BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	963,286	A→G	H79R (CAC→CGC)	himD →	integration host factor beta subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	963,286	0	A	G	100.0%	794.1 / NA	241	H79R (CAC→CGC)	himD	integration host factor beta subunit
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (102/139); total (102/139)

Only 100 of 245 total aligned reads displayed.

GCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCACTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCG  >  NC_000913/963196‑963375

gCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCt                                                                                         <  2:4675764/93‑1 (MQ=255)

gCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCt                                                                                         <  2:251398/93‑1 (MQ=255)

gCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCt                                                                                         >  1:1721683/1‑93 (MQ=255)

gCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCt                                                                                         >  1:4313832/1‑93 (MQ=255)

  cgTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCttt                                                                                       <  1:2060613/92‑1 (MQ=255)

  aGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCttt                                                                                       >  1:2107503/1‑93 (MQ=255)

   gTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTa                                                                                      >  2:807566/1‑93 (MQ=255)

   gTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAAAACGTTCCTCGCTTTa                                                                                      >  1:386758/1‑93 (MQ=255)

      tctcTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAAc                                                                                   >  2:376530/1‑93 (MQ=255)

      tctcTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAAc                                                                                   >  2:2062059/1‑93 (MQ=255)

      tctcTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAAc                                                                                   <  1:6388827/93‑1 (MQ=255)

       ctctTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAAcc                                                                                  <  1:4642273/93‑1 (MQ=255)

          tttGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTgg                                                                               >  1:3749991/1‑93 (MQ=255)

           ttGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGt                                                                              <  2:6214940/93‑1 (MQ=255)

             gCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTaa                                                                            <  1:1044443/93‑1 (MQ=255)

              cACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTCGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTaaa                                                                           <  2:3557231/93‑1 (MQ=255)

              cACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTaaa                                                                           <  2:2379210/93‑1 (MQ=255)

               aCTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAg                                                                          <  2:1573044/93‑1 (MQ=255)

                cTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGa                                                                         <  1:2764668/93‑1 (MQ=255)

                cTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGa                                                                         >  1:1124908/1‑93 (MQ=255)

                  aCCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGACCTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAAc                                                                       <  1:5582403/93‑1 (MQ=255)

                  aCCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAAc                                                                       <  1:573033/93‑1 (MQ=255)

                  aCCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAAc                                                                       >  2:5598445/1‑93 (MQ=255)

                   ccGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACt                                                                      >  2:4819640/1‑93 (MQ=255)

                    cgcgCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTg                                                                     >  1:3097138/1‑93 (MQ=255)

                     gcgcACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTCAAGAACTgc                                                                    >  1:2411862/1‑93 (MQ=255)

                     gcgcACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTgc                                                                    <  2:4868902/93‑1 (MQ=255)

                     gcgcACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTgc                                                                    <  2:5930087/93‑1 (MQ=255)

                       gcACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTgcgc                                                                  >  1:5392481/1‑93 (MQ=255)

                        caccacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGcgcg                                                                 <  1:2354523/93‑1 (MQ=255)

                        caccacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGcgcg                                                                 >  1:6588308/1‑93 (MQ=255)

                         accacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGa                                                                <  2:5830685/93‑1 (MQ=255)

                         accacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAAACTGGTAAAGAACTGCGCGa                                                                >  1:1627412/1‑93 (MQ=255)

                          ccacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGAt                                                               <  1:458436/93‑1 (MQ=255)

                          ccacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGAt                                                               <  1:620064/93‑1 (MQ=255)

                          ccacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGAt                                                               >  2:1247868/1‑93 (MQ=255)

                          ccacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGAt                                                               <  1:4405027/93‑1 (MQ=255)

                          ccacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGAt                                                               <  1:4114000/93‑1 (MQ=255)

                          ccacGTACCGGACGTAATCCGAAGACTGGCGATAAAGGAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGAt                                                               <  2:1670913/93‑1 (MQ=255)

                          ccacGTACCGGACGTAATCCGAAGACTGGAGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAATCCTGGTAAAGAACTGCGCGAt                                                               <  1:3424218/93‑1 (MQ=255)

                                aCCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGcc                                                         <  2:4746747/93‑1 (MQ=255)

                                aCCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGcc                                                         >  1:3208329/1‑93 (MQ=255)

                                  cGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCaa                                                       <  2:2812582/93‑1 (MQ=255)

                                  cGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCaa                                                       <  1:3940134/93‑1 (MQ=255)

                                    gACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAata                                                     <  2:2859886/93‑1 (MQ=255)

                                     aCGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAatat                                                    >  1:5180333/1‑93 (MQ=255)

                                      cGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATAtt                                                   <  2:4310727/93‑1 (MQ=255)

                                       gTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATAttt                                                  >  1:6508989/1‑93 (MQ=255)

                                        tAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTa                                                 <  2:1175681/93‑1 (MQ=255)

                                          aTCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACg                                               <  2:2405642/93‑1 (MQ=255)

                                           tCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACgg                                              >  2:5440384/1‑93 (MQ=255)

                                           tCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACgg                                              >  1:4713920/1‑93 (MQ=255)

                                            ccGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGt                                             <  2:4443188/93‑1 (MQ=255)

                                            ccGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGt                                             <  1:2071903/93‑1 (MQ=255)

                                             cGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGtt                                            >  1:6126904/1‑93 (MQ=255)

                                             cGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGtt                                            <  2:1339284/93‑1 (MQ=255)

                                               aaGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTCGCAAAGGACTGCGCGATGGCGCCAATATTTACGGTTaa                                          >  1:5333344/1‑93 (MQ=255)

                                                aGACTGGCGATAAAGTAGAACTGGAAGGAAAATCCGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAg                                         <  1:3998706/93‑1 (MQ=255)

                                                aGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAg                                         >  1:531248/1‑93 (MQ=255)

                                                aGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAg                                         <  2:5123289/93‑1 (MQ=255)

                                                 gACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGt                                        <  2:3286944/93‑1 (MQ=255)

                                                 gACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGt                                        >  2:6115009/1‑93 (MQ=255)

                                                 gACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGt                                        >  2:5075932/1‑93 (MQ=255)

                                                  aCTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtt                                       <  1:2711736/93‑1 (MQ=255)

                                                  aCTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtt                                       <  1:4844722/93‑1 (MQ=255)

                                                  aCTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtt                                       <  1:5552569/93‑1 (MQ=255)

                                                   cTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGttt                                      >  1:3662981/1‑93 (MQ=255)

                                                    tGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtttt                                     >  2:5779519/1‑93 (MQ=255)

                                                        gATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTAc                                 <  1:6697482/93‑1 (MQ=255)

                                                          tAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTc                               <  1:2260226/93‑1 (MQ=255)

                                                           aaaGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCa                              <  2:4372353/93‑1 (MQ=255)

                                                              gTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAAc                           >  2:4470421/1‑93 (MQ=255)

                                                               tAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACt                          >  2:6564928/1‑93 (MQ=255)

                                                                 gAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTg                        <  1:1322909/93‑1 (MQ=255)

                                                                 gAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTg                        >  1:6445577/1‑93 (MQ=255)

                                                                  aaCTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGa                       <  1:283057/93‑1 (MQ=255)

                                                                   aCTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGaa                      <  2:5617618/93‑1 (MQ=255)

                                                                   aCTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGaa                      >  2:6373761/1‑93 (MQ=255)

                                                                    cTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAAc                     <  2:5544014/93‑1 (MQ=255)

                                                                     tGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACg                    >  1:5785140/1‑93 (MQ=255)

                                                                       gaaggaaAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACgag                  <  2:873864/93‑1 (MQ=255)

                                                                        aaggaaAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACgaga                 <  1:1104760/93‑1 (MQ=255)

                                                                        aaggaaAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACgaga                 <  2:344331/93‑1 (MQ=255)

                                                                          ggaaAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACgagaga               >  2:1761834/1‑93 (MQ=255)

                                                                           gaaAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGaa              >  1:3273315/1‑93 (MQ=255)

                                                                           gaaAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGaa              <  1:4336323/93‑1 (MQ=255)

                                                                             aaaTACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGaaaa            <  1:200996/93‑1 (MQ=255)

                                                                             aaaTACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGaaaa            <  1:2582088/93‑1 (MQ=255)

                                                                              aaTACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAg           <  1:4946611/93‑1 (MQ=255)

                                                                              aaTACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAg           >  1:2211664/1‑93 (MQ=255)

                                                                              aaTACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAg           >  2:2255859/1‑93 (MQ=255)

                                                                               aTACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGc          <  2:4936587/93‑1 (MQ=255)

                                                                                 aCGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCAc        <  2:2004831/93‑1 (MQ=255)

                                                                                  cGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCAcc       <  2:2098669/93‑1 (MQ=255)

                                                                                  cGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAAATTGAACGAGAGAAAAGCAcc       <  2:2910533/93‑1 (MQ=255)

                                                                                   gTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCt      >  2:2636345/1‑93 (MQ=255)

                                                                                   gTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCt      <  1:1386994/93‑1 (MQ=255)

                                                                                   cttCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCt      <  2:1538589/92‑1 (MQ=255)

                                                                                     tCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGt    <  1:4456675/93‑1 (MQ=255)

                                                                                       cTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCg  <  1:4209494/93‑1 (MQ=255)

GCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCACTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCG  >  NC_000913/963196‑963375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`