BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,923,118	T→C	intergenic (‑125/‑14)	b1841 ← / → holE	hypothetical protein/DNA polymerase III theta subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,923,118	0	T	C	100.0%	802.1 / NA	242	intergenic (‑125/‑14)	b1841/holE	hypothetical protein/DNA polymerase III theta subunit
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (103/139); total (103/139)

Only 100 of 253 total aligned reads displayed.

GAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGATGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTGG  >  NC_000913/1923028‑1923207

 agCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACgag                                                                                        <  1:1084268/93‑1 (MQ=255)

 agCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACgag                                                                                        <  1:5237415/93‑1 (MQ=255)

 agCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACgag                                                                                        <  1:2410605/93‑1 (MQ=255)

  gCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACgagg                                                                                       >  2:3272233/1‑93 (MQ=255)

    aTAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACgaggag                                                                                     >  2:537636/1‑93 (MQ=255)

    aTAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACgaggag                                                                                     >  1:2793656/1‑93 (MQ=255)

     tAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGgaga                                                                                    >  2:4765867/1‑93 (MQ=255)

      aaCCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTATTAACTTTTGCCCGCGAATGACGAGGAGAt                                                                                   <  1:5305573/93‑1 (MQ=255)

      aaCCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGAt                                                                                   <  1:3919713/93‑1 (MQ=255)

      aaCCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGAt                                                                                   <  2:3092562/93‑1 (MQ=255)

      aaCCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGAt                                                                                   <  2:3536695/93‑1 (MQ=255)

       aCCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGAtt                                                                                  >  2:6500360/1‑93 (MQ=255)

       aCCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGAtt                                                                                  >  2:1068233/1‑93 (MQ=255)

         cgtGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTaa                                                                                <  1:6032849/91‑1 (MQ=255)

         cTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTaa                                                                                >  1:5887818/1‑93 (MQ=255)

          ttGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAg                                                                               >  2:2100601/1‑93 (MQ=255)

           tGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGa                                                                              >  1:3329437/1‑93 (MQ=255)

           tGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGa                                                                              <  1:786755/93‑1 (MQ=255)

            gTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGaa                                                                             <  2:4025114/93‑1 (MQ=255)

            gTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGaa                                                                             <  2:1759307/93‑1 (MQ=255)

             tCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAAt                                                                            <  1:1315302/93‑1 (MQ=255)

             tCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAAt                                                                            >  1:3586880/1‑93 (MQ=255)

             tCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAAt                                                                            <  1:205115/93‑1 (MQ=255)

             tCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAAt                                                                            <  1:1593352/93‑1 (MQ=255)

               tAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGc                                                                          >  1:3077445/1‑93 (MQ=255)

               tAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGc                                                                          >  2:4183281/1‑93 (MQ=255)

               tAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGc                                                                          >  2:818674/1‑93 (MQ=255)

               tAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGc                                                                          <  2:4875836/93‑1 (MQ=255)

                aaTGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCt                                                                         >  1:4439085/1‑93 (MQ=255)

                 aTGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTg                                                                        <  1:5410330/93‑1 (MQ=255)

                 aTGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTg                                                                        >  1:910304/1‑93 (MQ=255)

                    tCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTgaag                                                                     <  1:3972137/93‑1 (MQ=255)

                     cTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTgaaga                                                                    <  2:375022/93‑1 (MQ=255)

                      tGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTgaagaa                                                                   <  2:1460778/93‑1 (MQ=255)

                      tGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTgaagaa                                                                   >  1:2962499/1‑93 (MQ=255)

                      tGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTgaagaa                                                                   >  2:1132677/1‑93 (MQ=255)

                        ggTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATc                                                                 <  2:2039957/92‑1 (MQ=255)

                        aGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATc                                                                 <  2:5171186/93‑1 (MQ=255)

                         gTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGCATGCTGAAGAATCt                                                                >  2:3632847/1‑93 (MQ=255)

                         gTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCt                                                                <  1:2740281/93‑1 (MQ=255)

                           cGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTgg                                                              >  2:5495674/1‑93 (MQ=255)

                           cGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTgg                                                              >  2:4645184/1‑93 (MQ=255)

                            gAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGc                                                             <  1:2566542/93‑1 (MQ=255)

                              ggATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTa                                                           <  2:1261129/93‑1 (MQ=255)

                              ggATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGATa                                                           >  1:4676037/1‑93 (MQ=255)

                                atcatcAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTaaa                                                         >  2:1997978/1‑93 (MQ=255)

                                 tcatcaATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAAc                                                        >  2:1581674/1‑93 (MQ=255)

                                 tcatcaATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAAc                                                        >  2:139253/1‑93 (MQ=255)

                                 tcatcaATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAAc                                                        >  1:5123173/1‑93 (MQ=255)

                                 tcatcaATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAAc                                                        <  2:6160187/93‑1 (MQ=255)

                                 tcatcaATCACGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAAc                                                        <  1:4225497/93‑1 (MQ=255)

                                  catcaATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACt                                                       <  1:1565187/93‑1 (MQ=255)

                                  catcaATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACt                                                       <  2:722922/93‑1 (MQ=255)

                                     caATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGa                                                    <  2:3682145/93‑1 (MQ=255)

                                       aTTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATc                                                  >  2:233643/1‑93 (MQ=255)

                                       aTTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATc                                                  <  2:4392442/93‑1 (MQ=255)

                                       aTTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATc                                                  >  2:897761/1‑93 (MQ=255)

                                            ggCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACa                                             >  1:2672692/1‑93 (MQ=255)

                                               ttGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGaa                                          >  1:4146139/1‑93 (MQ=255)

                                                 tccATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAAt                                        <  1:5937592/92‑1 (MQ=255)

                                                   cATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATgg                                      >  1:569153/1‑93 (MQ=255)

                                                   cATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATgg                                      >  1:185088/1‑93 (MQ=255)

                                                    aTCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGa                                     <  2:5026962/93‑1 (MQ=255)

                                                     tCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGAt                                    <  1:3711296/93‑1 (MQ=255)

                                                       cTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaa                                  <  1:4088796/93‑1 (MQ=255)

                                                       cTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaa                                  >  2:1703146/1‑93 (MQ=255)

                                                       cTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaa                                  >  1:2141755/1‑93 (MQ=255)

                                                        tGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa                                 >  2:6330701/1‑93 (MQ=255)

                                                          gCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGt                               <  1:1255575/93‑1 (MQ=255)

                                                             cACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGaa                            <  2:4947507/93‑1 (MQ=255)

                                                             cACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGaa                            <  1:1039238/93‑1 (MQ=255)

                                                              aCTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATTTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAAt                           <  2:3864614/93‑1 (MQ=255)

                                                              aCTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAAt                           <  2:6087562/93‑1 (MQ=255)

                                                              aCTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAAt                           <  1:5687310/93‑1 (MQ=255)

                                                                tctTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGt                         <  2:1325784/93‑1 (MQ=255)

                                                                tctTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGt                         >  2:2169711/1‑93 (MQ=255)

                                                                tctTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGt                         <  2:2577352/93‑1 (MQ=255)

                                                                 ctTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTc                        >  1:2858761/1‑93 (MQ=255)

                                                                  ttAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCg                       >  2:5782981/1‑93 (MQ=255)

                                                                  ttAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCg                       >  1:5805501/1‑93 (MQ=255)

                                                                   tAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGa                      >  1:5024832/1‑93 (MQ=255)

                                                                    aGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGAt                     <  1:629008/93‑1 (MQ=255)

                                                                     gTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGAtt                    <  2:2635629/93‑1 (MQ=255)

                                                                     gTAACTGTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGAATCAAACAGAAATGGATAAAGTGAATGTCGAtt                    <  2:3488430/93‑1 (MQ=255)

                                                                      tAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGAttt                   >  2:5707249/1‑93 (MQ=255)

                                                                       aaCTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTg                  >  1:6373630/1‑93 (MQ=255)

                                                                        aCTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTgg                 >  2:1506892/1‑93 (MQ=255)

                                                                        aCTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTgg                 >  1:5780649/1‑93 (MQ=255)

                                                                        aCTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTgg                 >  1:6249750/1‑93 (MQ=255)

                                                                          ttttGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTggcg               >  1:608724/1‑93 (MQ=255)

                                                                                ccGCGAACGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGcc         >  1:728827/1‑93 (MQ=255)

                                                                                  gcgAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCgg       >  2:5537654/1‑93 (MQ=255)

                                                                                  gcgAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCgg       <  1:3258728/93‑1 (MQ=255)

                                                                                  gcgAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCgg       <  2:2796664/93‑1 (MQ=255)

                                                                                   cgAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCggg      <  2:1701660/93‑1 (MQ=255)

                                                                                   cgAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCggg      <  1:4801576/93‑1 (MQ=255)

                                                                                    gAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCgggg     <  2:1821891/93‑1 (MQ=255)

                                                                                     aaTGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGt    >  1:3016181/1‑93 (MQ=255)

                                                                                     aaTGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGt    <  1:6635392/93‑1 (MQ=255)

                                                                                       tgacgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTgg  <  1:196847/93‑1 (MQ=255)

GAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGATGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTGG  >  NC_000913/1923028‑1923207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`