BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,480,081	T→C	S383S (AGT→AGC)	ynbD →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,480,081	0	T	C	99.5%	674.6 / ‑4.7	210	S383S (AGT→AGC)	ynbD	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (108/101); total (108/102)
Fisher's exact test for biased strand distribution p-value = 4.86e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.54e-01

Only 100 of 221 total aligned reads displayed.

GGAGCTCCGACAGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGTGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTCGAGCCAGACGCCCGCA  >  NC_000913/1479991‑1480170

  aGCTCCGACAGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAgcgcgc                                                                                       <  2:4754628/93‑1 (MQ=255)

   gCTCCGACAGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCt                                                                                      >  2:18332/1‑93 (MQ=255)

   gCTCCGACAGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCt                                                                                      >  2:4440845/1‑93 (MQ=255)

     tCCGACAGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCtgg                                                                                    >  1:1433974/1‑93 (MQ=255)

     tCCGACAGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCtgg                                                                                    <  1:5295506/93‑1 (MQ=255)

      ccGACAGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCtggt                                                                                   <  2:959688/93‑1 (MQ=255)

      ccGACAGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCtggt                                                                                   <  2:2177995/93‑1 (MQ=255)

       cGACAGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCtggtg                                                                                  >  1:2750340/1‑93 (MQ=255)

        gACAGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCtggtgg                                                                                 >  1:1876339/1‑93 (MQ=255)

        gACAGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCtggtgg                                                                                 >  2:19368/1‑93 (MQ=255)

        gACAGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCtggtgg                                                                                 >  1:2958906/1‑93 (MQ=255)

        gACAGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCtggtgg                                                                                 <  1:279162/93‑1 (MQ=255)

         aCAGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCtggtggt                                                                                <  2:3420576/93‑1 (MQ=255)

           aGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCtggtggtgg                                                                              >  2:465048/1‑93 (MQ=255)

           aGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCtggtggtgg                                                                              <  1:738848/93‑1 (MQ=255)

              ccGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTggcgg                                                                           >  1:593833/1‑93 (MQ=255)

                    cGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGgt                                                                     <  2:6624892/93‑1 (MQ=255)

                     gATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGATGGTGGTGGCGGCATGgtt                                                                    >  1:2542851/1‑93 (MQ=255)

                     gATGCGGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGgtt                                                                    <  1:5828853/93‑1 (MQ=255)

                      aTGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGgttg                                                                   >  2:3083513/1‑93 (MQ=255)

                       tGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGgttgt                                                                  <  2:5839526/93‑1 (MQ=255)

                       tGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGgttgt                                                                  >  1:99059/1‑93 (MQ=255)

                        gCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGgttgtt                                                                 <  1:892749/93‑1 (MQ=255)

                          tGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTtgttat                                                               <  2:4852664/93‑1 (MQ=255)

                          tGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTtgttat                                                               >  1:3508322/1‑93 (MQ=255)

                           ggAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTtgttatg                                                              <  2:1088122/93‑1 (MQ=255)

                             aaaCATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGgttgt                                                                  <  2:3621666/87‑1 (MQ=255)

                             aaaCATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTtgttatgtt                                                            >  1:6290228/1‑93 (MQ=255)

                              aaCATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTtgttatgtta                                                           >  1:640312/1‑93 (MQ=255)

                               aCATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTAc                                                          <  1:3649547/93‑1 (MQ=255)

                                cATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACg                                                         <  2:147496/93‑1 (MQ=255)

                                  ttACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGa                                                       >  2:4908174/1‑93 (MQ=255)

                                    aCGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGaca                                                     <  1:2721051/93‑1 (MQ=255)

                                     cgcgAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGacac                                                    <  1:3707614/93‑1 (MQ=255)

                                     cgcgAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGacac                                                    <  1:4331049/93‑1 (MQ=255)

                                     cgcgAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGacac                                                    <  1:4736740/93‑1 (MQ=255)

                                      gcgAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACt                                                   >  2:1344722/1‑93 (MQ=255)

                                        gAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGt                                                 >  1:379684/1‑93 (MQ=255)

                                          agagCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTaa                                               >  1:1330583/1‑93 (MQ=255)

                                          agagCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTaa                                               >  1:5617931/1‑93 (MQ=255)

                                           gagCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTaaa                                              >  2:6726487/1‑93 (MQ=255)

                                           gagCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTaaa                                              >  2:1539124/1‑93 (MQ=255)

                                            agCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTaaaa                                             <  2:5069821/93‑1 (MQ=255)

                                             gCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAAc                                            >  2:564/1‑93 (MQ=255)

                                             gCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAAc                                            <  2:764573/93‑1 (MQ=255)

                                               aaGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTTCGGACACTGTAAAACCg                                          >  1:6181420/1‑93 (MQ=255)

                                               aaGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCg                                          >  1:3227214/1‑93 (MQ=255)

                                               aaGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCg                                          >  2:2050190/1‑93 (MQ=255)

                                               aaGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCg                                          >  1:5728116/1‑93 (MQ=255)

                                                aGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGt                                         >  2:525678/1‑93 (MQ=255)

                                                aGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGt                                         >  1:6646838/1‑93 (MQ=255)

                                                aGGCAGCGTCCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGAAAAACCGt                                         <  1:23704/93‑1 (MQ=255)

                                                 ggCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGtt                                        >  2:2350676/1‑93 (MQ=255)

                                                 ggCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGtt                                        <  2:6059053/93‑1 (MQ=255)

                                                   cAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTaa                                      <  1:2510101/93‑1 (MQ=255)

                                                   cAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTaa                                      >  2:4337412/1‑93 (MQ=255)

                                                   cAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTaa                                      <  1:2014525/93‑1 (MQ=255)

                                                    aGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAAt                                     >  1:395089/1‑93 (MQ=255)

                                                     gCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATg                                    <  2:3598236/93‑1 (MQ=255)

                                                        ttCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAg                                 >  2:4936929/1‑93 (MQ=255)

                                                        ttCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAg                                 >  2:121146/1‑93 (MQ=255)

                                                        ttCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAg                                 >  2:5942308/1‑93 (MQ=255)

                                                         tCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAgg                                >  1:4820758/1‑92 (MQ=255)

                                                         tCTGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGc                                >  1:3083230/1‑93 (MQ=255)

                                                           tGGTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGa                              >  2:1561770/1‑93 (MQ=255)

                                                            ggTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGAt                             <  1:2867212/93‑1 (MQ=255)

                                                             gTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGAtt                            >  2:2145566/1‑93 (MQ=255)

                                                             gTCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGGGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGAtt                            >  2:3710496/1‑93 (MQ=255)

                                                              tCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTa                           <  1:2122130/93‑1 (MQ=255)

                                                              tCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTa                           <  2:4094085/93‑1 (MQ=255)

                                                              tCCATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTa                           >  1:6088889/1‑93 (MQ=255)

                                                               ccATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAg                          >  1:6680998/1‑93 (MQ=255)

                                                                cATTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGc                         <  1:4926105/93‑1 (MQ=255)

                                                                 aTTGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCt                        <  2:1819679/93‑1 (MQ=255)

                                                                  ttGTGCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCta                       >  2:3178682/1‑93 (MQ=255)

                                                                   tgtgCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGAAACTGTAAAACCGTTAATGAAGCGATTAGCtat                      >  2:2841543/1‑93 (MQ=255)

                                                                    gtgCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCtata                     <  2:3229352/93‑1 (MQ=255)

                                                                    gtgCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCtata                     <  2:5144061/93‑1 (MQ=255)

                                                                      gCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATAtt                   <  2:5490414/93‑1 (MQ=255)

                                                                      gCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATAtt                   <  2:1153740/93‑1 (MQ=255)

                                                                      gCATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATAtt                   >  2:258982/1‑93 (MQ=255)

                                                                       cATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTc                  <  1:4889876/93‑1 (MQ=255)

                                                                       cATTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTc                  <  1:1031448/93‑1 (MQ=255)

                                                                        aTTGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTCg                 <  1:3143027/93‑1 (MQ=255)

                                                                         ttGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTCGa                >  2:3758730/1‑93 (MQ=255)

                                                                         ttGGGATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTCGa                >  1:3999328/1‑93 (MQ=255)

                                                                            ggATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTCGAGcc             <  1:1787885/93‑1 (MQ=255)

                                                                             gATTATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTCGAGCCa            >  1:5404274/1‑93 (MQ=255)

                                                                               ttATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTCGAGCCAGa          <  2:3679451/93‑1 (MQ=255)

                                                                               ttATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTCGAGCCAGa          >  1:6201390/1‑93 (MQ=255)

                                                                                tATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACAGTGTAAAACCGTTAATGAAGCGATTAGCTATATTCGAGCCAGAc         >  2:3811581/1‑93 (MQ=255)

                                                                                tATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTCGAGCCAGAc         <  2:6217995/93‑1 (MQ=255)

                                                                                tATCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTCGAGCCAGAc         <  2:1957513/93‑1 (MQ=255)

                                                                                 aTCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTCGAGCCAGACg        <  2:5684117/93‑1 (MQ=255)

                                                                                 aTCGCGCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTCGAGCCAGACg        <  2:2918005/93‑1 (MQ=255)

                                                                                   cgcgCAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTCGAGCCAGACGcc      <  2:2653543/93‑1 (MQ=255)

                                                                                    gcgcAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTCGAGCCAGACGccc     >  2:5394755/1‑93 (MQ=255)

                                                                                    gcgcAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTCGAGCCAGACGccc     <  2:896721/93‑1 (MQ=255)

                                                                                       cAGTGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTCGAGCCAGACGCCCGCa  <  2:2769860/93‑1 (MQ=255)

                                                                                       cAGCGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTCGAGCCAGACGCCCGCa  <  1:6449219/93‑1 (MQ=255)

GGAGCTCCGACAGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGTGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTCGAGCCAGACGCCCGCA  >  NC_000913/1479991‑1480170

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`