Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 689,228 T→C S293G (AGC→GGC)  lnt ← apolipoprotein N‑acyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913689,2280TC99.6% 748.4 / ‑5.7 234S293G (AGC→GGC) lntapolipoprotein N‑acyltransferase
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (104/129);  total (105/129)
Fisher's exact test for biased strand distribution p-value = 4.49e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01

Only 100 of 240 total aligned reads displayed.

ACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAA  >  NC_000913/689139‑689317
                                                                                         |                                                                                         
aCCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCAcc                                                                                        <  2:5141832/93‑1 (MQ=255)
aCCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCAcc                                                                                        >  1:6222925/1‑93 (MQ=255)
aCCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCAcc                                                                                        <  1:2683969/93‑1 (MQ=255)
 ccTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCt                                                                                       <  1:2016629/93‑1 (MQ=255)
  cTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCtt                                                                                      >  1:1640443/1‑93 (MQ=255)
      tcccAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATc                                                                                  <  2:1510619/92‑1 (MQ=255)
      aCCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATc                                                                                  <  1:3637409/93‑1 (MQ=255)
      aCCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATc                                                                                  <  2:726389/93‑1 (MQ=255)
          aGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGc                                                                              >  1:4304385/1‑93 (MQ=255)
           gCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACGATCCCGGTTACCAGCGAGCCACCTTTATCACGCa                                                                             >  2:3908976/1‑93 (MQ=255)
            cGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCaa                                                                            <  2:2511010/93‑1 (MQ=255)
             gTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAAc                                                                           <  1:6132757/93‑1 (MQ=255)
             gTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAAc                                                                           >  1:1064557/1‑93 (MQ=255)
             gTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGACACCTTTATCACGCAAc                                                                           >  2:3533336/1‑93 (MQ=255)
                atgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCa                                                                        >  1:2192878/1‑93 (MQ=255)
                atgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCa                                                                        >  1:2315376/1‑93 (MQ=255)
                 tgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCAc                                                                       <  1:4866050/93‑1 (MQ=255)
                   atgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCg                                                                     >  2:149818/1‑93 (MQ=255)
                    tgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGt                                                                    >  1:393087/1‑93 (MQ=255)
                     ggTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTc                                                                   <  1:410818/93‑1 (MQ=255)
                      gtgtTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTcc                                                                  <  1:694959/93‑1 (MQ=255)
                         ttgtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGt                                                               <  2:1629305/93‑1 (MQ=255)
                         gtgtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGt                                                               <  1:5304859/92‑1 (MQ=255)
                           ttAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGc                                                             <  2:808359/92‑1 (MQ=255)
                           gtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGc                                                             <  2:4127533/93‑1 (MQ=255)
                             aGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCtt                                                           <  2:6506204/93‑1 (MQ=255)
                             aGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCtt                                                           <  1:5688210/93‑1 (MQ=255)
                             aGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCtt                                                           >  1:5530655/1‑93 (MQ=255)
                              ggTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCttt                                                          >  2:1187547/1‑93 (MQ=255)
                              ggTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCttt                                                          >  1:5569700/1‑93 (MQ=255)
                               gTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTg                                                         >  1:1766595/1‑93 (MQ=255)
                                 aTCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAg                                                       >  1:3541288/1‑93 (MQ=255)
                                 aTCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAg                                                       <  1:5432435/93‑1 (MQ=255)
                                 aTCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAg                                                       <  1:578488/93‑1 (MQ=255)
                                  tCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAgg                                                      >  2:5413541/1‑93 (MQ=255)
                                    gTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGaa                                                    >  2:4511580/1‑93 (MQ=255)
                                    gTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGaa                                                    <  2:5952701/93‑1 (MQ=255)
                                      aGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACg                                                  >  2:1072211/1‑93 (MQ=255)
                                      aGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACg                                                  <  1:2296101/93‑1 (MQ=255)
                                       gCGTTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACgg                                                 <  2:5861227/93‑1 (MQ=255)
                                       gCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACgg                                                 >  1:4980673/1‑93 (MQ=255)
                                        cGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGt                                                >  2:1673973/1‑93 (MQ=255)
                                         ggTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGtt                                               <  1:4560082/93‑1 (MQ=255)
                                         ggTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGtt                                               >  2:5599870/1‑93 (MQ=255)
                                          gTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTg                                              >  2:6062340/1‑93 (MQ=255)
                                          gTTCTGCTTATTGAGAAGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCACCTCACCGTCCAGTGCTTTGAGGAACGGTTg                                              >  2:980382/1‑93 (MQ=255)
                                           ttCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGc                                             <  2:5005486/93‑1 (MQ=255)
                                            tCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCt                                            <  1:3420771/93‑1 (MQ=255)
                                             cTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTg                                           <  2:2663788/93‑1 (MQ=255)
                                              tGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGa                                          <  1:304777/93‑1 (MQ=255)
                                               gCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGAt                                         <  2:2131412/93‑1 (MQ=255)
                                                cTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGTCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGAtt                                        >  1:4639401/1‑93 (MQ=255)
                                                cTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGAtt                                        <  1:4185187/93‑1 (MQ=255)
                                                   aTTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAAt                                     >  2:1791138/1‑93 (MQ=255)
                                                      gagaCGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTc                                  <  1:5152389/93‑1 (MQ=255)
                                                      gagaCGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTc                                  <  1:2218784/93‑1 (MQ=255)
                                                       agaCGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTcc                                 >  2:2817821/1‑93 (MQ=255)
                                                        gaCGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCa                                >  1:1319990/1‑93 (MQ=255)
                                                        gaCGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCa                                >  2:5769463/1‑93 (MQ=255)
                                                        gaCGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCa                                <  1:5189140/93‑1 (MQ=255)
                                                           gcgcgGCGACAATCCCGGTTTCCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGAt                             <  2:2077118/93‑1 (MQ=255)
                                                            cgcgTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATc                            <  2:2053336/93‑1 (MQ=255)
                                                            cgcgTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATc                            <  2:1723849/93‑1 (MQ=255)
                                                            cgcgGCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATc                            <  2:5174548/93‑1 (MQ=255)
                                                             gcgTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCg                           >  2:678518/1‑93 (MQ=255)
                                                             gcgTCAACAATCCTGGTTACCAGCGAGCCCCCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCg                           <  1:715013/93‑1 (MQ=255)
                                                              cgTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCgg                          <  1:1282840/93‑1 (MQ=255)
                                                                tCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGtt                        <  2:2412385/93‑1 (MQ=255)
                                                                tCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGtt                        <  2:5234998/93‑1 (MQ=255)
                                                                tCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGtt                        <  2:3706195/93‑1 (MQ=255)
                                                                  gACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTAt                      <  2:3445462/93‑1 (MQ=255)
                                                                   aCAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATc                     >  2:362583/1‑93 (MQ=255)
                                                                    cAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCg                    >  2:2991422/1‑93 (MQ=255)
                                                                    cAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCg                    <  2:3333433/93‑1 (MQ=255)
                                                                      aTCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGcc                  <  1:941024/93‑1 (MQ=255)
                                                                      aTCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGcc                  >  1:1682462/1‑93 (MQ=255)
                                                                      aTCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGcc                  <  1:2757254/93‑1 (MQ=255)
                                                                      aTCCCGGTTACCAGCGAGACACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGcc                  >  2:6583954/1‑93 (MQ=255)
                                                                       tCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGCGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCg                 >  1:506930/1‑93 (MQ=255)
                                                                        cccGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGa                >  1:135508/1‑93 (MQ=255)
                                                                         ccGTTTGCCAGCGAGCCACCTTTACCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTCCCAGACCGGTTATCGCCGAc               <  1:1219050/93‑1 (MQ=255)
                                                                         ccGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGAc               <  2:6260505/93‑1 (MQ=255)
                                                                         ccGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGAc               <  1:3992788/93‑1 (MQ=255)
                                                                         ccGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGAc               <  2:2392967/93‑1 (MQ=255)
                                                                          cGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACt              >  2:1871650/1‑93 (MQ=255)
                                                                          cGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACt              >  1:2436522/1‑93 (MQ=255)
                                                                           ggTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTc             <  1:3681365/93‑1 (MQ=255)
                                                                           ggTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTc             <  2:4335072/93‑1 (MQ=255)
                                                                           ggTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGATATCGCCGACTc             >  1:4482174/1‑93 (MQ=255)
                                                                            gTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTcc            <  2:5543233/93‑1 (MQ=255)
                                                                            gTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTcc            <  2:5283580/93‑1 (MQ=255)
                                                                            gTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTcc            >  1:5940449/1‑93 (MQ=255)
                                                                            gTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTcc            >  2:6533835/1‑93 (MQ=255)
                                                                             ttACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCg           <  1:3238319/93‑1 (MQ=255)
                                                                             ttACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCg           >  1:6527130/1‑93 (MQ=255)
                                                                              tACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAGCGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCgc          >  2:4604562/1‑92 (MQ=255)
                                                                              tACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCgg          <  2:4839388/93‑1 (MQ=255)
                                                                              tACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCgg          >  1:1444731/1‑93 (MQ=255)
                                                                                  aGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAg      <  1:3004588/93‑1 (MQ=255)
                                                                                    cGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGAt    <  1:1816954/93‑1 (MQ=255)
                                                                                         |                                                                                         
ACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAA  >  NC_000913/689139‑689317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: