Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,127,778 C→T G239G (GGC→GGT mviN → putative virulence factor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,127,7780CT99.6% 934.3 / NA 255G239G (GGC→GGTmviNputative virulence factor
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base T (112/142);  minor base G (1/0);  total (113/142)
Fisher's exact test for biased strand distribution p-value = 4.43e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 267 total aligned reads displayed.

GAAGATCGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGCGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTACGCCG  >  NC_000913/1127688‑1127866
                                                                                          |                                                                                        
gaagaTCGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGgtgt                                                                                        >  2:5394087/1‑93 (MQ=255)
gaagaTCGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGgtgt                                                                                        <  2:5676746/93‑1 (MQ=255)
 aagaTCGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGtc                                                                                       <  2:4760823/93‑1 (MQ=255)
  agaTCGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGtct                                                                                      >  2:362068/1‑93 (MQ=255)
  agaTCGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGtct                                                                                      >  2:3518151/1‑93 (MQ=255)
   gaTCGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGtctc                                                                                     >  2:2800008/1‑93 (MQ=255)
   gaTCGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGtctc                                                                                     >  1:2641664/1‑93 (MQ=255)
    aTCGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTctct                                                                                    >  1:967707/1‑93 (MQ=255)
      cGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCtgt                                                                                  >  1:6008181/1‑93 (MQ=255)
      cGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCtgt                                                                                  <  1:905360/93‑1 (MQ=255)
        gCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGa                                                                                >  2:6629672/1‑93 (MQ=255)
          aTGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGc                                                                              >  2:364938/1‑93 (MQ=255)
           tGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGcc                                                                             >  2:6586917/1‑93 (MQ=255)
           tGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGcc                                                                             >  2:5177803/1‑93 (MQ=255)
            gCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCa                                                                            >  2:4823145/1‑93 (MQ=255)
              tGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGa                                                                          <  1:2625303/93‑1 (MQ=255)
              tGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGa                                                                          >  1:2916437/1‑93 (MQ=255)
               gttCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGAt                                                                         <  2:6123214/91‑1 (MQ=255)
               ggTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGAt                                                                         <  1:5465256/93‑1 (MQ=255)
                  ccTGCCGCTCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGAtctc                                                                      <  2:2141923/93‑1 (MQ=255)
                   cTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTcc                                                                     >  2:3360292/1‑93 (MQ=255)
                    tGCCGCGCATTAACTTCCACGATGCCGGAGCCATGCGCGTGCTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTCTGAGCCAGATCTCCt                                                                    >  1:2211984/1‑93 (MQ=255)
                    tGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCt                                                                    <  2:6467039/93‑1 (MQ=255)
                     gCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCtt                                                                   <  2:3808329/93‑1 (MQ=255)
                       cgcgCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTaa                                                                 <  2:5359633/93‑1 (MQ=255)
                        gcgcATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAat                                                                >  1:3343582/1‑93 (MQ=255)
                         cgcATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAatc                                                               <  1:6136829/93‑1 (MQ=255)
                          gcATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAatca                                                              >  2:2245817/1‑93 (MQ=255)
                            aTTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAatcatc                                                            >  2:2728148/1‑93 (MQ=255)
                              tAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCaa                                                          <  1:1533632/93‑1 (MQ=255)
                              tAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCaa                                                          >  1:2374453/1‑93 (MQ=255)
                               aaCTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAac                                                         >  2:4327342/1‑93 (MQ=255)
                                 cTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAacac                                                       <  2:1106259/93‑1 (MQ=255)
                                 cTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAacac                                                       >  1:1018462/1‑93 (MQ=255)
                                   tCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCa                                                     >  2:156307/1‑93 (MQ=255)
                                     cACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCAtt                                                   <  1:5146712/93‑1 (MQ=255)
                                     cACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCAtt                                                   >  2:5604981/1‑93 (MQ=255)
                                     cACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCAtt                                                   >  1:6531145/1‑93 (MQ=255)
                                      aCGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCAttt                                                  >  1:5613131/1‑93 (MQ=255)
                                       cGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCAtttt                                                 <  1:2336626/93‑1 (MQ=255)
                                        gATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCAttttt                                                >  1:4630642/1‑93 (MQ=255)
                                        gATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCAttttt                                                <  2:1384232/93‑1 (MQ=255)
                                          tGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGc                                              <  1:5905099/93‑1 (MQ=255)
                                          tGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGc                                              >  1:2242563/1‑93 (MQ=255)
                                           gCCTGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGcc                                             <  1:1929707/93‑1 (MQ=255)
                                             cGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTc                                           <  1:4215364/93‑1 (MQ=255)
                                             cGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTc                                           <  1:3749027/93‑1 (MQ=255)
                                             cGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTc                                           <  2:5852894/93‑1 (MQ=255)
                                               gAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGt                                         <  1:447344/93‑1 (MQ=255)
                                               gAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGt                                         >  2:5257583/1‑93 (MQ=255)
                                               gAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGt                                         >  2:1446427/1‑93 (MQ=255)
                                                ggCAATCCGCGTGGTGAATCAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGtt                                        <  1:6715575/92‑1 (MQ=255)
                                                aGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGtt                                        <  2:3092937/93‑1 (MQ=255)
                                                aGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGtt                                        >  1:1015486/1‑93 (MQ=255)
                                                aGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGtt                                        <  1:1233337/93‑1 (MQ=255)
                                                aGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGtt                                        <  1:3608036/93‑1 (MQ=255)
                                                aGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGtt                                        >  2:1811316/1‑93 (MQ=255)
                                                aGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGtt                                        <  2:1836446/93‑1 (MQ=255)
                                                 gCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGttt                                       >  1:4863509/1‑93 (MQ=255)
                                                 gCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGttt                                       >  1:3276851/1‑93 (MQ=255)
                                                  cAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTc                                      <  2:829706/93‑1 (MQ=255)
                                                  cAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTc                                      <  2:2062155/93‑1 (MQ=255)
                                                    aTGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCtt                                    <  1:4158077/93‑1 (MQ=255)
                                                    aTGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCtt                                    <  1:6403943/93‑1 (MQ=255)
                                                      gcgcGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGc                                  <  2:2348729/93‑1 (MQ=255)
                                                      gcgcGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGc                                  <  2:6157539/93‑1 (MQ=255)
                                                        gcgTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCtt                                <  1:807881/93‑1 (MQ=255)
                                                         cgTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTc                               <  2:4162110/93‑1 (MQ=255)
                                                         cgTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTc                               <  1:2570746/93‑1 (MQ=255)
                                                          gtggtgAAGCAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTcc                              <  2:1918072/93‑1 (MQ=255)
                                                           tggtgAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCg                             >  1:5189809/1‑93 (MQ=255)
                                                            ggtgAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCgg                            >  1:2701998/1‑93 (MQ=255)
                                                            ggtgAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCgg                            >  2:5024026/1‑93 (MQ=255)
                                                               gAAACAGATTGGACCGGCCATCCTTGGTGTCCCTGGGACCCAGATCTCCTTAATCATCAACTCCATTTTTGCCTCGTTTCTTGCTTCCGGTTc                         <  1:2514577/93‑1 (MQ=255)
                                                                 aaCAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCgg                       >  1:3923797/1‑93 (MQ=255)
                                                                  aCAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGgt                      <  2:1146047/93‑1 (MQ=255)
                                                                   cAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGgtg                     <  1:5024457/93‑1 (MQ=255)
                                                                   cAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGgtg                     <  2:2003717/93‑1 (MQ=255)
                                                                    agagGGCACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGgtgt                    <  1:1513676/93‑1 (MQ=255)
                                                                    aGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGgtgt                    <  2:3966800/93‑1 (MQ=255)
                                                                      aTGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACCCCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCt                  <  2:1300104/93‑1 (MQ=255)
                                                                         ggACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTgg               <  2:5951875/93‑1 (MQ=255)
                                                                         ggACCGGCGATCCTTGGGGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTgg               >  2:4505718/1‑93 (MQ=255)
                                                                           aCCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGAt             <  2:6216533/93‑1 (MQ=255)
                                                                               gCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTAt         >  2:4633992/1‑93 (MQ=255)
                                                                               gCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTAt         >  1:569126/1‑93 (MQ=255)
                                                                               gCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTAt         >  1:6314935/1‑93 (MQ=255)
                                                                               gCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTAt         <  1:669033/93‑1 (MQ=255)
                                                                               gCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTAt         >  1:3190434/1‑93 (MQ=255)
                                                                                cGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTAtt        <  1:3115148/93‑1 (MQ=255)
                                                                                 gATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTa       >  1:1836272/1‑93 (MQ=255)
                                                                                  aTCCTTGTTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTAc      <  1:1983281/93‑1 (MQ=255)
                                                                                  aTCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTAc      >  2:3123250/1‑93 (MQ=255)
                                                                                  aTCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTAc      <  2:2969279/93‑1 (MQ=255)
                                                                                  aTCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTAc      >  2:5867342/1‑93 (MQ=255)
                                                                                   tCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATTATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTACg     >  1:5629944/1‑93 (MQ=255)
                                                                                   tCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTACg     >  2:1044396/1‑93 (MQ=255)
                                                                                   tCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTACg     <  1:34749/93‑1 (MQ=255)
                                                                                   tCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTACg     <  2:2623700/93‑1 (MQ=255)
                                                                                     cTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTACGcc   >  1:2030341/1‑93 (MQ=255)
                                                                                          |                                                                                        
GAAGATCGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGCGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTACGCCG  >  NC_000913/1127688‑1127866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: