
            aaaTGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATg                                                                             <  1:5053271/93‑1 (MQ=255)
             aaTGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATgg                                                                            >  2:127216/1‑93 (MQ=255)
              aTGTTAGCCGCCCTGTTTGGTGCCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGt                                                                           <  1:4866233/93‑1 (MQ=255)
                tgTAGCCGCCTTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCa                                                                         <  2:5709405/92‑1 (MQ=255)
                ggTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCa                                                                         <  2:1764348/93‑1 (MQ=255)
                 gTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAg                                                                        <  1:6008795/93‑1 (MQ=255)
                 gTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAg                                                                        <  2:2848029/93‑1 (MQ=255)
                  tAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGt                                                                       >  2:3983385/1‑93 (MQ=255)
                   aGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGTTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTa                                                                      <  2:328741/93‑1 (MQ=255)
                   aGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTa                                                                      >  1:5753384/1‑93 (MQ=255)
                   aGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTa                                                                      >  2:5174280/1‑93 (MQ=255)
                    gccgccCTTTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTAc                                                                     <  2:3240527/93‑1 (MQ=255)
                    gccgccCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTAc                                                                     <  2:2145914/93‑1 (MQ=255)
                     ccgccCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGTTCAGTAcg                                                                    >  1:738690/1‑93 (MQ=255)
                     ccgccCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTAcg                                                                    <  2:2111629/93‑1 (MQ=255)
                      cgccCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTAcgc                                                                   <  2:4941704/93‑1 (MQ=255)
                       gccCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTAcgcc                                                                  >  2:2403726/1‑93 (MQ=255)
                         ccTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTAcgccgc                                                                >  2:5249599/1‑93 (MQ=255)
                         ccTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTAcgccgc                                                                >  1:340582/1‑93 (MQ=255)
                         ccTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTAcgccgc                                                                >  2:2517521/1‑93 (MQ=255)
                            gTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGt                                                             <  1:3555401/93‑1 (MQ=255)
                               tGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGa                                                          <  2:1177000/93‑1 (MQ=255)
                                 gTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGAtt                                                        <  1:1267649/93‑1 (MQ=255)
                                  ttGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGAttt                                                       >  1:6367745/1‑93 (MQ=255)
                                        gccaTACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGt                                                 >  2:1554767/1‑93 (MQ=255)
                                        gccaTACCTGGGGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGt                                                 >  1:875018/1‑93 (MQ=255)
                                         ccaTCCCTGGTGCAGCGGCTCTTGGCGTTTGATAATGATTTTGCTGCCGCTCTCAAAGGTAATGCTCAGTCCGCCGCCGTTGATTTCGCAGTc                                                <  1:2881057/93‑1 (MQ=255)
                                         ccaTACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTc                                                <  1:1579847/93‑1 (MQ=255)
                                             aCCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGata                                            <  1:6213342/93‑1 (MQ=255)
                                              ccTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGatat                                           >  1:6576088/1‑93 (MQ=255)
                                              ccTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGatat                                           <  2:1064436/93‑1 (MQ=255)
                                              ccTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGatat                                           <  1:5982210/93‑1 (MQ=255)
                                               cTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATc                                          >  2:4023715/1‑93 (MQ=255)
                                                tGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCg                                         >  2:4519200/1‑93 (MQ=255)
                                                 ggTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGc                                        <  1:3709478/93‑1 (MQ=255)
                                                 ggTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGc                                        <  2:826539/93‑1 (MQ=255)
                                                  gTGCGGCGGATCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCt                                       <  1:1107891/93‑1 (MQ=255)
                                                  gTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCt                                       <  2:3099102/93‑1 (MQ=255)
                                                  gTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCt                                       <  1:6499548/93‑1 (MQ=255)
                                                  gTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCt                                       >  1:4968510/1‑93 (MQ=255)
                                                    gCAGCGGCCCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGt                                     <  1:6625234/93‑1 (MQ=255)
                                                     cAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTc                                    <  1:2644043/93‑1 (MQ=255)
                                                      aGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCg                                   >  2:2727519/1‑93 (MQ=255)
                                                      aGCGGCGCCGGGCTGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCg                                   <  2:193145/93‑1 (MQ=255)
                                                       gCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGc                                  >  2:4138542/1‑93 (MQ=255)
                                                       gCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGc                                  >  2:719970/1‑93 (MQ=255)
                                                       gCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGc                                  >  1:470235/1‑93 (MQ=255)
                                                       gCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGc                                  >  2:4391266/1‑93 (MQ=255)
                                                        cGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGcc                                 >  2:4293941/1‑93 (MQ=255)
                                                        cGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGcc                                 <  2:5597321/93‑1 (MQ=255)
                                                         ggCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCa                                >  2:2961866/1‑93 (MQ=255)
                                                          gCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCAt                               >  2:6222763/1‑93 (MQ=255)
                                                          gCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCAt                               <  1:4725685/93‑1 (MQ=255)
                                                             cttGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATccc                            <  2:6043603/91‑1 (MQ=255)
                                                             ccTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATccc                            >  2:3627649/1‑93 (MQ=255)
                                                              cTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCa                           >  2:1353808/1‑93 (MQ=255)
                                                              cTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCa                           >  1:995808/1‑93 (MQ=255)
                                                              cTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCa                           >  1:4614082/1‑93 (MQ=255)
                                                                ggCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAgt                         >  2:3032311/1‑93 (MQ=255)
                                                                 gCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAgtc                        >  2:2674318/1‑93 (MQ=255)
                                                                  cGGTTTATAATGATTTGGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAgtcg                       <  1:4351520/93‑1 (MQ=255)
                                                                   ggTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAgtcgt                      >  2:6652007/1‑93 (MQ=255)
                                                                    gTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAgtcgtc                     >  1:3339403/1‑93 (MQ=255)
                                                                    gTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAgtcgtc                     <  1:5353978/93‑1 (MQ=255)
                                                                      tGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCa                   <  2:802730/93‑1 (MQ=255)
                                                                       gATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAg                  >  1:5672805/1‑93 (MQ=255)
                                                                        aTAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAgg                 <  2:917559/93‑1 (MQ=255)
                                                                        aTAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAgg                 <  1:5094756/93‑1 (MQ=255)
                                                                         tAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGc                >  1:2723259/1‑93 (MQ=255)
                                                                         tAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGc                >  2:3770202/1‑93 (MQ=255)
                                                                           aTGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGt              >  1:2966532/1‑93 (MQ=255)
                                                                           aTGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGt              >  2:225669/1‑93 (MQ=255)
                                                                           aTGATTTTGCTGCCACTCTCAAAGGGAATGGTCAGTACGCCGCCGTTGATTTCGCAGGCGATATCGCTGTCGGCATCCCAGTCGTCCAGGGGt              >  1:1746033/1‑93 (MQ=255)
                                                                            tGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGtt             <  1:2927887/93‑1 (MQ=255)
                                                                              aTTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGttct           <  2:5037423/93‑1 (MQ=255)
                                                                              aTTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGgtct           >  2:5492820/1‑93 (MQ=255)
                                                                               ttttGCCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGttct           <  1:2470925/93‑1 (MQ=255)
                                                                               ttttGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGttctt          <  1:3524991/93‑1 (MQ=255)
                                                                               ttttGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGttctt          <  1:790198/93‑1 (MQ=255)
                                                                                   gctgcCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGTTCTTCAAt      <  2:6322474/93‑1 (MQ=255)
                                                                                      tgcCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGTTCTTCAATgg    <  2:6170555/93‑1 (MQ=255)
                                                                                        ccACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGTTCTTCAATGGTc  <  2:4619517/93‑1 (MQ=255)
                                                                                        ccACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGTTCTTCAATGGTc  <  1:1491508/93‑1 (MQ=255)
                                                                                           |                                                                                         
CCTTTCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCATTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGTTCTTCAATGGTC  >  NC_000913/3991449‑3991628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: