BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,666,143	A→G	I258I (ATT→ATC)	hcaR ←	HcaR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,666,143	0	A	G	100.0%	693.9 / NA	213	I258I (ATT→ATC)	hcaR	HcaR
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (95/118); total (95/118)

Only 100 of 217 total aligned reads displayed.

CTGCACAATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGATTCAT  >  NC_000913/2666053‑2666232

cTGCACAATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGAt                                                                                         >  2:41135/1‑93 (MQ=255)

 tGCACAATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATg                                                                                        >  1:2167170/1‑93 (MQ=255)

  gCACAATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATgg                                                                                       <  1:905882/93‑1 (MQ=255)

  gCACAATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATgg                                                                                       <  2:2276832/93‑1 (MQ=255)

  gCACAATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATgg                                                                                       <  2:2775623/93‑1 (MQ=255)

  gCACAATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATgg                                                                                       <  2:3080593/93‑1 (MQ=255)

   cacaATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATggg                                                                                      <  2:5070231/93‑1 (MQ=255)

   cacaATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATggg                                                                                      <  1:3103492/93‑1 (MQ=255)

    acaATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGa                                                                                     >  1:1012811/1‑93 (MQ=255)

     caATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGAc                                                                                    >  1:970314/1‑93 (MQ=255)

     caATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGAc                                                                                    >  2:282405/1‑93 (MQ=255)

          gCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGaaaa                                                                               <  2:5560474/93‑1 (MQ=255)

            gATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAaac                                                                             >  1:6654112/1‑93 (MQ=255)

            gATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAaac                                                                             >  2:1293069/1‑93 (MQ=255)

              tGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAaacaa                                                                           <  1:6330861/93‑1 (MQ=255)

              tGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAaacaa                                                                           >  2:3127795/1‑93 (MQ=255)

               gAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAaacaac                                                                          <  2:4516002/93‑1 (MQ=255)

                aaaTCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAAcc                                                                         <  1:330259/93‑1 (MQ=255)

                aaaTCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAAcc                                                                         <  2:5630778/93‑1 (MQ=255)

                aaaTCGCGTAATGCCGGCTTCATCTCCCCTTTCTGCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAAcc                                                                         <  2:4859427/93‑1 (MQ=255)

                 aaTCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACTCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCt                                                                        >  2:778195/1‑93 (MQ=255)

                   tCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGt                                                                      <  2:5380035/93‑1 (MQ=255)

                    cgcgTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTc                                                                     <  1:3626654/93‑1 (MQ=255)

                    cgcgTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTc                                                                     <  2:2373833/93‑1 (MQ=255)

                       gTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCgg                                                                  >  2:1650127/1‑93 (MQ=255)

                       gTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCgg                                                                  >  1:555752/1‑93 (MQ=255)

                       gTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCgg                                                                  <  1:6647820/93‑1 (MQ=255)

                         aaTGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTa                                                                >  2:3709156/1‑93 (MQ=255)

                         aaTGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTa                                                                <  2:319022/93‑1 (MQ=255)

                          aTGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTAt                                                               >  1:6374607/1‑93 (MQ=255)

                              cGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTaaa                                                           <  1:5624589/93‑1 (MQ=255)

                               ggCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTaaaa                                                          <  2:4423315/93‑1 (MQ=255)

                               ggCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTaaaa                                                          <  1:5957159/93‑1 (MQ=255)

                                tcTTCATCTCCCCTTTCTGCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAGCCTGTCCGGTATTAAAat                                                         <  2:5062792/92‑1 (MQ=255)

                                  ttCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAatta                                                       <  1:4855889/93‑1 (MQ=255)

                                  ttCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAatta                                                       <  1:2832216/93‑1 (MQ=255)

                                  ttCATCCCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAatta                                                       <  1:5193170/93‑1 (MQ=255)

                                   tCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAattat                                                      >  2:3351342/1‑93 (MQ=255)

                                    cATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAattatt                                                     <  2:3207693/93‑1 (MQ=255)

                                    cATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAattatt                                                     <  1:99888/93‑1 (MQ=255)

                                     aTCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTc                                                    >  2:5261305/1‑93 (MQ=255)

                                     aTCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTc                                                    >  1:1194771/1‑93 (MQ=255)

                                      tctcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTCAAATTATTCa                                                   >  1:3182109/1‑93 (MQ=255)

                                      tctcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCa                                                   >  2:2680933/1‑93 (MQ=255)

                                      tctcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCa                                                   <  2:1971210/93‑1 (MQ=255)

                                      tctcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCa                                                   <  1:3359710/93‑1 (MQ=255)

                                      tctcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCa                                                   <  1:4140031/93‑1 (MQ=255)

                                      tctcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCa                                                   >  2:3943375/1‑93 (MQ=255)

                                       ctcCCCTTTCTTCCACGCCATCATGAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCat                                                  <  2:823415/93‑1 (MQ=255)

                                       ctcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCat                                                  <  2:6591777/93‑1 (MQ=255)

                                       ctcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCat                                                  >  2:5820508/1‑93 (MQ=255)

                                          cccTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCAtata                                               >  1:1568551/1‑93 (MQ=255)

                                          cccTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCAtata                                               <  2:639089/93‑1 (MQ=255)

                                           ccTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATaa                                              <  1:5023451/93‑1 (MQ=255)

                                            cTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGACGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAAc                                             >  2:5406910/1‑93 (MQ=255)

                                                cttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCggg                                         <  1:1713415/93‑1 (MQ=255)

                                                 ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGt                                        >  2:3721023/1‑93 (MQ=255)

                                                   ccACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCACATAACCGGGTAt                                      >  1:6399354/1‑93 (MQ=255)

                                                    cACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATc                                     <  1:5449343/93‑1 (MQ=255)

                                                    cACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATc                                     <  2:3524452/93‑1 (MQ=255)

                                                    cACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGAAta                                     >  1:5819751/1‑92 (MQ=255)

                                                      cGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCaa                                   <  2:690862/93‑1 (MQ=255)

                                                       gCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCaaa                                  <  1:1135232/93‑1 (MQ=255)

                                                       gCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCaaa                                  <  2:4227869/93‑1 (MQ=255)

                                                        ccATCAGTAAAGCAATGCAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAg                                 <  2:1352960/93‑1 (MQ=255)

                                                         cATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGt                                >  1:4939732/1‑93 (MQ=255)

                                                         cATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGt                                <  1:4176258/93‑1 (MQ=255)

                                                          aTCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTg                               >  1:5857656/1‑93 (MQ=255)

                                                           tCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGa                              <  2:4049722/93‑1 (MQ=255)

                                                           tCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGa                              <  2:6242654/93‑1 (MQ=255)

                                                            cAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGAc                             <  1:4466556/93‑1 (MQ=255)

                                                            cAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGAc                             <  1:3866076/93‑1 (MQ=255)

                                                             aGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAAACTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACg                            >  1:3681792/1‑93 (MQ=255)

                                                              gTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGc                           >  2:1852078/1‑93 (MQ=255)

                                                                aaaGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGccc                         <  1:3730548/93‑1 (MQ=255)

                                                                aaaGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGccc                         <  2:2179057/93‑1 (MQ=255)

                                                                aaaGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGccc                         >  1:5517509/1‑93 (MQ=255)

                                                                aaaGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGccc                         >  1:211210/1‑93 (MQ=255)

                                                                 aaGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCa                        >  1:1157687/1‑93 (MQ=255)

                                                                 aaGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCa                        >  2:5120167/1‑93 (MQ=255)

                                                                  aGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCACAg                       >  2:4096543/1‑93 (MQ=255)

                                                                    cAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGcc                     <  1:5831847/93‑1 (MQ=255)

                                                                     aaTGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGccc                    >  2:4722778/1‑93 (MQ=255)

                                                                     aaTGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGccc                    >  1:1834107/1‑93 (MQ=255)

                                                                       tGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCa                  <  2:6521083/93‑1 (MQ=255)

                                                                       aggAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCa                  <  1:5734580/92‑1 (MQ=255)

                                                                         gAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATg                <  2:1893589/93‑1 (MQ=255)

                                                                           aGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGcc              >  2:4941730/1‑93 (MQ=255)

                                                                           aGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGcc              >  1:2771362/1‑93 (MQ=255)

                                                                            ggCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGccc             >  1:4535562/1‑93 (MQ=255)

                                                                            ggCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGccc             <  2:4260180/93‑1 (MQ=255)

                                                                             gCACATTTTCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTTTCAAAGTGACGCCCAGCCCCATGCcca            <  2:4665158/93‑1 (MQ=255)

                                                                             gCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCcca            >  1:2241346/1‑93 (MQ=255)

                                                                             gCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCACAGCCCCATGCcca            >  1:2142159/1‑93 (MQ=255)

                                                                               acaTTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCccacc          <  1:4808764/93‑1 (MQ=255)

                                                                                  tttCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGa       >  2:5736269/1‑93 (MQ=255)

                                                                                  tttCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGa       <  2:297792/93‑1 (MQ=255)

                                                                                  tttCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGa       >  1:1967836/1‑93 (MQ=255)

                                                                                     ccGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGATTc    >  1:5696130/1‑93 (MQ=255)

                                                                                       ggCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGATTCAt  <  1:4791848/93‑1 (MQ=255)

CTGCACAATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGATTCAT  >  NC_000913/2666053‑2666232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`