BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	961,334	C→T	D39D (GAC→GAT)	rpsA →	30S ribosomal subunit protein S1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	961,334	0	C	T	100.0%	889.1 / NA	238	D39D (GAC→GAT)	rpsA	30S ribosomal subunit protein S1
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (139/99); total (139/99)

Only 100 of 243 total aligned reads displayed.

AAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGACGAAGTTGA  >  NC_000913/961246‑961423

 agagTCCTTAAAAGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTgg                                                                                      >  2:2081587/1‑93 (MQ=255)

 agagTCCTTAAAAGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTgg                                                                                      >  1:4607426/1‑93 (MQ=255)

 agagTCCTTAAAAGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTgg                                                                                      <  1:3133041/93‑1 (MQ=255)

 agagTCCTTAAAAGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTgg                                                                                      >  1:256847/1‑93 (MQ=255)

  gagTCCTTAAAAGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACACAGACGTAGTACTGGTTGATACTGGt                                                                                     >  2:4236053/1‑93 (MQ=255)

  gagTCCTTAAAAGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGt                                                                                     >  1:4092737/1‑93 (MQ=255)

     tCCTTAAAAGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTg                                                                                  <  1:1624227/93‑1 (MQ=255)

        ttAAAAGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGaaa                                                                               >  2:1106058/1‑93 (MQ=255)

        ttAAAAGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGaaa                                                                               >  1:4025243/1‑93 (MQ=255)

        ttAAAAGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGaaa                                                                               >  2:3272172/1‑93 (MQ=255)

         tAAAAGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAAt                                                                              <  2:6477063/93‑1 (MQ=255)

          aaaaaaaaTCGAACCCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATc                                                                             <  2:1152702/93‑1 (MQ=255)

           aaaGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCt                                                                            >  2:2215144/1‑93 (MQ=255)

           aaaGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCt                                                                            >  1:4449038/1‑93 (MQ=255)

             aGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGa                                                                          >  2:4658964/1‑93 (MQ=255)

              gAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAg                                                                         >  1:5138177/1‑93 (MQ=255)

               aaaTCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGt                                                                        <  2:2692211/93‑1 (MQ=255)

                aaTCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTc                                                                       >  2:3646467/1‑93 (MQ=255)

                aaTCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTc                                                                       <  2:3690531/93‑1 (MQ=255)

                 aTCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTcc                                                                      <  1:2439677/93‑1 (MQ=255)

                 aTCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTcc                                                                      >  1:778318/1‑93 (MQ=255)

                  tCGAACCCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCg                                                                     <  2:3048932/93‑1 (MQ=255)

                  tCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAATACTGGTTGATGCTGGTCTGAAATCTGAGTCCg                                                                     <  2:1961892/93‑1 (MQ=255)

                   cGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGc                                                                    <  2:3507534/93‑1 (MQ=255)

                    gAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGcc                                                                   >  2:314220/1‑93 (MQ=255)

                    gAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGcc                                                                   <  2:3476460/93‑1 (MQ=255)

                      aaCCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCAt                                                                 >  1:2535924/1‑93 (MQ=255)

                      aaCCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCAt                                                                 >  1:944555/1‑93 (MQ=255)

                       aCCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATc                                                                >  1:6282213/1‑93 (MQ=255)

                       aCCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATc                                                                >  2:2669316/1‑93 (MQ=255)

                        cccgcccgGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATcc                                                               <  1:4877438/93‑1 (MQ=255)

                        cccgcccgGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATcc                                                               >  1:3538527/1‑93 (MQ=255)

                         ccgcccgGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATccc                                                              >  2:4409404/1‑93 (MQ=255)

                         ccgcccgGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATccc                                                              <  1:5739238/93‑1 (MQ=255)

                            cccgGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAATACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGc                                                           <  2:3812038/93‑1 (MQ=255)

                            cccgGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGc                                                           >  1:1369599/1‑93 (MQ=255)

                            cccgGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGc                                                           >  2:5767292/1‑93 (MQ=255)

                            cccgGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGc                                                           <  1:266156/93‑1 (MQ=255)

                             ccgGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCt                                                          >  2:1884399/1‑93 (MQ=255)

                             ccgGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCt                                                          <  1:2911780/93‑1 (MQ=255)

                               gggTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGa                                                        >  2:6290204/1‑93 (MQ=255)

                                ggTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAg                                                       >  2:496320/1‑93 (MQ=255)

                                    cTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGt                                                   >  1:4747246/1‑93 (MQ=255)

                                    cTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGt                                                   >  1:3278860/1‑93 (MQ=255)

                                      aTCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTc                                                 >  2:2406223/1‑93 (MQ=255)

                                       tcgttcgtGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCa                                                >  2:3586061/1‑93 (MQ=255)

                                           tcgtGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCaaaaa                                            <  2:5382702/93‑1 (MQ=255)

                                           tcgtGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCaaaaa                                            <  2:6400266/93‑1 (MQ=255)

                                            cgtGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAAc                                           <  2:3408805/93‑1 (MQ=255)

                                             gtGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACg                                          >  2:107148/1‑93 (MQ=255)

                                             gtGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACg                                          >  1:1728579/1‑93 (MQ=255)

                                              tGGCGTTGTTGTTGCTAGTGACAAAGACGTAGTTCTGGTTGATTCTGGTCTTTAATCTGATTTCGCCATTTCGGCTGTTTAGTTCAAAAACGc                                         >  1:6724972/1‑93 (MQ=255)

                                               ggCGTTGTTGTTTCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGcc                                        <  1:4961870/93‑1 (MQ=255)

                                               ggCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGcc                                        <  1:1524084/93‑1 (MQ=255)

                                                 cGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCa                                      >  1:6239500/1‑93 (MQ=255)

                                                  gttgttgttGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAg                                     >  2:3728391/1‑93 (MQ=255)

                                                  gttgttgttGCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAg                                     <  2:811475/93‑1 (MQ=255)

                                                  gttgttgttCCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAg                                     <  1:2307305/93‑1 (MQ=255)

                                                   ttgttgttgCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAgg                                    <  2:1230141/93‑1 (MQ=255)

                                                   ttgttgttgCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAgg                                    >  1:3832623/1‑93 (MQ=255)

                                                   ttgttgttgCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAgg                                    <  2:6644463/93‑1 (MQ=255)

                                                       tgttgCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGa                                <  2:1749454/93‑1 (MQ=255)

                                                         ttgCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGc                              <  1:846364/93‑1 (MQ=255)

                                                         ttgCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGc                              >  2:2555464/1‑93 (MQ=255)

                                                          tgCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCt                             >  1:1572063/1‑93 (MQ=255)

                                                          tgCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCt                             >  1:5073870/1‑93 (MQ=255)

                                                          tgCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCAGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCt                             >  1:6038159/1‑93 (MQ=255)

                                                           gCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTg                            >  1:6450443/1‑93 (MQ=255)

                                                           gCTATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTg                            >  1:555158/1‑93 (MQ=255)

                                                             tATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGa                          <  2:4854201/93‑1 (MQ=255)

                                                             tATCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGa                          <  1:3968813/93‑1 (MQ=255)

                                                              aTCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTGAAAAACGCCCAGGGCGAGCTGGaa                         >  2:5148028/1‑93 (MQ=255)

                                                              aTCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGaa                         >  1:1029574/1‑93 (MQ=255)

                                                               tCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGaaa                        >  2:5482016/1‑93 (MQ=255)

                                                               tCGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGaaa                        >  2:2910538/1‑93 (MQ=255)

                                                                cGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAAt                       >  1:4583704/1‑93 (MQ=255)

                                                                cGACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAAt                       <  2:6119032/93‑1 (MQ=255)

                                                                 gACAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATc                      >  1:2204706/1‑93 (MQ=255)

                                                                  aCAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATcc                     >  2:5726784/1‑93 (MQ=255)

                                                                  aCAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATcc                     <  1:1871048/93‑1 (MQ=255)

                                                                  aCAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATca                     >  2:4506534/1‑92 (MQ=255)

                                                                   cAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCa                    <  2:4762607/93‑1 (MQ=255)

                                                                   cAAAGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCa                    <  2:6581632/93‑1 (MQ=255)

                                                                    aaaGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCag                   >  1:1104613/1‑93 (MQ=255)

                                                                    aaaGACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCag                   >  2:3998681/1‑93 (MQ=255)

                                                                       gACGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCaggta                <  1:1194505/93‑1 (MQ=255)

                                                                         cGTAGTACTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCaggtagg              >  1:2765357/1‑93 (MQ=255)

                                                                          gtagtaCTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCaggtaggt             >  1:5870600/1‑93 (MQ=255)

                                                                          gtagtaCTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCaggtaggt             <  1:332890/93‑1 (MQ=255)

                                                                            agtaCTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTgc           >  1:2078163/1‑92 (MQ=255)

                                                                              taCTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGACg         <  2:5894855/93‑1 (MQ=255)

                                                                                cTGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGACGaa       <  1:1911813/93‑1 (MQ=255)

                                                                                 tGGTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGACGAAg      >  1:5316559/1‑93 (MQ=255)

                                                                                  ggTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGACGAAGt     >  2:3656100/1‑93 (MQ=255)

                                                                                  ggTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGACGAAGt     >  1:1982717/1‑93 (MQ=255)

                                                                                  ggTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGACGAAGt     <  1:5524832/93‑1 (MQ=255)

                                                                                  ggTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGACGAAGt     <  1:6098415/93‑1 (MQ=255)

                                                                                  ggTTGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGACGAAGt     <  1:4423821/93‑1 (MQ=255)

                                                                                    ttGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGACGAAGTTg   <  1:2977480/93‑1 (MQ=255)

                                                                                     tGATGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGACGAAGTTGa  >  2:5988233/1‑93 (MQ=255)

AAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGACGAAGTTGA  >  NC_000913/961246‑961423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`