Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 573,038 C→T T29I (ACC→ATC)  b4508 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913573,0380CT100.0% 900.3 / NA 242T29I (ACC→ATC) b4508hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (126/116);  total (126/116)

Only 100 of 246 total aligned reads displayed.

AATGAATGATGTTTGAGTTTAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGACCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTAATACTGTTTTGT  >  NC_000913/572948‑573127
                                                                                          |                                                                                         
 atgaatgaTGTTTGAGTTTAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGa                                                                                        <  1:3057023/93‑1 (MQ=255)
 atgaatgaTGTTTGAGTTTAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGa                                                                                        <  1:1739733/93‑1 (MQ=255)
 atgaatgaTGTTTGAGTTTAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGa                                                                                        >  2:5088048/1‑93 (MQ=255)
  tgaatgaTGTTTGAGTTTAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGAt                                                                                       >  1:5408577/1‑93 (MQ=255)
  tgaatgaTGTTTGAGTTTAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGAt                                                                                       <  1:2563466/93‑1 (MQ=255)
   gaatgaTGTTTGAGTTTAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGAtt                                                                                      >  1:4860674/1‑93 (MQ=255)
   gaatgaTGTTTGAGTTTAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGAtt                                                                                      <  1:1285605/93‑1 (MQ=255)
   gaatgaTGTTTGAGTTTAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGAtt                                                                                      <  1:6050168/93‑1 (MQ=255)
   gaatgaTGTTTGAGTTTAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGAtt                                                                                      >  2:5336872/1‑93 (MQ=255)
   gaatgaTGTTTGAGTTTAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGAtt                                                                                      >  2:1494406/1‑93 (MQ=255)
   gaatgaTGTTTGAGTTTAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGAtt                                                                                      >  1:4611020/1‑93 (MQ=255)
    aatgaTGTTTGAGTTTAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTa                                                                                     >  2:4278231/1‑93 (MQ=255)
        atgTTTGAGTTTAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGa                                                                                 >  2:3856247/1‑93 (MQ=255)
        atgTTTGAGTTTAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGa                                                                                 <  2:2197916/93‑1 (MQ=255)
          gTTTGAGTTTAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAAt                                                                               >  2:1173735/1‑93 (MQ=255)
            ttGAGTTTAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATAc                                                                             <  2:140934/93‑1 (MQ=255)
                gTTTAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTgaa                                                                         <  1:3202845/93‑1 (MQ=255)
                gTTTAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTgaa                                                                         <  1:2619839/93‑1 (MQ=255)
                 tttAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTgaag                                                                        >  2:887545/1‑93 (MQ=255)
                 tttAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTgaag                                                                        >  2:1576912/1‑93 (MQ=255)
                 tttAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTgaag                                                                        <  2:1996678/93‑1 (MQ=255)
                  ttAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTgaaga                                                                       >  1:4194122/1‑93 (MQ=255)
                    aaTATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAAt                                                                     <  1:894089/93‑1 (MQ=255)
                    aaTATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAAt                                                                     >  2:3286750/1‑93 (MQ=255)
                    aaTATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAAt                                                                     >  1:1397394/1‑93 (MQ=255)
                     atatGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCAGTTCTGTTTTGATCGATTACCGAATACTGAAGAAtt                                                                    >  2:946252/1‑93 (MQ=255)
                      tatGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTa                                                                   >  1:5565241/1‑93 (MQ=255)
                      tatGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCGGCGCTTATATCGTTCCCCCGGTTCTGTTTTGATCTATTACCGAATACTGAAGAATTa                                                                   <  1:3120504/93‑1 (MQ=255)
                       atGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTAc                                                                  <  1:4730211/93‑1 (MQ=255)
                          gCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCGCCGGTTATGTTTTGATCGATTACCGAATACTGAAGAATTACGca                                                               >  2:6631362/1‑92 (MQ=255)
                            aGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCaa                                                             >  1:5864405/1‑93 (MQ=255)
                             gAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCaaa                                                            >  2:2944611/1‑93 (MQ=255)
                              aaCTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCaaaa                                                           >  2:5597538/1‑93 (MQ=255)
                               aCTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAAc                                                          <  1:2404051/93‑1 (MQ=255)
                                cttcttCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAAcc                                                         >  1:6144126/1‑93 (MQ=255)
                                cttcttCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGACTACCGAATACTGAAGAATTACGCCAAAAcc                                                         >  1:1146621/1‑93 (MQ=255)
                                 ttcttcGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAAccc                                                        >  1:706772/1‑93 (MQ=255)
                                  tcttcGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCt                                                       >  2:4637002/1‑93 (MQ=255)
                                    ttcGCCACCGCTGGGGGCGTCTGCGCTTATGTCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGa                                                     <  2:1209043/93‑1 (MQ=255)
                                       gCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGAcag                                                  <  2:1727371/93‑1 (MQ=255)
                                         cACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGAcagga                                                <  1:2177934/93‑1 (MQ=255)
                                         cACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGAcagga                                                <  1:1060132/93‑1 (MQ=255)
                                          aCCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGAcaggag                                               >  1:5229397/1‑93 (MQ=255)
                                          aCCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGAcaggag                                               >  2:132667/1‑93 (MQ=255)
                                           ccGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAATCCTGAcatgaga                                              >  1:3816785/1‑92 (MQ=255)
                                            cGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGAcaggagca                                             <  1:331927/93‑1 (MQ=255)
                                            cGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGAcaggagca                                             <  1:3023673/93‑1 (MQ=255)
                                             gCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGAcaggagcag                                            <  2:5980252/93‑1 (MQ=255)
                                             gCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGAcaggagcag                                            <  2:4091133/93‑1 (MQ=255)
                                             gCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGAcaggagcag                                            >  2:2678504/1‑93 (MQ=255)
                                             gCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTAAGCCAAAACAATGAcacgaccag                                            >  1:957751/1‑93 (MQ=255)
                                                gggggCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGAcaggagcaggag                                         >  2:5666312/1‑93 (MQ=255)
                                                 ggggCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGt                                        >  1:6536956/1‑93 (MQ=255)
                                                  gggCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTa                                       <  2:4521157/93‑1 (MQ=255)
                                                   ggCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTAt                                      <  2:3396912/93‑1 (MQ=255)
                                                    gCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATg                                     <  1:1040805/93‑1 (MQ=255)
                                                    gCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATg                                     >  1:477768/1‑93 (MQ=255)
                                                      gTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGaa                                   >  2:1874724/1‑93 (MQ=255)
                                                      gTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGaa                                   <  2:2912957/93‑1 (MQ=255)
                                                      gTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGaa                                   >  2:2358583/1‑93 (MQ=255)
                                                          gcgcTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCa                               >  1:2094246/1‑93 (MQ=255)
                                                            gcTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCaga                             >  1:692447/1‑93 (MQ=255)
                                                            gcTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCaga                             <  2:6304560/93‑1 (MQ=255)
                                                            gcTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCaga                             <  1:3513722/93‑1 (MQ=255)
                                                             cTTATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCagag                            <  1:6194666/93‑1 (MQ=255)
                                                              ttATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAgaga                           <  2:5791373/93‑1 (MQ=255)
                                                              ttATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAgaga                           <  2:3623109/93‑1 (MQ=255)
                                                              ttATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAgaga                           >  1:4500260/1‑93 (MQ=255)
                                                              ttATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAgaga                           <  1:1763482/93‑1 (MQ=255)
                                                              ttATATCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAgaga                           >  2:4730154/1‑93 (MQ=255)
                                                               tataTCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGAt                          >  1:1504450/1‑93 (MQ=255)
                                                               tataTCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGAt                          <  2:3653667/93‑1 (MQ=255)
                                                                atatCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATa                         <  2:4840898/93‑1 (MQ=255)
                                                                 tatCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATaa                        >  2:1904315/1‑93 (MQ=255)
                                                                 tatCGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATaa                        >  1:2454188/1‑93 (MQ=255)
                                                                  atCGTTTCCTCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAAc                       <  1:291186/93‑1 (MQ=255)
                                                                    cGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAACCCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACaa                     <  1:6375609/93‑1 (MQ=255)
                                                                    cGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACaa                     <  2:2591613/93‑1 (MQ=255)
                                                                    cGTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACaa                     <  1:1644280/93‑1 (MQ=255)
                                                                     gTTTCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAAt                    >  1:5204861/1‑93 (MQ=255)
                                                                        tCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCaa                 >  1:3834467/1‑93 (MQ=255)
                                                                        tCCCCGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCaa                 >  2:1833759/1‑93 (MQ=255)
                                                                         ccccGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAAc                <  2:5206411/93‑1 (MQ=255)
                                                                          cccGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAACt               >  2:2270583/1‑93 (MQ=255)
                                                                           ccGGTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTa              <  2:677677/93‑1 (MQ=255)
                                                                              gTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAACCCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTAATa           <  2:237779/93‑1 (MQ=255)
                                                                              gTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTAATa           <  2:2055450/93‑1 (MQ=255)
                                                                              gTTCTGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTAATa           <  1:5809088/93‑1 (MQ=255)
                                                                                  tGTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTAATACTGt       <  2:736292/93‑1 (MQ=255)
                                                                                   gTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTAATACTGtt      <  2:3922155/93‑1 (MQ=255)
                                                                                   gTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTAATACTGtt      <  2:2014752/93‑1 (MQ=255)
                                                                                   gTTTTGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTAATACTGtt      <  2:3996290/93‑1 (MQ=255)
                                                                                    ttttGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTAATACTGttt     <  1:3645486/93‑1 (MQ=255)
                                                                                    ttttGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTAATACTGttt     <  1:5602791/93‑1 (MQ=255)
                                                                                    ttttGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTAATACTGttt     >  1:537083/1‑93 (MQ=255)
                                                                                     tttGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTAATACTGtttt    <  1:2729233/93‑1 (MQ=255)
                                                                                     tttGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTAATACTGtttt    <  2:1452518/93‑1 (MQ=255)
                                                                                      ttGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTAATACTGTTttg   <  2:6417972/93‑1 (MQ=255)
                                                                                      ttGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTAATACTGTTttg   <  1:3927318/93‑1 (MQ=255)
                                                                                       tGATCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTAATACTGTTttgt  <  2:5499798/93‑1 (MQ=255)
                                                                                          |                                                                                         
AATGAATGATGTTTGAGTTTAATATGGCAGAACTTCTTCGCCACCGCTGGGGGCGTCTGCGCTTATATCGTTTCCCCGGTTCTGTTTTGACCGATTACCGAATACTGAAGAATTACGCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTAATACTGTTTTGT  >  NC_000913/572948‑573127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: