BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,273,390	T→C	R81R (CGT→CGC)	ychP →	putative factor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,273,390	0	T	C	100.0%	756.0 / NA	232	R81R (CGT→CGC)	ychP	putative factor
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (98/134); total (98/134)

Only 100 of 237 total aligned reads displayed.

AATCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGTGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGTGA  >  NC_000913/1273301‑1273478

 aTCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGaa                                                                                      >  1:5068792/1‑93 (MQ=255)

 aTCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGaa                                                                                      <  2:6518198/93‑1 (MQ=255)

  tCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAg                                                                                     >  2:6457371/1‑93 (MQ=255)

  tCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAg                                                                                     >  1:3549321/1‑93 (MQ=255)

  tCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAg                                                                                     <  1:2077982/93‑1 (MQ=255)

   cAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGc                                                                                    <  1:465255/93‑1 (MQ=255)

    aGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCt                                                                                   >  2:630955/1‑93 (MQ=255)

    aGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCt                                                                                   >  2:4402648/1‑93 (MQ=255)

     gCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTg                                                                                  >  2:820704/1‑93 (MQ=255)

      cACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTgg                                                                                 <  2:5527364/93‑1 (MQ=255)

      cACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTgg                                                                                 <  2:3408715/93‑1 (MQ=255)

       aCGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGt                                                                                >  2:1409426/1‑93 (MQ=255)

       aCGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGt                                                                                >  1:4306749/1‑93 (MQ=255)

        cGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGtt                                                                               <  1:3608299/93‑1 (MQ=255)

        cGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGtt                                                                               <  2:6626335/93‑1 (MQ=255)

        cGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGtt                                                                               <  1:4506289/93‑1 (MQ=255)

         gTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGttt                                                                              >  1:2802865/1‑93 (MQ=255)

            gagTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTtgtg                                                                           >  1:2878846/1‑93 (MQ=255)

                ccTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGt                                                                       >  2:6272315/1‑93 (MQ=255)

                 cTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGtt                                                                      <  1:3770518/93‑1 (MQ=255)

                 cTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGtt                                                                      <  2:5685426/93‑1 (MQ=255)

                 cTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGtt                                                                      <  1:4005901/93‑1 (MQ=255)

                  tGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTa                                                                     >  2:2543762/1‑93 (MQ=255)

                   ggCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTAc                                                                    >  1:3128681/1‑93 (MQ=255)

                     cTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACaa                                                                  <  1:1671371/93‑1 (MQ=255)

                      tATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAg                                                                 >  2:4892596/1‑93 (MQ=255)

                       aTCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGa                                                                >  1:3284550/1‑93 (MQ=255)

                       aTCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGa                                                                >  2:1612133/1‑93 (MQ=255)

                        tCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGAt                                                               <  1:2668290/93‑1 (MQ=255)

                        tCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGAt                                                               >  1:5358301/1‑93 (MQ=255)

                          aCCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATaa                                                             >  2:3859865/1‑93 (MQ=255)

                          aCCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATaa                                                             <  1:2153347/93‑1 (MQ=255)

                          aCCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATaa                                                             >  1:1049711/1‑93 (MQ=255)

                           ccGTGGGAAAATGCCAGTGTTGCCGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAAt                                                            <  1:3035321/93‑1 (MQ=255)

                            cGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATg                                                           >  2:6683122/1‑93 (MQ=255)

                              tGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGAt                                                         <  1:5549642/93‑1 (MQ=255)

                               ggggAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATc                                                        <  1:4386179/93‑1 (MQ=255)

                               ggggAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATc                                                        >  2:5096753/1‑93 (MQ=255)

                               ggggAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATc                                                        <  2:4490237/93‑1 (MQ=255)

                                 ggAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGt                                                      <  2:2306979/93‑1 (MQ=255)

                                 ggAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGt                                                      <  2:867148/93‑1 (MQ=255)

                                   aaaTGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTa                                                    <  1:2744202/93‑1 (MQ=255)

                                    aaTGCCAGTGTTGACGTCGAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTAt                                                   <  2:1349838/93‑1 (MQ=255)

                                    aaTGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTAt                                                   <  2:2831942/93‑1 (MQ=255)

                                     aTGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTAtc                                                  <  1:3624164/93‑1 (MQ=255)

                                     aTGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTAtc                                                  <  1:3402716/93‑1 (MQ=255)

                                     aTGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTAtc                                                  <  1:1823691/93‑1 (MQ=255)

                                     aTGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTAtc                                                  <  1:1779725/93‑1 (MQ=255)

                                      tGCTAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTAtct                                                 <  2:28964/93‑1 (MQ=255)

                                      tGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTAtct                                                 <  1:714966/93‑1 (MQ=255)

                                      tGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTAtct                                                 <  1:1407136/93‑1 (MQ=255)

                                       gCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTAtctc                                                <  2:5859387/93‑1 (MQ=255)

                                        ccAGTGTTAACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCa                                               >  1:6559220/1‑93 (MQ=255)

                                          aGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCAcc                                             <  2:885046/93‑1 (MQ=255)

                                          aGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCAcc                                             <  1:4952623/93‑1 (MQ=255)

                                          aGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCAcc                                             >  1:665491/1‑93 (MQ=255)

                                           gtgtTGACGTCAGAGTGTATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCTCCt                                            <  1:5694097/93‑1 (MQ=255)

                                           gtgtTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGATATCTCACCt                                            >  1:2580743/1‑93 (MQ=255)

                                            tgtTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGGTATCTCACCTg                                           >  1:1442780/1‑93 (MQ=255)

                                             gtTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTgg                                          >  1:885336/1‑93 (MQ=255)

                                              ttGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGa                                         <  1:5202444/93‑1 (MQ=255)

                                              ttGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGa                                         >  1:2288368/1‑93 (MQ=255)

                                               tGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAg                                        >  2:2568441/1‑93 (MQ=255)

                                                gACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGc                                       <  2:6103934/93‑1 (MQ=255)

                                                 aCGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGcc                                      >  2:4576170/1‑93 (MQ=255)

                                                 aCGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGcc                                      <  1:2909831/93‑1 (MQ=255)

                                                  cGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCa                                     <  1:6196465/93‑1 (MQ=255)

                                                   gTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAg                                    <  2:2674872/93‑1 (MQ=255)

                                                     cAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCt                                  <  1:544716/93‑1 (MQ=255)

                                                      aaaGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCtt                                 <  2:1153570/93‑1 (MQ=255)

                                                      aaaGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCtt                                 <  2:5251191/93‑1 (MQ=255)

                                                        aGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTgg                               <  1:2338854/93‑1 (MQ=255)

                                                         gTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGt                              <  2:2421973/93‑1 (MQ=255)

                                                         gTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGt                              <  1:370601/93‑1 (MQ=255)

                                                          tGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTc                             <  2:416517/93‑1 (MQ=255)

                                                            gATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCtt                           >  2:1556578/1‑93 (MQ=255)

                                                              tAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTAc                         <  1:447930/93‑1 (MQ=255)

                                                              tAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTAc                         <  1:1185780/93‑1 (MQ=255)

                                                              tAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTAc                         >  1:975871/1‑93 (MQ=255)

                                                                aCGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTc                       <  2:5449974/93‑1 (MQ=255)

                                                                aCGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTc                       >  2:1053151/1‑93 (MQ=255)

                                                                aCGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTc                       <  2:4149199/93‑1 (MQ=255)

                                                                 cGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTca                      >  1:5801635/1‑93 (MQ=255)

                                                                 cGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTca                      <  1:408636/93‑1 (MQ=255)

                                                                   aaGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTcagc                    >  1:3862814/1‑93 (MQ=255)

                                                                    aGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTcagca                   >  2:6020186/1‑93 (MQ=255)

                                                                     ggACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTcagcag                  <  1:1534656/93‑1 (MQ=255)

                                                                     ggACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTcagcag                  >  1:5222320/1‑93 (MQ=255)

                                                                      gACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAgg                 >  1:948121/1‑93 (MQ=255)

                                                                       aCATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGa                <  1:1128819/93‑1 (MQ=255)

                                                                       aCATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGa                <  2:5866148/93‑1 (MQ=255)

                                                                       aCATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGa                <  2:3309318/93‑1 (MQ=255)

                                                                        cATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGAt               >  1:5904811/1‑93 (MQ=255)

                                                                          tttCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATaa             <  2:2993825/93‑1 (MQ=255)

                                                                          tttCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATaa             <  1:748767/93‑1 (MQ=255)

                                                                            tCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATg           >  2:6357539/1‑93 (MQ=255)

                                                                              aCCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATggg         >  2:2058545/1‑93 (MQ=255)

                                                                              aCCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATggg         >  1:2268946/1‑93 (MQ=255)

                                                                              aCCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATggg         >  2:5885335/1‑93 (MQ=255)

                                                                                   cAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGt    <  2:1875546/93‑1 (MQ=255)

AATCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGTGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGTGA  >  NC_000913/1273301‑1273478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`