Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,664,091 T→C S271S (AGT→AGC b1592 → putative chloride channel

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,664,0910TC99.5% 700.1 / ‑4.7 213S271S (AGT→AGCb1592putative chloride channel
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (115/97);  total (116/97)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.99e-01

Only 100 of 216 total aligned reads displayed.

TGCGCTGATTATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGTCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGTGTGGGGCAACG  >  NC_000913/1664001‑1664179
                                                                                          |                                                                                        
tGCGCTGATTATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGcct                                                                                        >  1:1263452/1‑93 (MQ=255)
  cgcTGATTATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCa                                                                                      <  2:3747691/93‑1 (MQ=255)
   gcTGATTATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCaa                                                                                     >  1:3377497/1‑93 (MQ=255)
    cTGATTATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCaaa                                                                                    >  2:5162066/1‑93 (MQ=255)
     tGATTATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAAc                                                                                   >  2:3534416/1‑93 (MQ=255)
     tGATTATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAAc                                                                                   >  1:5826857/1‑93 (MQ=255)
      gATTATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACt                                                                                  <  2:4126666/93‑1 (MQ=255)
      gATTATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACt                                                                                  >  1:6095182/1‑93 (MQ=255)
        ttATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTg                                                                                >  2:4530002/1‑93 (MQ=255)
        ttATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTg                                                                                <  2:2728943/93‑1 (MQ=255)
        ttATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTg                                                                                >  2:6438369/1‑93 (MQ=255)
        ttATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTg                                                                                <  1:157166/93‑1 (MQ=255)
         tATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTgc                                                                               <  1:6073427/93‑1 (MQ=255)
         tATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTgc                                                                               <  1:1738081/93‑1 (MQ=255)
         tATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTgc                                                                               >  1:772810/1‑93 (MQ=255)
            cAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGcgcc                                                                            <  1:3908941/93‑1 (MQ=255)
                aCAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGccc                                                                        <  1:3049180/93‑1 (MQ=255)
                aCAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGccc                                                                        <  1:3074535/93‑1 (MQ=255)
                aCAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGccc                                                                        >  2:2055614/1‑93 (MQ=255)
                 cAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGGTAATGAACGCCTGTCATCGTGGATTTGTGAGCATCAAACTTGCGCCGCCCt                                                                       >  1:4022153/1‑93 (MQ=255)
                    gtgtGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGc                                                                    >  1:3242576/1‑93 (MQ=255)
                     tgtgCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCa                                                                   <  2:242018/93‑1 (MQ=255)
                     tgtgCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCa                                                                   <  2:2456471/93‑1 (MQ=255)
                      gtgCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCaa                                                                  <  1:408794/93‑1 (MQ=255)
                       tgCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAAc                                                                 <  1:6352519/93‑1 (MQ=255)
                          tGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTgg                                                              >  2:2361507/1‑93 (MQ=255)
                          tGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTgg                                                              >  2:579912/1‑93 (MQ=255)
                           ggCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGc                                                             >  1:4307567/1‑93 (MQ=255)
                           ggCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGc                                                             >  2:5234593/1‑93 (MQ=255)
                             cAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCAc                                                           <  2:3150293/93‑1 (MQ=255)
                              aGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACt                                                          <  1:2393194/93‑1 (MQ=255)
                              aGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACt                                                          >  2:6700167/1‑93 (MQ=255)
                               ggTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTa                                                         >  2:5583935/1‑93 (MQ=255)
                               ggTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTa                                                         <  1:2996193/93‑1 (MQ=255)
                                gTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAg                                                        <  1:2216376/93‑1 (MQ=255)
                                 tCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAgg                                                       >  1:5097845/1‑93 (MQ=255)
                                  cTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGc                                                      <  1:1446094/93‑1 (MQ=255)
                                    gtgCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCgg                                                    <  1:3063674/93‑1 (MQ=255)
                                    gtgCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCgg                                                    <  1:2449914/93‑1 (MQ=255)
                                    gtgCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCgg                                                    >  2:6611004/1‑93 (MQ=255)
                                      gCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGt                                                  <  2:4678932/93‑1 (MQ=255)
                                         gacgacTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGa                                               <  1:2870714/93‑1 (MQ=255)
                                         gACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGa                                               >  1:1421409/1‑93 (MQ=255)
                                         gACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGa                                               <  2:1263452/93‑1 (MQ=255)
                                             aCTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGt                                           >  2:3643695/1‑93 (MQ=255)
                                             aCTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGt                                           >  1:810824/1‑93 (MQ=255)
                                              cTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTg                                          >  2:1823211/1‑93 (MQ=255)
                                               tgttgtTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTgg                                         <  1:4798902/93‑1 (MQ=255)
                                               tgttgtTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTgg                                         <  2:4349460/93‑1 (MQ=255)
                                                gttgttAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTggg                                        >  2:390161/1‑93 (MQ=255)
                                                 ttgttAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGt                                       >  2:667141/1‑93 (MQ=255)
                                                  tgttAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTc                                      <  1:5940076/93‑1 (MQ=255)
                                                     tAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGc                                   >  1:619193/1‑93 (MQ=255)
                                                      aaCGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCt                                  >  1:2053192/1‑93 (MQ=255)
                                                       aCGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCtt                                 >  2:5055591/1‑93 (MQ=255)
                                                       aCGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCtt                                 <  1:999572/93‑1 (MQ=255)
                                                         gTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTc                               >  2:4461119/1‑93 (MQ=255)
                                                          ttAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTcc                              >  1:3510367/1‑93 (MQ=255)
                                                          ttAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTcc                              >  2:4705482/1‑93 (MQ=255)
                                                           tAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTccc                             <  1:4814598/93‑1 (MQ=255)
                                                           tAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTccc                             <  1:5176610/93‑1 (MQ=255)
                                                           tAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTccc                             <  1:3712692/93‑1 (MQ=255)
                                                            aaTGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCt                            <  2:1956985/93‑1 (MQ=255)
                                                              tGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGt                          >  1:422283/1‑93 (MQ=255)
                                                              tGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGt                          >  2:592897/1‑93 (MQ=255)
                                                              tGAACGCCTGTCATCGTGAATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGt                          <  2:4981732/93‑1 (MQ=255)
                                                               gAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGtt                         <  1:976324/93‑1 (MQ=255)
                                                               gAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGtt                         >  2:6715002/1‑93 (MQ=255)
                                                               gAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGtt                         >  1:1978154/1‑93 (MQ=255)
                                                                 aCGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTca                       >  2:4762545/1‑93 (MQ=255)
                                                                 aCGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTca                       >  2:4884059/1‑93 (MQ=255)
                                                                  cGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTcac                      <  2:6236511/93‑1 (MQ=255)
                                                                  cGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTcac                      >  2:264254/1‑93 (MQ=255)
                                                                  cGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTcac                      <  2:2078075/93‑1 (MQ=255)
                                                                    ccTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCacac                    >  1:3634495/1‑93 (MQ=255)
                                                                     cTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACAcc                   >  1:4925897/1‑93 (MQ=255)
                                                                      tGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCt                  <  2:5331600/93‑1 (MQ=255)
                                                                      tGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCt                  >  1:2972738/1‑93 (MQ=255)
                                                                        tCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGc                >  2:3413075/1‑93 (MQ=255)
                                                                        tCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGc                >  2:3290347/1‑93 (MQ=255)
                                                                        tCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGc                <  2:2566016/93‑1 (MQ=255)
                                                                        tCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGc                >  1:109776/1‑93 (MQ=255)
                                                                         cATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCa               >  2:5468529/1‑93 (MQ=255)
                                                                         cATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCa               >  2:2095200/1‑93 (MQ=255)
                                                                          aTCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACAGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAg              >  2:4697566/1‑93 (MQ=255)
                                                                           tCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAgt             <  2:5881751/93‑1 (MQ=255)
                                                                           tCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAgt             >  2:896484/1‑93 (MQ=255)
                                                                           tCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAgt             >  1:5202664/1‑93 (MQ=255)
                                                                            cGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAgtg            <  2:2072449/93‑1 (MQ=255)
                                                                            cGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAgtg            <  1:2166113/93‑1 (MQ=255)
                                                                            cGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAgtg            <  1:1056864/93‑1 (MQ=255)
                                                                              tGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGtgtg          >  2:3451447/1‑93 (MQ=255)
                                                                              tGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGtgtg          <  2:1524779/93‑1 (MQ=255)
                                                                              tGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGtgtg          <  1:2645998/93‑1 (MQ=255)
                                                                               ggATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGTGTgg         <  2:5292726/93‑1 (MQ=255)
                                                                                gATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGTGTggg        <  2:3261844/93‑1 (MQ=255)
                                                                                  tttGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGTGTgggga      >  1:1947107/1‑92 (MQ=255)
                                                                                  tttGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTACCTGTTCACACCTGCAGTGTGGGGc      >  1:2824406/1‑93 (MQ=255)
                                                                                     ttgAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGTGTGGGGCAAc   <  2:1585191/92‑1 (MQ=255)
                                                                                     gtgAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGTGTGGGGCAAc   >  2:426617/1‑93 (MQ=255)
                                                                                          |                                                                                        
TGCGCTGATTATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGTCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGTGTGGGGCAACG  >  NC_000913/1664001‑1664179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: