Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,732,197 T→C intergenic (‑4/+126) clpB ← / ← yfiH ClpB/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,732,1970TC99.6% 774.9 / ‑4.9 237intergenic (‑4/+126)clpB/yfiHClpB/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (100/136);  total (100/137)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.24e-01

Only 100 of 244 total aligned reads displayed.

GATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAG  >  NC_000913/2732107‑2732286
                                                                                          |                                                                                         
gATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAAcccc                                                                                         <  2:3193432/93‑1 (MQ=255)
      ttGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCAt                                                                                   >  1:6318962/1‑93 (MQ=255)
        ggTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATaa                                                                                 >  1:2820396/1‑93 (MQ=255)
         gTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAAc                                                                                <  2:2590713/93‑1 (MQ=255)
          ttGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACg                                                                               >  1:1759272/1‑93 (MQ=255)
          ttGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCACAACCCCTCCCATAACg                                                                               >  1:732068/1‑93 (MQ=255)
           tGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACgg                                                                              >  1:6041036/1‑93 (MQ=255)
            gTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGa                                                                             <  1:5710697/93‑1 (MQ=255)
             tCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGAt                                                                            <  1:1719681/93‑1 (MQ=255)
             tCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGAt                                                                            <  1:4061514/93‑1 (MQ=255)
                 gCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCaaa                                                                        <  2:3253008/93‑1 (MQ=255)
                 gCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCaaa                                                                        <  1:2204777/93‑1 (MQ=255)
                  cccGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAg                                                                       >  1:6710334/1‑93 (MQ=255)
                   ccGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGt                                                                      <  2:6574537/93‑1 (MQ=255)
                   ccGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGt                                                                      <  1:3434534/93‑1 (MQ=255)
                    cGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGtt                                                                     <  2:2063885/93‑1 (MQ=255)
                    cGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGtt                                                                     <  2:4733033/93‑1 (MQ=255)
                    cGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGtt                                                                     >  1:1562505/1‑93 (MQ=255)
                     gAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGCTg                                                                    >  2:2602171/1‑93 (MQ=255)
                      aGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGc                                                                   >  1:3933608/1‑93 (MQ=255)
                           aaGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTg                                                              >  2:19432/1‑93 (MQ=255)
                            aGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTgg                                                             <  1:92839/93‑1 (MQ=255)
                            aGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTgg                                                             >  2:5490583/1‑93 (MQ=255)
                             gTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGga                                                            <  1:201011/93‑1 (MQ=255)
                             gTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGga                                                            >  2:4383084/1‑93 (MQ=255)
                               gATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGgaga                                                          <  2:2521971/93‑1 (MQ=255)
                                aTTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGAt                                                         <  1:4989124/93‑1 (MQ=255)
                                 ttGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGAtt                                                        <  1:2047116/93‑1 (MQ=255)
                                 ttGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGAtt                                                        <  2:1191251/93‑1 (MQ=255)
                                   gggCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTaa                                                      <  1:5192610/93‑1 (MQ=255)
                                     gCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAAt                                                    <  2:3649176/93‑1 (MQ=255)
                                     gCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAAt                                                    <  2:1881486/93‑1 (MQ=255)
                                       agcGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGa                                                  <  2:2722605/91‑1 (MQ=255)
                                       aTCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGa                                                  <  2:5323252/93‑1 (MQ=255)
                                       aTCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGa                                                  <  2:5238262/93‑1 (MQ=255)
                                       aTCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGa                                                  >  2:389006/1‑93 (MQ=255)
                                       aTCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGa                                                  <  1:2595237/93‑1 (MQ=255)
                                       aTCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGa                                                  <  2:5039552/93‑1 (MQ=255)
                                        tCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAg                                                 <  1:819183/93‑1 (MQ=255)
                                        tCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAg                                                 <  2:5185281/93‑1 (MQ=255)
                                        tCGCCAAGAGCAAGATGGAATTTATTAGTAAGACGATCCAGACGCATATCCCCTCCCATAACGGATCAAAGTTGCTCCTGGAGGTTAAATGAg                                                 <  1:1378410/93‑1 (MQ=255)
                                          ggCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGt                                               <  2:4642310/93‑1 (MQ=255)
                                           gCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTc                                              >  1:2671364/1‑93 (MQ=255)
                                           gCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTc                                              <  2:2543375/93‑1 (MQ=255)
                                           gCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTc                                              <  2:5905803/93‑1 (MQ=255)
                                           gCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTc                                              <  2:2786505/93‑1 (MQ=255)
                                           gCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTc                                              >  1:2422717/1‑93 (MQ=255)
                                            cAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCa                                             <  1:3728639/93‑1 (MQ=255)
                                            cAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCa                                             >  2:1054929/1‑93 (MQ=255)
                                            cAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCa                                             <  2:1407380/93‑1 (MQ=255)
                                             aaGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCAt                                            >  1:1010661/1‑93 (MQ=255)
                                             aaGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCAt                                            >  1:4780399/1‑93 (MQ=255)
                                             aaGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCAt                                            >  2:6318775/1‑93 (MQ=255)
                                              agagCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATc                                           >  2:3428510/1‑93 (MQ=255)
                                               gagCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATcc                                          >  2:2832444/1‑93 (MQ=255)
                                                agCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATccc                                         <  1:3699456/93‑1 (MQ=255)
                                                agCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATccc                                         <  2:2302722/93‑1 (MQ=255)
                                                   aaGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCa                                      >  1:5925903/1‑93 (MQ=255)
                                                    aGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCaa                                     >  1:5399882/1‑93 (MQ=255)
                                                     tcTGGAATTTATTAGTAAGACGAACCAGACGCATACCCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAat                                    <  1:6179223/92‑1 (MQ=255)
                                                      cTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAatt                                   <  2:4159529/93‑1 (MQ=255)
                                                        ggAATTTATTAGTAAGACGATACAGACGCATAACCCCACCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAattat                                 >  1:1479919/1‑93 (MQ=255)
                                                         gAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAattatt                                <  1:2978252/93‑1 (MQ=255)
                                                          aaTTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTc                               >  2:3902542/1‑93 (MQ=255)
                                                          aaTTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTc                               >  1:1693869/1‑93 (MQ=255)
                                                           aTTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCa                              >  2:748261/1‑93 (MQ=255)
                                                           aTTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCa                              <  1:4326091/93‑1 (MQ=255)
                                                            tttATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCaa                             <  2:67138/93‑1 (MQ=255)
                                                            tttATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCaa                             >  2:1211246/1‑93 (MQ=255)
                                                            tttATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCaa                             <  2:5566823/93‑1 (MQ=255)
                                                             ttattaGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAg                            >  2:2992755/1‑93 (MQ=255)
                                                              tattaGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAgg                           <  1:4424404/93‑1 (MQ=255)
                                                               attaGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGt                          <  1:1272673/93‑1 (MQ=255)
                                                               attaGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGt                          <  2:3153297/93‑1 (MQ=255)
                                                               attaGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGt                          <  1:4845122/93‑1 (MQ=255)
                                                                ttaGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGtt                         <  2:1496803/93‑1 (MQ=255)
                                                                ttaGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGtt                         >  1:2111089/1‑93 (MQ=255)
                                                                ttaGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGtt                         <  1:4255821/93‑1 (MQ=255)
                                                                ttaGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGtt                         <  1:5062016/93‑1 (MQ=255)
                                                                 taGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTa                        <  1:4115449/93‑1 (MQ=255)
                                                                    tAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTg                     <  2:4028877/93‑1 (MQ=255)
                                                                    tAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTg                     <  2:174690/93‑1 (MQ=255)
                                                                    tAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTg                     <  1:2286699/93‑1 (MQ=255)
                                                                     aaGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGa                    <  1:490431/93‑1 (MQ=255)
                                                                     aaGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGa                    >  1:3518407/1‑93 (MQ=255)
                                                                      aGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGAc                   >  2:5305851/1‑93 (MQ=255)
                                                                       gACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGAcc                  >  1:957053/1‑93 (MQ=255)
                                                                        aCGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCa                 <  1:1512574/93‑1 (MQ=255)
                                                                          gATCCAGACGCATACCCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGa               <  1:5258902/93‑1 (MQ=255)
                                                                           aTCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGAt              >  2:2853826/1‑93 (MQ=255)
                                                                           aTCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGAt              <  1:6733792/93‑1 (MQ=255)
                                                                            tCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGAtt             >  1:1137509/1‑93 (MQ=255)
                                                                              cAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTaa           <  2:645298/93‑1 (MQ=255)
                                                                               aGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAAt          <  2:6235966/93‑1 (MQ=255)
                                                                               aGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAAt          >  1:3302997/1‑93 (MQ=255)
                                                                                  cGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAAtgtg       <  2:6087030/93‑1 (MQ=255)
                                                                                   gCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTga      <  2:5381465/93‑1 (MQ=255)
                                                                                     aTAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTgaaa    >  1:4581267/1‑93 (MQ=255)
                                                                                     aTAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATCAGGTCATCCCTCAATTATTCAAGGTGATTGACCAGATTAATGTgaaa    <  1:5584062/93‑1 (MQ=255)
                                                                                      tAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTgaaaa   <  2:4234094/93‑1 (MQ=255)
                                                                                          |                                                                                         
GATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAG  >  NC_000913/2732107‑2732286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: