BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,293,354	A→G	H202R (CAT→CGT)	tdk →	thymidine kinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,293,354	0	A	G	100.0%	691.6 / NA	212	H202R (CAT→CGT)	tdk	thymidine kinase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (118/94); total (118/94)

Only 100 of 215 total aligned reads displayed.

TTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCATCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTA  >  NC_000913/1293264‑1293443

ttGGTGGTAATGAACGATACGTTTCTGTATGCAGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTc                                                                                         <  2:1198706/93‑1 (MQ=255)

 tggtggTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCg                                                                                        >  2:1157528/1‑93 (MQ=255)

   gtggtAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGcc                                                                                      <  2:5859319/93‑1 (MQ=255)

      gtAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACg                                                                                   >  1:5878410/1‑93 (MQ=255)

       tAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGa                                                                                  >  1:6029270/1‑93 (MQ=255)

       tAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGa                                                                                  <  1:4086624/93‑1 (MQ=255)

       tAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGa                                                                                  <  1:2884540/93‑1 (MQ=255)

        aaTGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGAt                                                                                 <  1:920426/93‑1 (MQ=255)

        aaTGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGAt                                                                                 <  2:3597840/93‑1 (MQ=255)

        aaTGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGAt                                                                                 <  1:2921582/93‑1 (MQ=255)

         aTGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGAtt                                                                                <  2:6528712/93‑1 (MQ=255)

         aTGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGAtt                                                                                >  2:5023093/1‑93 (MQ=255)

         aTGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGAtt                                                                                >  2:6264215/1‑93 (MQ=255)

            aaCGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATtaat                                                                             <  2:5812332/93‑1 (MQ=255)

             aCGATACGTTTCTGTATGCCTTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATtaata                                                                            <  1:1450538/93‑1 (MQ=255)

              cGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATtaataa                                                                           <  1:3671391/93‑1 (MQ=255)

               gATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAg                                                                          <  2:1407306/93‑1 (MQ=255)

               gATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAg                                                                          <  1:479774/93‑1 (MQ=255)

               gATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAg                                                                          >  1:1805742/1‑93 (MQ=255)

                aTACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGa                                                                         >  1:3573467/1‑93 (MQ=255)

                 tACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGaa                                                                        <  1:5149597/93‑1 (MQ=255)

                 tACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGaa                                                                        >  2:5133607/1‑93 (MQ=255)

                 tACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGaa                                                                        >  1:804773/1‑93 (MQ=255)

                 tACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGaa                                                                        <  2:2109931/93‑1 (MQ=255)

                  aCGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAAt                                                                       >  1:2620953/1‑93 (MQ=255)

                   cGTTTCTGTATGCCGCAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAAtt                                                                      <  2:526965/93‑1 (MQ=255)

                         tGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTa                                                                >  1:325669/1‑93 (MQ=255)

                         tGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTa                                                                >  1:4720160/1‑93 (MQ=255)

                          gTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTAc                                                               <  2:6628698/93‑1 (MQ=255)

                          gTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTAc                                                               <  2:540761/93‑1 (MQ=255)

                            aTGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTg                                                             >  2:1517183/1‑93 (MQ=255)

                            aTGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTg                                                             >  2:5171792/1‑93 (MQ=255)

                             tGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGa                                                            <  2:413101/93‑1 (MQ=255)

                              tccGTAAACACGATAAAGAGGCGTTAGAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGAc                                                           <  2:2469051/92‑1 (MQ=255)

                              gCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGAc                                                           <  1:2027007/93‑1 (MQ=255)

                               ccGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACa                                                          >  2:6437697/1‑93 (MQ=255)

                                cGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAg                                                         <  2:556175/93‑1 (MQ=255)

                                 gTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAgg                                                        >  2:6222730/1‑93 (MQ=255)

                                 gTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAgg                                                        >  1:3009850/1‑93 (MQ=255)

                                  tAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAggg                                                       <  1:2174855/93‑1 (MQ=255)

                                    aaCACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTg                                                     >  1:4883377/1‑93 (MQ=255)

                                    aaCACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTg                                                     <  2:266948/93‑1 (MQ=255)

                                     acacTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGa                                                    >  2:4182563/1‑93 (MQ=255)

                                      cacTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGCACGGCGTCGCCACGAATAATAAGAATTTCTTTACTGACAGGGTGAg                                                   >  2:600678/1‑93 (MQ=255)

                                      cacTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAg                                                   >  1:6392243/1‑93 (MQ=255)

                                       acTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGc                                                  <  2:3023832/93‑1 (MQ=255)

                                          ataAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAgg                                               <  1:4516292/93‑1 (MQ=255)

                                          ataAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAgg                                               <  1:2599890/93‑1 (MQ=255)

                                           taAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAggg                                              >  1:5996700/1‑93 (MQ=255)

                                           taAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAggg                                              >  1:2389001/1‑93 (MQ=255)

                                           taAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAggg                                              >  2:3400117/1‑93 (MQ=255)

                                               gagGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACt                                          <  2:4665105/93‑1 (MQ=255)

                                                agGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACtt                                         >  2:4589068/1‑93 (MQ=255)

                                                 ggCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACttt                                        <  1:6191693/93‑1 (MQ=255)

                                                 ggCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACttt                                        >  1:2770482/1‑93 (MQ=255)

                                                  gCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACtttt                                       <  2:550551/93‑1 (MQ=255)

                                                    gTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTAt                                     >  2:6073664/1‑93 (MQ=255)

                                                    gTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTAt                                     <  2:4040911/93‑1 (MQ=255)

                                                     ttACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATc                                    >  2:5585494/1‑93 (MQ=255)

                                                     ttACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATc                                    >  1:3408363/1‑93 (MQ=255)

                                                     ttACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATc                                    >  1:1732837/1‑93 (MQ=255)

                                                      tACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATcc                                   <  2:85896/93‑1 (MQ=255)

                                                         aaGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGt                                >  1:2733090/1‑93 (MQ=255)

                                                          aGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTc                               >  1:4984542/1‑93 (MQ=255)

                                                          aGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTc                               <  2:5543691/93‑1 (MQ=255)

                                                          aGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTc                               >  2:651428/1‑93 (MQ=255)

                                                          aGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTc                               <  1:6140886/93‑1 (MQ=255)

                                                           gTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCa                              <  2:2945297/93‑1 (MQ=255)

                                                              gACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGtt                           >  1:213428/1‑93 (MQ=255)

                                                              gACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGtt                           <  1:2955591/93‑1 (MQ=255)

                                                              gACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGtt                           >  1:5690935/1‑93 (MQ=255)

                                                               aCTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTc                          >  2:4798398/1‑93 (MQ=255)

                                                               aCTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTc                          >  1:148193/1‑93 (MQ=255)

                                                                cTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCg                         >  1:3598710/1‑93 (MQ=255)

                                                                cTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCg                         >  1:1239992/1‑93 (MQ=255)

                                                                cTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCg                         >  2:3336012/1‑93 (MQ=255)

                                                                 tCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGt                        <  1:3900470/93‑1 (MQ=255)

                                                                 tCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGt                        >  2:5112498/1‑93 (MQ=255)

                                                                 tCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGt                        >  1:5479630/1‑93 (MQ=255)

                                                                  cATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGtt                       <  1:1574628/93‑1 (MQ=255)

                                                                  cATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGtt                       <  1:5045813/93‑1 (MQ=255)

                                                                   aTTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGttt                      <  2:4901158/93‑1 (MQ=255)

                                                                   aTTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGttt                      >  1:970410/1‑93 (MQ=255)

                                                                      aaCGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTAc                   <  2:5600135/93‑1 (MQ=255)

                                                                         ggCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCa                <  2:3010533/93‑1 (MQ=255)

                                                                          gCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCAc               >  2:4385652/1‑93 (MQ=255)

                                                                          gCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCAc               <  1:4126405/93‑1 (MQ=255)

                                                                            tATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCActt             >  2:2573291/1‑93 (MQ=255)

                                                                             aTTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCActtc            <  2:2405342/93‑1 (MQ=255)

                                                                                cAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACttcttc         <  1:751346/93‑1 (MQ=255)

                                                                                cAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACttcttc         <  1:518671/93‑1 (MQ=255)

                                                                                 aGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTcc        >  2:1751589/1‑93 (MQ=255)

                                                                                  ggAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCg       >  2:6373646/1‑93 (MQ=255)

                                                                                  ggAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCg       >  1:544687/1‑93 (MQ=255)

                                                                                  ggAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCg       <  2:5394508/93‑1 (MQ=255)

                                                                                  ggAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCg       >  2:2093855/1‑93 (MQ=255)

                                                                                  ggAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCg       <  2:3195607/93‑1 (MQ=255)

                                                                                       ggCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCta  <  2:5935024/93‑1 (MQ=255)

                                                                                       ggCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCta  >  1:5510501/1‑93 (MQ=255)

                                                                                       ggCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCta  >  1:1431831/1‑93 (MQ=255)

TTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCATCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTA  >  NC_000913/1293264‑1293443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`