Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 230,556 A→G M109T (ATG→ACG)  yafC ← putative transcriptional regulator LYSR‑type

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913230,5560AG99.6% 844.2 / NA 259M109T (ATG→ACG) yafCputative transcriptional regulator LYSR‑type
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base G (146/112);  minor base C (0/1);  total (146/113)
Fisher's exact test for biased strand distribution p-value = 4.36e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 265 total aligned reads displayed.

TTTCTTTCGATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCATCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCTGATTCTGCC  >  NC_000913/230466‑230645
                                                                                          |                                                                                         
 ttctttcGATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCa                                                                                        <  2:894010/93‑1 (MQ=255)
 ttctttcGATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCa                                                                                        >  1:45824/1‑93 (MQ=255)
  tctttcGATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGCCTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAg                                                                                       >  2:6611508/1‑93 (MQ=255)
  tctttcGATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAg                                                                                       >  2:4709939/1‑93 (MQ=255)
  tctttcGATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAg                                                                                       >  1:3623335/1‑93 (MQ=255)
    tttcGATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGaa                                                                                     >  1:1252652/1‑93 (MQ=255)
       cGATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGt                                                                                  <  1:4181359/93‑1 (MQ=255)
       cGATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGt                                                                                  <  2:3385933/93‑1 (MQ=255)
        gATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAgag                                                                                 >  1:2169209/1‑91 (MQ=255)
        gATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTg                                                                                 >  2:5155497/1‑93 (MQ=255)
         aTCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTgc                                                                                <  1:4984560/93‑1 (MQ=255)
         aTCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTgc                                                                                >  1:3381302/1‑93 (MQ=255)
         aTCAAATGAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGAGTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTgc                                                                                <  1:5064012/93‑1 (MQ=255)
          tCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTgca                                                                               >  1:2692466/1‑93 (MQ=255)
          tCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTgca                                                                               >  1:5332208/1‑93 (MQ=255)
           cAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTgcag                                                                              >  2:1588126/1‑93 (MQ=255)
            aaaTTAATAATCGTTTCGGAGGAGACTAGCGACCAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGTAAGTgcagc                                                                             >  1:3200458/1‑93 (MQ=255)
            aaaTTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTgcagc                                                                             >  1:2862448/1‑93 (MQ=255)
            aaaTTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTgcagc                                                                             <  1:827916/93‑1 (MQ=255)
              aTTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGcac                                                                           >  1:1521872/1‑93 (MQ=255)
              aTTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGcac                                                                           >  2:4446700/1‑93 (MQ=255)
               ttAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGcacc                                                                          >  2:509358/1‑93 (MQ=255)
               ttAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGcacc                                                                          <  2:1508039/93‑1 (MQ=255)
               ttAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGcacc                                                                          >  1:5366652/1‑93 (MQ=255)
                taataaTCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGcacca                                                                         <  2:3026001/93‑1 (MQ=255)
                taataaTCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGcacca                                                                         >  1:5879848/1‑93 (MQ=255)
                 aataatCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGcaccac                                                                        >  1:3478914/1‑93 (MQ=255)
                 aataatCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGcaccac                                                                        >  2:3078923/1‑93 (MQ=255)
                 aataatCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGcaccac                                                                        <  1:2735182/93‑1 (MQ=255)
                  ataatCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACt                                                                       <  2:4030882/93‑1 (MQ=255)
                  ataatCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACt                                                                       <  1:4713985/93‑1 (MQ=255)
                   taatCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTg                                                                      <  2:237037/93‑1 (MQ=255)
                    aatCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTgg                                                                     <  1:1128857/93‑1 (MQ=255)
                     atCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGa                                                                    <  1:302851/93‑1 (MQ=255)
                      tCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAg                                                                   >  2:4893792/1‑93 (MQ=255)
                       cGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGt                                                                  <  1:1968882/93‑1 (MQ=255)
                       cGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGt                                                                  >  2:739465/1‑93 (MQ=255)
                       cGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGt                                                                  <  1:5806428/93‑1 (MQ=255)
                        gTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGtt                                                                 <  2:3210333/93‑1 (MQ=255)
                        gTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGtt                                                                 >  1:6082006/1‑93 (MQ=255)
                        gTTGCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAGGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGtt                                                                 <  2:4693029/93‑1 (MQ=255)
                            cGGAGGAGGCTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCgg                                                             >  1:6567940/1‑93 (MQ=255)
                             ggaggaGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGc                                                            >  1:4136548/1‑93 (MQ=255)
                              gaggagACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCa                                                           >  1:914604/1‑93 (MQ=255)
                              gaggagACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCa                                                           >  2:5994016/1‑93 (MQ=255)
                               aggagACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCAt                                                          >  2:2441210/1‑93 (MQ=255)
                                   gaCTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGTCATCGAt                                                      <  1:6360514/93‑1 (MQ=255)
                                   gaCTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGAt                                                      >  1:4806973/1‑93 (MQ=255)
                                     cTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATcc                                                    <  1:2502447/93‑1 (MQ=255)
                                     cTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATcc                                                    >  2:4239426/1‑93 (MQ=255)
                                      tAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCg                                                   >  1:5246228/1‑93 (MQ=255)
                                        gCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTa                                                 <  2:4587160/93‑1 (MQ=255)
                                          gACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAAc                                               >  1:6163523/1‑93 (MQ=255)
                                           aCAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACa                                              <  1:5573150/93‑1 (MQ=255)
                                            cAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAg                                             <  2:5862631/93‑1 (MQ=255)
                                             aaaGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGt                                            >  1:1600487/1‑93 (MQ=255)
                                             aaaGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGACAGAAAGTGCAGCACGACTGGAGTTGCGGCATCGATCCGTAACAGt                                            >  2:3972990/1‑93 (MQ=255)
                                              aaGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTc                                           >  2:3640586/1‑93 (MQ=255)
                                              aaGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTc                                           >  1:3354201/1‑93 (MQ=255)
                                              aaGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTc                                           >  2:1548784/1‑93 (MQ=255)
                                              aaGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTc                                           >  2:373383/1‑93 (MQ=255)
                                                 tGACTTCCTGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCAc                                        >  1:6550844/1‑93 (MQ=255)
                                                 tGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCAc                                        <  1:5493018/93‑1 (MQ=255)
                                                  gACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCAcg                                       <  1:5946456/93‑1 (MQ=255)
                                                    cTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCAcgcg                                     <  2:5708726/93‑1 (MQ=255)
                                                      tCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGgt                                   <  1:1430847/93‑1 (MQ=255)
                                                      tCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGgt                                   <  1:3056799/93‑1 (MQ=255)
                                                       ccGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGgtg                                  <  2:832746/93‑1 (MQ=255)
                                                        cGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGgtgt                                 <  2:2044120/93‑1 (MQ=255)
                                                         ggATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTa                                >  2:4653523/1‑93 (MQ=255)
                                                         ggATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTa                                >  2:2700498/1‑93 (MQ=255)
                                                         ggATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTa                                <  2:466320/93‑1 (MQ=255)
                                                         ggATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTa                                >  2:3230972/1‑93 (MQ=255)
                                                          gATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTAt                               >  2:2199786/1‑93 (MQ=255)
                                                          gATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTAt                               >  1:3997147/1‑93 (MQ=255)
                                                           aTAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTAtt                              >  2:6343231/1‑93 (MQ=255)
                                                           aTAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTAtt                              <  2:131681/93‑1 (MQ=255)
                                                            tAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTa                             >  2:2498861/1‑93 (MQ=255)
                                                             aGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTAc                            <  1:296571/93‑1 (MQ=255)
                                                             aGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTAc                            >  2:1147783/1‑93 (MQ=255)
                                                              gCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTAcg                           <  1:1647971/93‑1 (MQ=255)
                                                                  tCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGtc                       >  2:6660395/1‑93 (MQ=255)
                                                                   cACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGtct                      <  2:3117786/93‑1 (MQ=255)
                                                                   cACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGtct                      >  2:1765894/1‑93 (MQ=255)
                                                                      ggAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCa                   <  1:2291520/93‑1 (MQ=255)
                                                                        aaaGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATa                 <  1:2428810/93‑1 (MQ=255)
                                                                         aaGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATaa                <  1:5177971/93‑1 (MQ=255)
                                                                         aaGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATaa                >  2:6557764/1‑93 (MQ=255)
                                                                          aGGCTTAATTAACGGCGTCAGAAAGTGCTGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAAt               <  2:6448731/93‑1 (MQ=255)
                                                                          aGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAAt               <  1:3968253/93‑1 (MQ=255)
                                                                             cTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTc            >  1:3854560/1‑93 (MQ=255)
                                                                              ttaattaaCGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCt           >  2:5418962/1‑93 (MQ=255)
                                                                              ttaattaaCGGCGTCAGAAAGTGCAGCACCACTGGAGCTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCt           >  1:6652103/1‑93 (MQ=255)
                                                                                aattaaCGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGGGTATTACGCGTCTCCATAATTTCTGa         >  1:1766226/1‑93 (MQ=255)
                                                                                 attaaCGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCTGAt        >  1:1074153/1‑93 (MQ=255)
                                                                                 attaaCGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCTGAt        <  1:5884980/93‑1 (MQ=255)
                                                                                 attaaCGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCTGAt        >  2:1248224/1‑93 (MQ=255)
                                                                                   taaCGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCTGATTc      <  1:3759135/93‑1 (MQ=255)
                                                                                   taaCGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCTGATTc      <  2:4526800/93‑1 (MQ=255)
                                                                                     aCGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCTGATTCTg    >  2:6196745/1‑93 (MQ=255)
                                                                                          |                                                                                         
TTTCTTTCGATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCATCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCTGATTCTGCC  >  NC_000913/230466‑230645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: