Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 2,806,271 | T→C | intergenic (+126/‑1367) | proX → / → b2682 | high‑affinity transport system for glycine betaine and proline/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,806,271 | 0 | T | C | 99.2% | 882.3 / NA | 268 | intergenic (+126/‑1367) | proX/b2682 | high‑affinity transport system for glycine betaine and proline/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (111/155); minor base A (2/0); total (113/155) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.77e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 276 total aligned reads displayed.
CCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCTT > NC_000913/2806181‑2806360 | cgccgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCAcccc > 1:3996068/1‑93 (MQ=255) cgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCata < 1:2158806/93‑1 (MQ=255) cgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCata > 1:2266751/1‑93 (MQ=255) cgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCata > 2:1942858/1‑93 (MQ=255) cgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCata > 2:4336791/1‑93 (MQ=255) gTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCatat > 1:567836/1‑93 (MQ=255) gTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCatat < 1:857120/93‑1 (MQ=255) ttCTGTGCACAATGCGTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATAtt > 1:6119610/1‑93 (MQ=255) cTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATtca < 1:287922/93‑1 (MQ=255) cTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATtca > 2:2524843/1‑93 (MQ=255) gtgCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATtcatc < 2:5926740/93‑1 (MQ=255) tgCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATtcatca < 1:1857650/93‑1 (MQ=255) gCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCaa < 2:3720489/93‑1 (MQ=255) gCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCaa > 2:1455808/1‑93 (MQ=255) gCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCaa < 2:1711697/93‑1 (MQ=255) acaATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACa < 1:4130589/93‑1 (MQ=255) aaTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATc < 1:5624309/93‑1 (MQ=255) aTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTTAACCCATATTTATCCACATcc > 1:1178050/1‑93 (MQ=25) gCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGc > 2:1299308/1‑93 (MQ=255) gCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGc < 2:1878424/93‑1 (MQ=255) gCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGc < 2:627208/93‑1 (MQ=255) ttgggCGACGTTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCtat < 1:5860564/89‑1 (MQ=38) tGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCtat < 1:1029613/93‑1 (MQ=255) tGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCtat < 2:6095444/93‑1 (MQ=255) tGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCtat < 2:3325246/93‑1 (MQ=255) gATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCAACCCATATTCATCAACATCCGAtatt > 1:2501642/1‑93 (MQ=255) aTGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCtatta < 2:2225533/93‑1 (MQ=255) tGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCtattat < 1:1912866/93‑1 (MQ=255) gCGTCGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTattatt < 1:1326790/93‑1 (MQ=255) gCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTattatt < 1:3387028/93‑1 (MQ=255) gcGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGAt < 1:1009554/92‑1 (MQ=255) aCGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGAt > 1:1396027/1‑93 (MQ=255) tGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTcc < 2:6667512/93‑1 (MQ=255) tGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTcc > 2:5489477/1‑93 (MQ=255) ggCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCa < 2:6466206/93‑1 (MQ=255) ggCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCa > 1:4032265/1‑93 (MQ=255) gcgcGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAg < 2:67280/93‑1 (MQ=255) cgcgTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGc > 1:3483908/1‑93 (MQ=255) gcgTCTTATCACGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCt < 1:766552/93‑1 (MQ=255) cgTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCtt > 2:453944/1‑93 (MQ=255) tCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTaa > 2:5281314/1‑93 (MQ=255) tCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTaa < 1:3134634/93‑1 (MQ=255) tCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTaa < 2:241808/93‑1 (MQ=255) cTTATCATGCCTACAAACCACATCGCACATTTCAACGATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAat < 1:6056267/93‑1 (MQ=255) cTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAat < 1:2779520/93‑1 (MQ=255) cTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAat < 1:4557283/93‑1 (MQ=255) tATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTTCAGCTTAatca > 1:2581410/1‑93 (MQ=255) tCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAatcatc > 2:2128269/1‑93 (MQ=255) cATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAAtcatca < 1:5144560/93‑1 (MQ=255) tGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCAcc > 2:2576240/1‑93 (MQ=255) tGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCAcc > 1:6192634/1‑93 (MQ=255) gCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCt < 1:4428239/93‑1 (MQ=255) cTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCtga < 2:1485752/93‑1 (MQ=255) cTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCtga > 2:6193543/1‑93 (MQ=255) tACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCtgat < 2:3232177/93‑1 (MQ=255) tACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCtgat < 1:2045814/93‑1 (MQ=255) aCAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCtgatg > 1:2610573/1‑93 (MQ=255) aCAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCtgatg < 2:6359074/93‑1 (MQ=255) aaaCCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGaa < 2:4233282/93‑1 (MQ=255) aCCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACa > 1:918795/1‑93 (MQ=255) aCCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACa > 2:2553303/1‑93 (MQ=255) aCCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACa > 2:384174/1‑93 (MQ=255) caTCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACaaaaa > 2:4889300/1‑93 (MQ=255) tCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAaata < 2:1605446/93‑1 (MQ=255) tCGCACATTTCAACAATCTATCTTTCACCCCATATGCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAaata < 2:730867/93‑1 (MQ=255) cGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAaataa < 1:1579982/93‑1 (MQ=255) gCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAaataat < 2:2912597/93‑1 (MQ=255) gCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAaataat < 2:5745050/93‑1 (MQ=255) gCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAaataat > 1:1374403/1‑93 (MQ=255) acaTTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGa > 1:5410766/1‑93 (MQ=255) caTTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGAc < 2:4003455/93‑1 (MQ=255) caTTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGAc < 2:5624084/93‑1 (MQ=255) caTTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGAc < 1:4320224/93‑1 (MQ=255) aTTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACt > 1:3360030/1‑93 (MQ=255) aTTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACt > 2:1180341/1‑93 (MQ=255) aTTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACt > 2:2463198/1‑93 (MQ=255) tttCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTa > 1:2415909/1‑93 (MQ=255) ttCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTaa < 1:5273413/93‑1 (MQ=255) ttCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTaa < 2:4966272/93‑1 (MQ=255) tCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTaaa < 2:2989118/93‑1 (MQ=255) caacaaTCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAAc < 2:3401673/93‑1 (MQ=255) aacaaTCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAAcc > 1:2189894/1‑93 (MQ=255) acaaTCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCt > 2:5018414/1‑93 (MQ=255) caaTCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTa < 1:249569/93‑1 (MQ=255) aaTCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTaa > 1:1708638/1‑93 (MQ=255) aaTCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTaa < 1:4690358/93‑1 (MQ=255) aaTCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTaa < 1:372947/93‑1 (MQ=255) atctatctTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAAt < 2:2012568/93‑1 (MQ=255) tctatctTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATc < 1:3569913/93‑1 (MQ=255) tatctTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCAt > 2:4452446/1‑93 (MQ=255) tatctTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCAt > 1:3916825/1‑93 (MQ=255) tatctTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCAt < 1:1973025/93‑1 (MQ=255) atctTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATg > 1:6655252/1‑93 (MQ=255) tctTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGa < 1:5490013/93‑1 (MQ=255) tctTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGa < 1:3794166/93‑1 (MQ=255) tctTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCAAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGa > 2:4687881/1‑93 (MQ=255) tttCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGc < 2:5411038/93‑1 (MQ=255) tttCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGc < 1:6349898/93‑1 (MQ=255) ttCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCt < 2:3785985/93‑1 (MQ=255) tCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCtt < 2:318813/93‑1 (MQ=255) | CCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCTT > NC_000913/2806181‑2806360 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |