BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,132,875	T→C	L360P (CTG→CCG)	flgE →	hook protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,132,875	0	T	C	100.0%	672.6 / NA	207	L360P (CTG→CCG)	flgE	hook protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (84/123); total (84/123)

Only 100 of 218 total aligned reads displayed.

ACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAA  >  NC_000913/1132785‑1132964

aCAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGCCAGCCGGGACGGGAAACTTCGGCACCCTGACCAACGGTGCGCCgg                                                                                         >  2:1661495/1‑93 (MQ=255)

aCAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCgg                                                                                         >  1:873034/1‑93 (MQ=255)

  aaCGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGag                                                                                       >  2:3231536/1‑92 (MQ=255)

  aaCGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGaa                                                                                       <  1:4129131/93‑1 (MQ=255)

   aCGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAg                                                                                      >  1:4371263/1‑93 (MQ=255)

    cGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGc                                                                                     <  1:162364/93‑1 (MQ=255)

    cGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGc                                                                                     >  2:1162969/1‑93 (MQ=255)

    cGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGc                                                                                     <  1:825316/93‑1 (MQ=255)

       ctggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTc                                                                                  >  2:1304177/1‑93 (MQ=255)

       ctggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTc                                                                                  >  2:2395031/1‑93 (MQ=255)

        tggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTcc                                                                                 >  2:662701/1‑93 (MQ=255)

        tggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTcc                                                                                 >  2:1922730/1‑93 (MQ=255)

          gtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCaa                                                                               <  2:6210977/93‑1 (MQ=255)

          gtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCaa                                                                               <  2:3721218/93‑1 (MQ=255)

            ctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACg                                                                             <  1:6134557/93‑1 (MQ=255)

             tgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGt                                                                            <  2:1360946/93‑1 (MQ=255)

              gCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTc                                                                           <  1:181521/93‑1 (MQ=255)

                gACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGa                                                                         <  2:4879423/93‑1 (MQ=255)

                gACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGa                                                                         <  1:532020/93‑1 (MQ=255)

                gACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGa                                                                         <  1:3819257/93‑1 (MQ=255)

                 gcGCAATCTTCTGGCGTGGCGCTGTGGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGAt                                                                        <  2:6533231/92‑1 (MQ=255)

                 aCGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGAt                                                                        <  2:3847697/93‑1 (MQ=255)

                 aCGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGAt                                                                        <  2:643592/93‑1 (MQ=255)

                  cGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGAtc                                                                       <  2:4338226/93‑1 (MQ=255)

                   gCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGAtct                                                                      >  2:3089978/1‑93 (MQ=255)

                   gCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGAtct                                                                      >  2:1984459/1‑93 (MQ=255)

                   gCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGAtct                                                                      >  1:5735137/1‑93 (MQ=255)

                   gCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCAGGAAGCGTCCAACGTCGAtct                                                                      >  2:4397090/1‑93 (MQ=255)

                   gCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGCACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGAtct                                                                      <  2:2884026/93‑1 (MQ=255)

                    cAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGAtctc                                                                     >  1:255673/1‑93 (MQ=255)

                     aaTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCa                                                                    <  2:4026989/93‑1 (MQ=255)

                     aaTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCa                                                                    <  2:3375489/93‑1 (MQ=255)

                     aaTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCa                                                                    >  1:3474497/1‑93 (MQ=255)

                      aTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAg                                                                   <  2:1762156/93‑1 (MQ=255)

                       tcttctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGt                                                                  <  1:542850/93‑1 (MQ=255)

                        cttctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTa                                                                 <  1:2223784/93‑1 (MQ=255)

                         ttctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTaa                                                                <  1:3691031/93‑1 (MQ=255)

                          tctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTaaa                                                               <  2:5453800/93‑1 (MQ=255)

                            tggcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGa                                                             <  2:5915329/93‑1 (MQ=255)

                             ggcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGaa                                                            <  1:3135606/93‑1 (MQ=255)

                              gcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAAc                                                           <  2:1862639/93‑1 (MQ=255)

                              gcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAAc                                                           >  2:3308117/1‑93 (MQ=255)

                                 tggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTgg                                                        <  2:471620/93‑1 (MQ=255)

                                  ggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTggc                                                       >  2:1122326/1‑92 (MQ=255)

                                  ggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGt                                                       <  1:748684/93‑1 (MQ=255)

                                   gcgcTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTc                                                      <  1:5533935/93‑1 (MQ=255)

                                    cgcTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCa                                                     <  1:1993750/93‑1 (MQ=255)

                                     gcTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCaa                                                    <  2:1018700/93‑1 (MQ=255)

                                      cTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAat                                                   <  2:5370598/93‑1 (MQ=255)

                                        gTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAatat                                                 <  2:818991/93‑1 (MQ=255)

                                         ttGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATg                                                <  2:4803855/93‑1 (MQ=255)

                                         ttGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATg                                                >  1:6019646/1‑93 (MQ=255)

                                         ttGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCCGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATg                                                <  2:4687688/93‑1 (MQ=255)

                                          tGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGa                                               <  1:641262/93‑1 (MQ=255)

                                          tGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGa                                               <  1:1451946/93‑1 (MQ=255)

                                           ggggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGAt                                              <  2:2496523/93‑1 (MQ=255)

                                            gggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATc                                             <  2:746674/93‑1 (MQ=255)

                                             ggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCg                                            <  2:6712237/93‑1 (MQ=255)

                                              gACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGt                                           <  2:6318465/93‑1 (MQ=255)

                                              gACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGt                                           <  2:3030871/93‑1 (MQ=255)

                                                 aGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGc                                        <  2:5714806/93‑1 (MQ=255)

                                                 aGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGc                                        >  1:5917286/1‑93 (MQ=255)

                                                   ccGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGccc                                      <  1:2473764/93‑1 (MQ=255)

                                                    cgggacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCa                                     <  1:2387408/93‑1 (MQ=255)

                                                    cgggacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCa                                     <  2:5235115/93‑1 (MQ=255)

                                                     gggacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCGCAg                                    >  1:2938364/1‑93 (MQ=255)

                                                     gggacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAg                                    >  2:441407/1‑93 (MQ=255)

                                                     gggacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAg                                    >  1:297386/1‑93 (MQ=255)

                                                       gacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCg                                  >  1:6615162/1‑93 (MQ=255)

                                                        acgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATGGTTGCCCAGCGt                                 >  1:1980499/1‑93 (MQ=255)

                                                          gggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTaa                               >  2:3517260/1‑93 (MQ=255)

                                                             aaaCTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTa                            <  2:5411625/93‑1 (MQ=255)

                                                             aaaCTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTa                            <  1:5197163/93‑1 (MQ=255)

                                                             aaaCTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTa                            >  1:1746072/1‑93 (MQ=255)

                                                               aCTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATc                          >  1:4669560/1‑93 (MQ=255)

                                                                cTTTGGCACCCTGACCAACGGTGCTCCGTAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCa                         <  2:3943864/93‑1 (MQ=255)

                                                                cTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCa                         >  1:4564191/1‑93 (MQ=255)

                                                                cTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCa                         <  2:1789431/93‑1 (MQ=255)

                                                                 tttGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAg                        >  1:3969783/1‑93 (MQ=255)

                                                                  ttGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGt                       >  2:526289/1‑93 (MQ=255)

                                                                  ttGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGt                       <  2:5155739/93‑1 (MQ=255)

                                                                   tGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTc                      <  2:4357909/93‑1 (MQ=255)

                                                                   tGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTc                      <  1:4473054/93‑1 (MQ=255)

                                                                    ggCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCt                     >  1:3035869/1‑93 (MQ=255)

                                                                    ggCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCt                     <  1:1537905/93‑1 (MQ=255)

                                                                      cACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTaa                   <  2:3871954/93‑1 (MQ=255)

                                                                       aCCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAAc                  <  2:2781968/93‑1 (MQ=255)

                                                                       aCCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAAc                  <  1:3870206/93‑1 (MQ=255)

                                                                        cccTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAAcc                 >  1:5023763/1‑92 (MQ=255)

                                                                         ccTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGc                >  2:4237869/1‑93 (MQ=255)

                                                                         ccTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGc                >  2:6611197/1‑93 (MQ=255)

                                                                         ccTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGc                >  1:1061651/1‑93 (MQ=255)

                                                                            gACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCa             >  1:3757566/1‑93 (MQ=255)

                                                                             aCCAACGGCGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAg            >  2:5072927/1‑93 (MQ=255)

                                                                              ccAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGa           >  2:1519039/1‑93 (MQ=255)

                                                                                 aCGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCa        <  2:2476544/93‑1 (MQ=255)

                                                                                  cGGTGTGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCAt       >  1:4224324/1‑93 (MQ=255)

                                                                                  cGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCAt       <  2:2849126/93‑1 (MQ=255)

                                                                                  cGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCAt       >  1:6264296/1‑93 (MQ=255)

                                                                                  cGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCAt       <  1:6578739/93‑1 (MQ=255)

ACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAA  >  NC_000913/1132785‑1132964

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`