BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,096,446	C→T	H104Y (CAC→TAC)	rhaR →	RhaR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,096,446	0	C	T	100.0%	977.6 / NA	266	H104Y (CAC→TAC)	rhaR	RhaR
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (121/145); total (121/145)

Only 100 of 278 total aligned reads displayed.

GTCTGGCGCGGTAATGGCCTGCATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAACACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATCTTGACTGGCAGGGGGCG  >  NC_000913/4096356‑4096535

gTCTGGCGCGGTAATGGCCTGCATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAatac                                                                                         >  2:4603332/1‑93 (MQ=255)

   tGGCGCGGTAATGGCCTGCATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTcc                                                                                      >  2:2989087/1‑93 (MQ=255)

    ggCGCGGTAATGGCCTGCATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCt                                                                                     <  1:854220/93‑1 (MQ=255)

      cgcgGTAATGGCCTGCATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTAc                                                                                   <  2:1294148/93‑1 (MQ=255)

        cgGTAATGGCCTGCATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGc                                                                                 <  2:3501499/93‑1 (MQ=255)

          gTAATGGCCTGCATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCtt                                                                               <  2:2773650/93‑1 (MQ=255)

            aaTGGCCTGCATGTACTCAACGATCGCCCTTATCGCATTGCCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTcc                                                                             <  2:6232441/93‑1 (MQ=255)

            aaTGGCCTGCATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTcc                                                                             >  1:5550812/1‑93 (MQ=255)

             aTGGCCTGCATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCg                                                                            >  1:4268583/1‑93 (MQ=255)

               ggCCTGCATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGtt                                                                          <  1:2395390/93‑1 (MQ=255)

                 ccTGCATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTaa                                                                        <  2:3388990/93‑1 (MQ=255)

                 ccTGCATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTaa                                                                        <  2:3241244/93‑1 (MQ=255)

                 ccTGCATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTaa                                                                        <  2:2019889/93‑1 (MQ=255)

                  cTGCATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAAc                                                                       >  1:1175507/1‑93 (MQ=255)

                  cTGCATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAAc                                                                       <  1:2469960/93‑1 (MQ=255)

                   tGCATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACg                                                                      >  2:5350780/1‑93 (MQ=255)

                    tcATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGa                                                                     <  1:6646375/92‑1 (MQ=255)

                    gCATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGa                                                                     <  2:2202975/93‑1 (MQ=255)

                    gCATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGa                                                                     >  1:1326735/1‑93 (MQ=255)

                     cATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGAt                                                                    >  1:1927274/1‑93 (MQ=255)

                     cATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGAt                                                                    <  2:4503895/93‑1 (MQ=255)

                     cATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGAt                                                                    <  1:4025531/93‑1 (MQ=255)

                      aTGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATc                                                                   <  2:5712400/93‑1 (MQ=255)

                      aTGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATc                                                                   <  1:5476501/93‑1 (MQ=255)

                       tGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCt                                                                  >  2:3201823/1‑93 (MQ=255)

                        gTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTg                                                                 <  1:6360564/93‑1 (MQ=255)

                          aCTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGt                                                               <  1:5802830/93‑1 (MQ=255)

                          aCTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGt                                                               <  1:2218791/93‑1 (MQ=255)

                          aCTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGt                                                               <  2:5521141/93‑1 (MQ=255)

                           cTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGtt                                                              <  2:4973281/93‑1 (MQ=255)

                            tCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGttt                                                             <  1:4341210/93‑1 (MQ=255)

                             cAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGtttt                                                            <  2:3896243/93‑1 (MQ=255)

                              aaCGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTT‑ACGATCTGGTTTTGc                                                          >  2:4640403/1‑93 (MQ=255)

                               aCGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGc                                                          >  1:1478595/1‑93 (MQ=255)

                                cGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCa                                                         <  1:3838614/93‑1 (MQ=255)

                                    cGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAat                                                     <  1:4458958/93‑1 (MQ=255)

                                     gCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAata                                                    >  1:4171524/1‑93 (MQ=255)

                                     gCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAata                                                    <  1:3906978/93‑1 (MQ=255)

                                      cccTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAatat                                                   <  2:1630888/93‑1 (MQ=255)

                                      cccTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAatat                                                   <  1:1005798/93‑1 (MQ=255)

                                      cccTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAatat                                                   >  2:675931/1‑93 (MQ=255)

                                       ccTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAAtatt                                                  >  1:5875037/1‑93 (MQ=255)

                                       ccTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAAtatt                                                  >  2:410435/1‑93 (MQ=255)

                                        cTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAAtatta                                                 <  1:6441007/93‑1 (MQ=255)

                                        cTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAAtatta                                                 >  1:5404778/1‑93 (MQ=255)

                                         ttATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAAtattat                                                >  2:6624190/1‑93 (MQ=255)

                                         ctATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAAtattat                                                <  1:1566183/92‑1 (MQ=255)

                                          tATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATattatt                                               >  2:6040927/1‑93 (MQ=255)

                                          tATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATattatt                                               <  2:4054685/93‑1 (MQ=255)

                                          tATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATattatt                                               <  2:3565976/93‑1 (MQ=255)

                                          tATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATattatt                                               >  1:1621991/1‑93 (MQ=255)

                                           aTCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATAttattt                                              <  1:6040069/93‑1 (MQ=255)

                                            tCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATAttattta                                             <  2:1791852/93‑1 (MQ=255)

                                            tCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATAttattta                                             <  1:3363158/93‑1 (MQ=255)

                                             cGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATAttatttat                                            >  2:639212/1‑93 (MQ=255)

                                              gCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATtatttatt                                           <  2:5649167/93‑1 (MQ=255)

                                                aTTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGc                                         >  2:2623624/1‑93 (MQ=255)

                                                  tACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGCATATTATTTATTGccc                                       >  2:24731/1‑93 (MQ=255)

                                                  tACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGccc                                       <  1:2070667/93‑1 (MQ=255)

                                                  tACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGccc                                       <  2:2868520/93‑1 (MQ=255)

                                                    cccGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTCTTGCCAgg                                     >  1:3897562/1‑93 (MQ=255)

                                                     ccGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGa                                    >  1:3497101/1‑93 (MQ=255)

                                                     ccGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGa                                    <  1:5741906/93‑1 (MQ=255)

                                                     ccGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGa                                    >  1:2339094/1‑93 (MQ=255)

                                                     ccGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGa                                    <  2:1078346/93‑1 (MQ=255)

                                                     ccGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGCTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGa                                    <  2:4822016/93‑1 (MQ=255)

                                                      cGTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAg                                   >  2:2103131/1‑93 (MQ=255)

                                                       gTGGCGATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGCATATTATTTATTGCCCGGAGc                                  >  1:5965001/1‑93 (MQ=255)

                                                            gATCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTg                             >  1:3238692/1‑93 (MQ=255)

                                                             aTCTCTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGa                            >  2:5281653/1‑93 (MQ=255)

                                                              tctcTTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGaa                           >  2:4295368/1‑93 (MQ=255)

                                                               ctctTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAg                          <  2:6455275/93‑1 (MQ=255)

                                                                tctTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGc                         >  1:2825579/1‑93 (MQ=255)

                                                                tctTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGc                         <  2:3749439/93‑1 (MQ=255)

                                                                 ctTTTACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCt                        <  2:1609134/93‑1 (MQ=255)

                                                                   tttACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGa                      >  1:2161876/1‑93 (MQ=255)

                                                                    ttACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGaa                     >  2:3834869/1‑93 (MQ=255)

                                                                     tACATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAAt                    >  2:5793675/1‑93 (MQ=255)

                                                                      aCATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATc                   >  1:4070061/1‑93 (MQ=255)

                                                                      aCATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATc                   >  1:2606247/1‑93 (MQ=255)

                                                                      aCATTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATc                   <  2:1673568/93‑1 (MQ=255)

                                                                        aTTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATCtt                 >  2:4207329/1‑93 (MQ=255)

                                                                        aTTCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATCtt                 >  2:5909804/1‑93 (MQ=255)

                                                                         ttCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATCTTg                <  2:2767449/93‑1 (MQ=255)

                                                                          tCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATCTTGa               <  1:5065640/93‑1 (MQ=255)

                                                                          tCATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATCTTGa               <  2:3052058/93‑1 (MQ=255)

                                                                           cATGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATCTTGAc              >  2:1218353/1‑93 (MQ=255)

                                                                            aTGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATCTTGACt             >  1:4543610/1‑93 (MQ=255)

                                                                            aTGCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATCTTGACt             >  1:312602/1‑93 (MQ=255)

                                                                              gCTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATCTTGACTgg           <  2:3115734/93‑1 (MQ=255)

                                                                               cTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATCTTGACTGGc          >  1:5090251/1‑93 (MQ=255)

                                                                               cTGACGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATCTTGACTGGc          <  1:1754270/93‑1 (MQ=255)

                                                                                   cGATAAATGCTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATCTTGACTGGCAggg      <  2:1510202/93‑1 (MQ=255)

                                                                                   cGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATCTTGACTGGCAggg      >  2:6074081/1‑93 (MQ=255)

                                                                                   cGATAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATCTTGACTGGCAggg      <  2:2703789/93‑1 (MQ=255)

                                                                                   cGATAAATACTCCCACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATCTTGACTGGCAggg      <  2:1563230/93‑1 (MQ=255)

                                                                                   cGACAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTCCCCGGAGCGTCTGAAGCTGAATCTTGACTCGCAggg      <  1:4765992/93‑1 (MQ=255)

                                                                                     aTAAATACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATCTTGACTGGCAggggg    >  1:2714151/1‑93 (MQ=255)

                                                                                      tAAATACTCCTAAGCTTCCGTTAAAGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATCTTGACTGGCAGGGGGc   >  1:472691/1‑93 (MQ=255)

                                                                                       aaaTACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATCTTGACTGGCAGGGGGCg  <  2:932631/93‑1 (MQ=255)

GTCTGGCGCGGTAATGGCCTGCATGTACTCAACGATCGCCCTTATCGCATTACCCGTGGCGATCTCTTTTACATTCATGCTGACGATAAACACTCCTACGCTTCCGTTAACGATCTGGTTTTGCAGAATATTATTTATTGCCCGGAGCGTCTGAAGCTGAATCTTGACTGGCAGGGGGCG  >  NC_000913/4096356‑4096535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`