BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	780,918	T→C	intergenic (+43/‑390)	lysQ → / → nadA	tRNA‑Lys/quinolinate synthetase A protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	780,918	0	T	C	100.0%	526.1 / NA	212	intergenic (+43/‑390)	lysQ/nadA	tRNA‑Lys/quinolinate synthetase A protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (114/98); total (114/98)

Only 100 of 214 total aligned reads displayed.

TGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGC  >  NC_000913/780828‑780999

 gACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACt                                                                                <  2:6274168/93‑1 (MQ=21)

  aCTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTc                                                                               <  1:5328311/93‑1 (MQ=21)

    ttttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCCCCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCaa                                                                             <  2:725019/93‑1 (MQ=16)

     tttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCaaa                                                                            <  1:6312646/93‑1 (MQ=21)

     tttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCaaa                                                                            <  1:1788469/93‑1 (MQ=21)

       tAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGa                                                                          <  2:3819438/93‑1 (MQ=21)

         aTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGAtt                                                                        <  2:4490363/93‑1 (MQ=18)

         aTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGAtt                                                                        <  2:5357195/93‑1 (MQ=21)

          tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTc                                                                       >  1:3989351/1‑93 (MQ=18)

           cAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCg                                                                      >  2:648156/1‑93 (MQ=18)

           cAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCg                                                                      >  1:5952842/1‑93 (MQ=18)

            aaTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGa                                                                     >  1:2690312/1‑93 (MQ=18)

            aaTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGa                                                                     >  2:2154537/1‑93 (MQ=18)

            aaTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGa                                                                     >  1:4214194/1‑93 (MQ=18)

             aTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGaa                                                                    >  1:2877949/1‑93 (MQ=18)

              ttGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAAc                                                                   <  1:4810286/93‑1 (MQ=21)

              ttGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAAc                                                                   <  1:4413298/93‑1 (MQ=21)

                ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCt                                                                 <  2:4163252/93‑1 (MQ=21)

                 gTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTg                                                                <  2:3357106/93‑1 (MQ=21)

                 gTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTg                                                                <  2:1592015/93‑1 (MQ=18)

                  tCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTgc                                                               >  2:4928425/1‑93 (MQ=18)

                    gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTgcag                                                             >  1:611216/1‑93 (MQ=18)

                     cAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTgcaga                                                            >  2:2236519/1‑92 (MQ=18)

                      aGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTgcagca                                                           <  2:5300828/93‑1 (MQ=21)

                      aGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTgcagca                                                           <  2:4397192/93‑1 (MQ=21)

                      aGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTgcagca                                                           >  1:5125064/1‑93 (MQ=18)

                       ggTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGcagcag                                                          >  2:2393671/1‑93 (MQ=18)

                       ggTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGcagcag                                                          <  1:4506383/93‑1 (MQ=18)

                       ggTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGcagcag                                                          >  1:4532836/1‑93 (MQ=18)

                       ggTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGcagcag                                                          >  1:4586322/1‑93 (MQ=18)

                        gTTCGAATGCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAgg                                                         >  1:6545503/1‑93 (MQ=16)

                         ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGt                                                        >  1:3321131/1‑93 (MQ=18)

                         ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGt                                                        <  1:1419306/93‑1 (MQ=18)

                         ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGt                                                        <  1:6153460/93‑1 (MQ=21)

                          tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGtt                                                       >  2:5223104/1‑93 (MQ=18)

                           cGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGttt                                                      <  2:817345/93‑1 (MQ=18)

                            gAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTttg                                                     <  1:2285698/93‑1 (MQ=21)

                             aaTCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTttga                                                    <  2:6009650/93‑1 (MQ=21)

                             aaTCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTttga                                                    <  1:2619613/93‑1 (MQ=18)

                               tCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGGttgagt                                                  >  2:1165432/1‑93 (MQ=16)

                                  tGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTttgagttga                                               <  1:1673501/93‑1 (MQ=18)

                                  tGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTttgagttga                                               <  1:1964219/93‑1 (MQ=18)

                                   gCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTttgagttgag                                              >  2:5492981/1‑93 (MQ=18)

                                       gACCCACTAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCa                                          <  1:726924/93‑1 (MQ=16)

                                       gACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCa                                          <  2:3008272/93‑1 (MQ=18)

                                          ccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCg                                       <  2:941461/93‑1 (MQ=18)

                                            accaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGaa                                     >  2:4861339/1‑93 (MQ=18)

                                             ccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGaaa                                    >  2:4071340/1‑93 (MQ=18)

                                             ccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGaaa                                    <  2:4179334/93‑1 (MQ=18)

                                               aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAaaca                                  >  1:5760291/1‑93 (MQ=18)

                                                 tGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAaacaac                                >  2:1939459/1‑93 (MQ=21)

                                                  gTAAAAAAGCGCCCTAAAGTCGTTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACg                               <  1:4648128/93‑1 (MQ=255)

                                                   tAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACgg                              >  1:4868131/1‑93 (MQ=21)

                                                   tAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACgg                              >  2:2886926/1‑93 (MQ=21)

                                                    aaaaaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGa                             >  1:6678101/1‑93 (MQ=21)

                                                      aaaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGc                           <  1:888153/93‑1 (MQ=18)

                                                      aaaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGc                           >  1:5795337/1‑93 (MQ=18)

                                                      aaaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGc                           <  1:2104432/93‑1 (MQ=18)

                                                      aaaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGc                           >  1:3411603/1‑93 (MQ=21)

                                                      aaaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGc                           <  2:6233797/93‑1 (MQ=18)

                                                      aaaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGc                           <  2:2799068/93‑1 (MQ=18)

                                                       aaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGcc                          <  2:5118787/93‑1 (MQ=18)

                                                       aaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGcc                          <  1:1006216/93‑1 (MQ=18)

                                                       aaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGGTTGAGTTGAGCGCAGCGAAACAACGGAGcc                          >  2:5767464/1‑93 (MQ=255)

                                                        aaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCg                         <  2:2936216/93‑1 (MQ=18)

                                                        aaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCg                         >  2:4232608/1‑93 (MQ=21)

                                                        aaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCg                         >  2:4024218/1‑93 (MQ=18)

                                                            gcCCTAAAGGCGCTTTTTGGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTcg                     <  2:4293522/93‑1 (MQ=16)

                                                             cccTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTcgc                    <  2:1547255/93‑1 (MQ=18)

                                                             cccTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTcgc                    >  2:1047462/1‑93 (MQ=21)

                                                               cTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCgcgg                  >  1:3877875/1‑93 (MQ=21)

                                                               cTAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCgcgg                  >  2:2948910/1‑93 (MQ=21)

                                                                tAAAGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCgcggc                 <  2:1896597/93‑1 (MQ=18)

                                                                 aaaGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCgcggcg                >  1:1509385/1‑93 (MQ=21)

                                                                 aaaGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCgcggcg                >  1:5018285/1‑93 (MQ=21)

                                                                 aaaGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCgcggcg                >  2:1359170/1‑93 (MQ=18)

                                                                 aaaGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCgcggcg                >  1:5172931/1‑93 (MQ=18)

                                                                  aaGGCGCTTTTTTGCTATCTGCGACACTCTAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCgcggcgc               >  2:5686394/1‑92 (MQ=255)

                                                                  aaGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGa               >  1:2564546/1‑93 (MQ=21)

                                                                   agccgcTTTGTGGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGAc              <  1:6203735/90‑1 (MQ=11)

                                                                   aGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGTGCGCAGCGAAACAACGGAGCCGCTCGCGGCGAc              <  2:3782920/93‑1 (MQ=16)

                                                                   aGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGAc              <  2:3877584/93‑1 (MQ=18)

                                                                   aGGCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGAc              <  2:2425373/93‑1 (MQ=18)

                                                                    ggCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACg             >  1:3649524/1‑93 (MQ=18)

                                                                    ggCGCTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACg             <  2:2621963/93‑1 (MQ=18)

                                                                     gcgcTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACgg            >  1:651545/1‑93 (MQ=21)

                                                                     gcgcTTTTTTGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACgg            >  2:3119543/1‑93 (MQ=21)

                                                                         ttttttGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCg        >  2:5526334/1‑93 (MQ=21)

                                                                         ttttttGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCg        >  2:3814369/1‑93 (MQ=21)

                                                                         tcttttGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCg        >  1:3471553/3‑93 (MQ=255)

                                                                           ttttGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGaa      <  2:472864/93‑1 (MQ=18)

                                                                           ttttGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGaa      >  2:5876283/1‑93 (MQ=18)

                                                                            tttGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAg     >  2:688689/1‑93 (MQ=18)

                                                                             ttGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAgg    >  1:970009/1‑93 (MQ=18)

                                                                             ttGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAgg    <  2:3514541/93‑1 (MQ=18)

                                                                             tggCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAgg    <  2:1229236/91‑1 (MQ=9)

                                                                              tGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGTGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAggg   <  2:6700092/93‑1 (MQ=12)

                                                                              tGCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTAAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAggg   <  1:2790182/93‑1 (MQ=12)

                                                                               gCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGgc  >  1:2020888/1‑93 (MQ=14)

                                                                               gCTATCTGCGACACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGgc  >  1:1239902/1‑93 (MQ=14)

TGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGC  >  NC_000913/780828‑780999

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`