BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,572,726	T→C	P341P (CCT→CCC)	yjiU →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,572,726	0	T	C	99.6%	741.0 / ‑4.8	232	P341P (CCT→CCC)	yjiU	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (125/105); total (125/107)
Fisher's exact test for biased strand distribution p-value = 4.59e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.96e-01

Only 100 of 240 total aligned reads displayed.

CCATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGG  >  NC_000913/4572636‑4572817

ccATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGTAATGTTGTTGTTCCGCGGATTCATGCGTCGCCCCaa                                                                                           >  1:4190315/1‑93 (MQ=255)

ccATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCaa                                                                                           >  2:2727367/1‑93 (MQ=255)

 cATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCaaa                                                                                          <  2:4993123/93‑1 (MQ=255)

  aTTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAAc                                                                                         >  2:4264810/1‑93 (MQ=255)

  aTTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAAc                                                                                         <  2:6185766/93‑1 (MQ=255)

    tATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACgg                                                                                       >  2:6023927/1‑93 (MQ=255)

      tCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAATCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGACGGCCCAAACGCAc                                                                                     >  1:6164238/1‑93 (MQ=255)

      tCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGAc                                                                                     <  1:6657636/93‑1 (MQ=255)

      tCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGAc                                                                                     >  2:5437518/1‑93 (MQ=255)

      tCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGAc                                                                                     >  2:2611920/1‑93 (MQ=255)

       cTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACt                                                                                    <  2:5269747/93‑1 (MQ=255)

        ttAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTa                                                                                   >  1:5247326/1‑93 (MQ=255)

        ttAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTa                                                                                   >  2:1341796/1‑93 (MQ=255)

        tgaaGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAGTTCATGCGTCGCCCCAAACGGACTa                                                                                   >  2:6483495/3‑93 (MQ=255)

          aaGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAAc                                                                                 >  2:6502299/1‑93 (MQ=255)

          aaGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAAc                                                                                 <  2:2245346/93‑1 (MQ=255)

           aGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCACACGGACTAACa                                                                                >  1:3142467/1‑93 (MQ=255)

           aGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACa                                                                                >  2:1568769/1‑93 (MQ=255)

            gCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAg                                                                               >  1:2300943/1‑93 (MQ=255)

            gCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAg                                                                               >  1:2030048/1‑93 (MQ=255)

              cTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGcc                                                                             <  2:5939036/93‑1 (MQ=255)

               tGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCt                                                                            >  1:4143401/1‑93 (MQ=255)

               tGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCt                                                                            >  1:5776313/1‑93 (MQ=255)

               tGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCt                                                                            <  1:4923509/93‑1 (MQ=255)

                gAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTg                                                                           <  2:3636718/93‑1 (MQ=255)

                gAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTg                                                                           >  2:2430067/1‑93 (MQ=255)

                 aaGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGCAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTgg                                                                          >  2:463748/1‑93 (MQ=255)

                   gtgtTTAATGAAAACGGCGGCCCCCTTAAGCTCTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGaa                                                                        >  2:4014481/1‑93 (MQ=255)

                    tgtTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGaaa                                                                       >  2:5772371/1‑93 (MQ=255)

                     gtTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAac                                                                      <  1:784890/93‑1 (MQ=255)

                     gtTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAac                                                                      >  1:447975/1‑93 (MQ=255)

                       ttAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAacac                                                                    >  1:1289854/1‑93 (MQ=255)

                         aaTGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAg                                                                  >  1:603998/1‑93 (MQ=255)

                         aaTGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAg                                                                  <  2:5980812/93‑1 (MQ=255)

                         aaTGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAg                                                                  <  1:3724705/93‑1 (MQ=255)

                           tGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAggg                                                                <  2:6232310/93‑1 (MQ=255)

                           tGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAggg                                                                >  2:5670863/1‑93 (MQ=255)

                           tGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAggg                                                                >  1:3995889/1‑93 (MQ=255)

                            gAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAgggg                                                               <  1:5005372/93‑1 (MQ=255)

                             aaaaCGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGc                                                              <  2:4886849/93‑1 (MQ=255)

                              aaaCGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCt                                                             >  1:2137147/1‑93 (MQ=255)

                                aCGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTgg                                                           >  2:1037686/1‑93 (MQ=255)

                                 cggcggCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGggtggt                                                          >  2:3733587/1‑93 (MQ=255)

                                 cggcggCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGt                                                          <  2:4834980/93‑1 (MQ=255)

                                  ggcggcCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGtt                                                         <  1:3199115/93‑1 (MQ=255)

                                    cggcCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGTAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCa                                                       <  1:4760066/93‑1 (MQ=255)

                                    cggcCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCa                                                       <  2:4063226/93‑1 (MQ=255)

                                    cggcCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCa                                                       <  2:1240408/93‑1 (MQ=255)

                                     ggcCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAg                                                      <  1:110632/93‑1 (MQ=255)

                                      gcCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAgg                                                     >  1:2199384/1‑93 (MQ=255)

                                      gcCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAgg                                                     >  2:4619723/1‑93 (MQ=255)

                                        ccccTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAggtt                                                   >  2:4303473/1‑93 (MQ=255)

                                        ccccTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAggtt                                                   >  1:4939860/1‑93 (MQ=255)

                                        ccccTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAgggt                                                   >  1:2789400/1‑91 (MQ=255)

                                         cccTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAggttg                                                  >  1:5624040/1‑93 (MQ=255)

                                         cccTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAggttg                                                  <  1:3427663/93‑1 (MQ=255)

                                         cccTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGGTCCggctg                                                  >  1:5742932/1‑93 (MQ=255)

                                           cTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAggttggt                                                <  1:2877126/93‑1 (MQ=255)

                                            ttAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAggttggtt                                               <  2:2629647/93‑1 (MQ=255)

                                            ttAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAggttggtt                                               <  2:4229630/93‑1 (MQ=255)

                                            ttAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAggttggtt                                               >  1:1721175/1‑93 (MQ=255)

                                            ttAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGGTCAggttggtt                                               >  2:1177229/1‑93 (MQ=255)

                                             tAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTa                                              >  1:2974880/1‑93 (MQ=255)

                                             tAAGCTTTCGGAAACGGTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTa                                              >  1:6727432/1‑93 (MQ=255)

                                                gCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCa                                           >  1:502394/1‑93 (MQ=255)

                                                gCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCa                                           >  2:355315/1‑93 (MQ=255)

                                                 cTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAg                                          <  2:369780/93‑1 (MQ=255)

                                                 cTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAg                                          <  2:3909770/93‑1 (MQ=255)

                                                 cTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAg                                          <  2:4533190/93‑1 (MQ=255)

                                                  tttCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAgg                                         <  2:877827/93‑1 (MQ=255)

                                                  tttCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAgg                                         <  2:4663689/93‑1 (MQ=255)

                                                  tttCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAgg                                         >  2:2835338/1‑93 (MQ=255)

                                                   ttCTGAAATGTTGTTGTTCCGGTAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTGGGTTACCAggg                                        <  1:1035278/93‑1 (MQ=255)

                                                   ttCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAggg                                        <  2:5927861/93‑1 (MQ=255)

                                                   ttCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAggg                                        <  1:3888764/93‑1 (MQ=255)

                                                      tGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCt                                     <  1:3626461/93‑1 (MQ=255)

                                                       gAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTg                                    >  2:2344041/1‑93 (MQ=255)

                                                         aaTGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGGTCAGGTTGGTTACCAGGGGCTGga                                  >  1:2720168/1‑93 (MQ=255)

                                                               gttgttCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAAt                            >  2:2914791/1‑93 (MQ=255)

                                                                ttgttCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATa                           <  2:2227345/93‑1 (MQ=255)

                                                                ttgttCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATa                           >  2:1494436/1‑93 (MQ=255)

                                                                    tCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATa                       >  1:1168915/1‑93 (MQ=255)

                                                                     ccGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATaa                      <  2:957499/93‑1 (MQ=255)

                                                                       gggAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCGGGTTGGTTACCAGGGGCTGGAGAAAATACATAaga                    <  2:6323480/93‑1 (MQ=255)

                                                                        ggAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAagag                   >  1:1360930/1‑93 (MQ=255)

                                                                        ggAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAagag                   >  1:193990/1‑93 (MQ=255)

                                                                         gAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGc                  >  1:2325271/1‑93 (MQ=255)

                                                                          aaTTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGcc                 >  1:349779/1‑93 (MQ=255)

                                                                          aaTTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGcc                 <  2:3499815/93‑1 (MQ=255)

                                                                            ttCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGcccc               <  2:3801082/93‑1 (MQ=255)

                                                                            ttCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGcccc               <  2:1887735/93‑1 (MQ=255)

                                                                               ctGCGTGGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGCTCAGGATGGTTACCAGGGGCTTGAGCAAATACATAAGAGCACCTTg            >  1:2594188/2‑93 (MQ=255)

                                                                                  cGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCACCTTGCAc         <  1:6571045/93‑1 (MQ=255)

                                                                                   gTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACt        <  1:6401945/93‑1 (MQ=255)

                                                                                   gTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACt        <  2:6424348/93‑1 (MQ=255)

                                                                                    tCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTg       >  2:725693/1‑93 (MQ=255)

                                                                                     cGCCCCAAACGGACTAGCAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTgg      <  2:1546971/93‑1 (MQ=255)

                                                                                      gCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGc     >  1:2709479/1‑93 (MQ=255)

                                                                                      gCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGc     >  2:2385523/1‑93 (MQ=255)

                                                                                         cTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAgg  <  2:3376119/93‑1 (MQ=255)

CCATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGG  >  NC_000913/4572636‑4572817

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`