BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	200,585	A→G	Q35R (CAG→CGG)	hlpA →	histone‑like protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	200,585	0	A	G	100.0%	734.6 / NA	225	Q35R (CAG→CGG)	hlpA	histone‑like protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (107/118); total (107/118)

Only 100 of 238 total aligned reads displayed.

TATTAGCTGCAGGTCTCGGTTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCAGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTATGGAAACCGATCTGC  >  NC_000913/200495‑200674

 attaGCTGCAGGTCTCGGTTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGt                                                                                        <  1:4429915/93‑1 (MQ=255)

 attaGCTGCAGGTCTCGGTTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGt                                                                                        <  2:6134821/93‑1 (MQ=255)

 attaGCTGCAGGTCTCGGGTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGt                                                                                        >  2:5048247/1‑93 (MQ=255)

  ttaGCTGCAGGTCTCGGTTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTa                                                                                       >  2:475525/1‑93 (MQ=255)

    aGCTGCAGGTCTCGGTTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAgc                                                                                     >  2:579996/1‑93 (MQ=255)

     gCTGCAGGTCTCGGTTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAgcg                                                                                    >  1:6383242/1‑93 (MQ=255)

     gCTGCAGGTCTCGGTTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAgcg                                                                                    >  2:5461622/1‑93 (MQ=255)

       tGCAGGTCTCGGTTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGGCTGTTCCAGCGGGGAGCGCa                                                                                  >  1:586261/1‑93 (MQ=255)

       tGCAGGTCTCGGTTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAgcgcg                                                                                  >  1:2987300/1‑92 (MQ=255)

       tGCAGGTCTCGGTTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCa                                                                                  >  2:1852444/1‑93 (MQ=255)

        gCAGGTCTCGGTTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAg                                                                                 >  2:1405871/1‑93 (MQ=255)

         cAGGTCACGGTTTAGCACTGGCAACTTCTGCTCAGGAGGCTGACAAAATTGCAATCGTCAACATCGGCAGCCTGTTCCAGCGGGTAGCGCAGa                                                                                >  1:1118354/1‑93 (MQ=255)

           ggTCTCGGTTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGaaa                                                                              >  2:831907/1‑93 (MQ=255)

               tcGGTTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCg                                                                          >  1:5424957/1‑93 (MQ=255)

                cGGTTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCgg                                                                         <  1:3922623/93‑1 (MQ=255)

                cGGTTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCgg                                                                         <  2:296972/93‑1 (MQ=255)

                cGGTTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCATCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCgg                                                                         <  1:4161564/93‑1 (MQ=255)

                 ggTTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGgt                                                                        <  2:5077589/93‑1 (MQ=255)

                 ggTTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGgt                                                                        <  1:5620918/93‑1 (MQ=255)

                 ggTTTAGCACTGGCAACTTCTACTCAGGCGGCTGACAAAATTGCGATCGTCAACATGGGCAGCCTGATCCAGCGGGTAGCGCAGACGACCGgt                                                                        <  1:6724824/93‑1 (MQ=255)

                  gTTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGgtg                                                                       <  2:204674/93‑1 (MQ=255)

                   tttAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGgtgt                                                                      <  2:803521/93‑1 (MQ=255)

                   tttAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGgtgt                                                                      <  2:6534392/93‑1 (MQ=255)

                     tAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGttt                                                                    >  2:3289098/1‑93 (MQ=255)

                      aGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTc                                                                   <  1:95023/93‑1 (MQ=255)

                       gCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCt                                                                  >  1:4898289/1‑93 (MQ=255)

                         aCTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTaa                                                                <  2:5205560/93‑1 (MQ=255)

                           tGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAaca                                                              >  1:4518393/1‑93 (MQ=255)

                               aaCTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCt                                                          >  1:4759245/1‑93 (MQ=255)

                                aCTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTg                                                         >  2:374861/1‑93 (MQ=255)

                                aCTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTg                                                         >  2:4360663/1‑93 (MQ=255)

                                aCTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTg                                                         <  2:6307447/93‑1 (MQ=255)

                                 cTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTgg                                                        >  1:4805823/1‑93 (MQ=255)

                                  ttCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGa                                                       >  1:3028777/1‑93 (MQ=255)

                                  ttCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGa                                                       >  1:1982236/1‑93 (MQ=255)

                                   tCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGaa                                                      <  1:1909967/93‑1 (MQ=255)

                                      gCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAAt                                                   <  1:773251/93‑1 (MQ=255)

                                       cTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATg                                                  >  2:6325306/1‑93 (MQ=255)

                                          aGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGt                                               >  1:4653042/1‑93 (MQ=255)

                                          aGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGt                                               >  2:3243555/1‑93 (MQ=255)

                                           ggcggcTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGtt                                              <  2:6479394/93‑1 (MQ=255)

                                              ggcTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCT‑GAAAATGAGTTCaaa                                          >  2:5883438/1‑93 (MQ=255)

                                               gcTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCaaa                                          <  2:2458025/93‑1 (MQ=255)

                                               gcTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCaaa                                          <  1:5525721/93‑1 (MQ=255)

                                               gcTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCaaa                                          <  2:4967067/93‑1 (MQ=255)

                                               gcTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCaaa                                          <  1:113209/93‑1 (MQ=255)

                                                cTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAg                                         <  2:1010384/93‑1 (MQ=255)

                                                  gACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGc                                       <  1:4226447/93‑1 (MQ=255)

                                                   aCAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGcc                                      <  1:5127552/93‑1 (MQ=255)

                                                     aaaaTTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGt                                    >  2:5323769/1‑93 (MQ=255)

                                                      aaaTTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTg                                   >  2:1833663/1‑93 (MQ=255)

                                                      aaaTTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTg                                   <  1:3126968/93‑1 (MQ=255)

                                                      aaaTTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTg                                   >  1:6148251/1‑93 (MQ=255)

                                                       aaTTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGc                                  >  1:6114/1‑93 (MQ=255)

                                                        atcgCAATCGTCAGCATGCGCTCCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACCCTGGACAATGAGTTCAACGGCCGTTcc                                 <  1:5943168/90‑1 (MQ=255)

                                                        aTTGCAATCGTTCACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGcc                                 <  1:2607227/93‑1 (MQ=255)

                                                        aTTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGcc                                 <  2:4792530/93‑1 (MQ=255)

                                                        aTTGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGcc                                 >  2:5253583/1‑93 (MQ=255)

                                                         ttGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCa                                >  2:1579155/1‑93 (MQ=255)

                                                         ttGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCa                                >  1:1328111/1‑93 (MQ=255)

                                                          tGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAg                               <  2:1336612/93‑1 (MQ=255)

                                                          tGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAg                               <  2:5492508/93‑1 (MQ=255)

                                                          tGCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAg                               <  1:1049167/93‑1 (MQ=255)

                                                           gCAATCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGc                              <  1:1516876/93‑1 (MQ=255)

                                                             aaTCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGa                            >  1:4354349/1‑93 (MQ=255)

                                                               tCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAAc                          >  1:4092438/1‑93 (MQ=255)

                                                               tCGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAAc                          <  2:2027836/93‑1 (MQ=255)

                                                                cGTCAACATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACt                         <  2:4068908/93‑1 (MQ=255)

                                                                    aaCATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAg                     <  2:689154/93‑1 (MQ=255)

                                                                    aaCATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAg                     >  1:3870708/1‑93 (MQ=255)

                                                                    aaCATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAg                     <  2:2120907/93‑1 (MQ=255)

                                                                     aCATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGc                    >  1:235988/1‑93 (MQ=255)

                                                                     aCATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGc                    <  1:5169858/93‑1 (MQ=255)

                                                                     aCATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGc                    <  1:2438347/93‑1 (MQ=255)

                                                                     aCATGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGc                    >  2:2542016/1‑93 (MQ=255)

                                                                       aTGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGt                  <  2:3360546/93‑1 (MQ=255)

                                                                       aTGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGt                  <  2:1666773/93‑1 (MQ=255)

                                                                       aTGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGt                  >  1:2230199/1‑93 (MQ=255)

                                                                       aTGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGt                  >  1:6412209/1‑93 (MQ=255)

                                                                        tGGGCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTa                 <  1:1089490/93‑1 (MQ=255)

                                                                         gggCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTAt                <  1:5729906/93‑1 (MQ=255)

                                                                         gggCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTAt                <  2:4187996/93‑1 (MQ=255)

                                                                          ggCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACATGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTATg               <  1:3532157/93‑1 (MQ=255)

                                                                          ggCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTATg               <  2:574067/93‑1 (MQ=255)

                                                                          ggCAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTATg               <  1:3199291/93‑1 (MQ=255)

                                                                            cAGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTATGGa             <  1:4252292/93‑1 (MQ=255)

                                                                             aGCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTATGGaa            >  1:1478235/1‑93 (MQ=255)

                                                                              gCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTATGGaaa           >  2:468963/1‑93 (MQ=255)

                                                                              gCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTATGGaaa           >  2:6142351/1‑93 (MQ=255)

                                                                              gCCTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAAGCCGTGCCAGCGCACTACAGCGTATGGaaa           >  1:1383484/1‑93 (MQ=255)

                                                                               ccTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTATGGAAAc          <  2:5137467/93‑1 (MQ=255)

                                                                               ccTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTATGGAAAc          <  1:3601002/93‑1 (MQ=255)

                                                                                cTGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTATGGAAAcc         >  2:3580575/1‑93 (MQ=255)

                                                                                 tGTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTATGGAAACCg        >  2:1233200/1‑93 (MQ=255)

                                                                                  gTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTATGGAAACCGa       <  1:2082462/93‑1 (MQ=255)

                                                                                  gTTCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTATGGAAACCGa       >  2:5106744/1‑93 (MQ=255)

                                                                                   ttCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTATGGAAACCGAt      <  2:2745585/93‑1 (MQ=255)

                                                                                    tCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTATGGAAACCGATc     <  1:2263956/93‑1 (MQ=255)

                                                                                    tCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTATGGAAACCGATc     <  2:6174790/93‑1 (MQ=255)

                                                                                    tCCAGCGGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTATGGAAACCGATc     <  2:3107596/93‑1 (MQ=255)

TATTAGCTGCAGGTCTCGGTTTAGCACTGGCAACTTCTGCTCAGGCGGCTGACAAAATTGCAATCGTCAACATGGGCAGCCTGTTCCAGCAGGTAGCGCAGAAAACCGGTGTTTCTAACACGCTGGAAAATGAGTTCAAAGGCCGTGCCAGCGAACTGCAGCGTATGGAAACCGATCTGC  >  NC_000913/200495‑200674

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`